Wall clock time and date at job start Mon Mar 30 2020 17:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86799 * 120.00437 * 2 1 4 4 H 1.48501 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46921 * 60.00330 * 3 2 1 6 6 H 1.48498 * 109.47315 * 300.00311 * 3 2 1 7 7 C 1.40052 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99863 * 335.37561 * 7 2 1 9 9 C 1.46371 * 120.00128 * 155.36736 * 7 2 1 10 10 O 1.21683 * 120.00217 * 345.52117 * 9 7 2 11 11 N 1.34778 * 120.00170 * 165.51914 * 9 7 2 12 12 C 1.46502 * 120.00183 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.46996 * 179.97438 * 12 11 9 14 14 H 1.09006 * 109.79379 * 54.17869 * 13 12 11 15 15 C 1.54934 * 109.80400 * 293.30333 * 13 12 11 16 16 C 1.52709 * 108.56987 * 183.44242 * 15 13 12 17 17 C 1.50806 * 108.95805 * 302.18012 * 16 15 13 18 18 C 1.31663 * 118.08853 * 104.85490 * 17 16 15 19 19 C 1.50511 * 116.92380 * 0.28286 * 18 17 16 20 20 C 1.49518 * 113.04194 * 275.42439 * 19 18 17 21 21 C 1.51387 * 117.51462 * 79.71964 * 20 19 18 22 22 H 0.96997 * 120.00328 * 182.51121 * 1 2 3 23 23 H 0.97005 * 119.99926 * 359.97438 * 11 9 7 24 24 H 1.09000 * 109.46597 * 299.99615 * 12 11 9 25 25 H 1.08999 * 109.47105 * 59.99841 * 12 11 9 26 26 H 1.09000 * 109.61798 * 303.16347 * 15 13 12 27 27 H 1.08994 * 109.61846 * 