Wall clock time and date at job start Mon Mar 30 2020 17:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00090 * 2 1 4 4 H 1.48500 * 109.47205 * 269.99936 * 3 2 1 5 5 H 1.48499 * 109.47358 * 30.00310 * 3 2 1 6 6 H 1.48506 * 109.47096 * 150.00069 * 3 2 1 7 7 C 1.37875 * 119.99403 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00589 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46885 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99790 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99681 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99688 * 179.97438 * 13 11 10 15 15 H 1.08994 * 112.84345 * 314.87948 * 14 13 11 16 16 C 1.53788 * 113.68002 * 183.63348 * 14 13 11 17 17 C 1.53489 * 87.06858 * 219.40620 * 16 14 13 18 18 H 1.08997 * 115.59019 * 268.28006 * 17 16 14 19 19 C 1.53678 * 114.17623 * 131.23051 * 17 16 14 20 20 C 1.53871 * 106.22545 * 294.29795 * 19 17 16 21 21 C 1.53477 * 107.07054 * 342.15141 * 20 19 17 22 22 C 1.53737 * 107.48726 * 0.77566 * 21 20 19 23 23 H 1.08999 * 114.87156 * 245.39243 * 22 21 20 24 24 H 0.97002 * 119.99947 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47025 * 60.00136 * 9 7 2 26 26 H 1.08997 * 109.47418 * 300.00183 * 9 7 2 27 27 H 1.09000 * 109.47131 * 60.00653 * 10 9 7 28 28 H 1.08994 * 109.47522 * 300.00024 * 10 9 7 29 29 H 0.96995 * 120.00114 * 0.02562 * 13 11 10 30 30 H 1.08996 * 113.61539 * 333.95525 * 16 14 13 31 31 H 1.09002 * 113.61351 * 104.77419 * 16 14 13 32 32 H 1.08996 * 110.10016 * 53.41607 * 19 17 16 33 33 H 1.08999 * 110.10296 * 174.97644 * 19 17 16 34 34 H 1.09004 * 109.93306 * 222.81409 * 20 19 17 35 35 H 1.09005 * 109.99401 * 101.52471 * 20 19 17 36 36 H 1.08991 * 109.86335 * 241.26367 * 21 20 19 37 37 H 1.08996 * 109.86401 * 120.28848 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4915 -4.9672 -0.0025 12 8 0.2787 -4.9671 -0.0024 13 7 2.1654 -6.1344 -0.0031 14 6 1.4328 -7.4031 -0.0031 15 1 0.6077 -7.4153 0.7090 16 6 2.3412 -8.6409 0.0854 17 6 1.3943 -9.3102 -0.9203 18 1 0.5769 -9.8858 -0.4860 19 6 2.1066 -9.9789 -2.1065 20 6 2.7674 -8.8430 -2.9070 21 6 2.0884 -7.5352 -2.4778 22 6 1.0396 -7.8879 -1.4105 23 1 0.0063 -7.7051 -1.7051 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5572 0.8896 27 1 2.8724 -3.6048 0.8878 28 1 2.8711 -3.6040 -0.8922 29 1 3.1353 -6.1344 -0.0028 30 1 3.3454 -8.4743 -0.3045 31 1 2.3415 -9.1129 1.0679 32 1 2.8661 -10.6720 -1.7450 33 1 1.3836 -10.5067 -2.7284 34 1 2.6184 -9.0052 -3.9746 35 1 3.8329 -8.7990 -2.6815 36 1 1.6020 -7.0715 -3.3359 37 1 2.8287 -6.8537 -2.0588 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889611450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:17 Heat of formation + Delta-G solvation = -61.703607 kcal Electronic energy + Delta-G solvation = -16799.621551 eV Core-core repulsion = 14154.462014 eV Total energy + Delta-G solvation = -2645.159538 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88202 -39.98858 -35.60194 -35.24453 -33.25853 -32.46971 -29.73849 -27.84265 -26.22748 -24.53096 -23.19125 -21.45277 -20.58695 -19.49305 -18.78687 -17.64209 -17.29149 -16.75373 -16.50123 -16.32216 -15.73087 -15.02544 -14.71968 -14.20756 -14.05054 -13.87054 -13.41618 -13.23287 -12.82733 -12.67707 -12.48141 -12.13639 -12.01785 -11.92275 -11.79196 -11.65019 -11.55870 -11.30856 -11.17149 -11.08015 -10.58238 -10.57311 -9.92308 -8.18281 -6.32737 1.41806 1.44893 1.55851 1.74800 2.31920 2.46702 3.14639 3.37306 3.60782 3.69418 3.73639 4.10795 4.21247 4.35667 4.43104 4.52941 4.55822 4.62515 4.73880 4.77961 4.81818 4.93122 5.00590 5.08575 5.13870 5.23784 5.27073 5.37594 5.47659 5.49716 5.50883 5.62628 5.67786 5.85217 6.17321 6.67501 6.85985 7.37406 7.41541 8.94575 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053646 B = 0.004408 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.819419 B = 6350.389260 C = 6477.057932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.591 6.591 13 N -0.706 5.706 14 C 0.115 3.885 15 H 0.078 0.922 16 C -0.111 4.111 17 C -0.102 4.102 18 H 0.106 0.894 19 C -0.106 4.106 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.139 4.139 23 H 0.056 0.944 24 H 0.263 0.737 25 H -0.020 1.020 26 H -0.019 1.019 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.415 0.585 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.477 -21.048 -2.676 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.160 4.160 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.358 5.358 14 C 0.010 3.990 15 H 0.096 0.904 16 C -0.149 4.149 17 C -0.120 4.120 18 H 0.124 0.876 19 C -0.143 4.143 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.158 4.158 23 H 0.074 0.926 24 H 0.071 0.929 25 H -0.002 1.002 26 H -0.001 1.001 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.253 0.747 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.497 -20.949 -2.669 23.156 hybrid contribution -0.225 1.274 -0.049 1.295 sum 9.272 -19.675 -2.719 21.919 Atomic orbital electron populations 1.70189 1.08389 1.27813 1.51504 1.26160 0.95719 1.04022 0.94580 0.85299 0.78675 0.77591 0.78543 1.19678 1.21162 1.17807 1.21725 0.94008 0.91607 1.50798 0.90556 1.18679 0.93721 0.92614 0.94521 1.21639 0.99287 0.90349 1.04697 1.21329 0.87827 0.86897 0.74059 1.90643 1.16848 1.88453 1.51137 1.45913 1.10560 1.04478 1.74876 1.22637 0.96447 0.82684 0.97208 0.90373 1.23111 0.98481 0.92753 1.00558 1.22997 0.98755 0.93772 0.96507 0.87630 1.21918 0.99685 0.97467 0.95265 1.22018 1.00172 0.93125 1.00116 1.21757 0.97300 0.98767 0.96850 1.23623 0.98653 0.98187 0.95386 0.92561 0.92864 1.00197 1.00085 0.87798 0.87946 0.74747 0.87771 0.89206 0.89715 0.91461 0.91578 0.90412 0.93834 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.57 13.29 21.45 0.28 -60.29 16 2 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 3 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.42 4.26 29.85 0.13 2.55 16 10 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 11 C 0.51 20.37 7.83 87.66 0.69 21.06 16 12 O -0.59 -30.19 15.90 -3.03 -0.05 -30.24 16 13 N -0.71 -19.39 4.02 -439.75 -1.77 -21.15 16 14 C 0.12 2.88 3.77 45.58 0.17 3.05 16 15 H 0.08 2.32 8.02 -2.39 -0.02 2.30 16 16 C -0.11 -1.71 6.99 31.02 0.22 -1.49 16 17 C -0.10 -1.67 4.87 -9.87 -0.05 -1.71 16 18 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 19 C -0.11 -1.40 6.41 31.12 0.20 -1.20 16 20 C -0.12 -1.77 6.28 31.05 0.19 -1.57 16 21 C -0.11 -2.39 5.84 31.00 0.18 -2.21 16 22 C -0.14 -3.38 5.00 -9.69 -0.05 -3.43 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.26 15.84 8.31 -92.71 -0.77 15.06 16 25 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 26 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 27 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 28 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 29 H 0.42 8.21 8.43 -92.71 -0.78 7.43 16 30 H 0.10 1.29 7.43 -2.39 -0.02 1.28 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.50 6.53 -2.39 -0.02 1.48 16 Total: -1.00 -77.49 299.61 3.30 -74.19 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.26 Total: 11.66 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 2.54 Total: -20.96 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.48 Total: -81.44 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -77.49 3.30 -74.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889611450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.488 kcal (2) G-P(sol) polarization free energy of solvation -77.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds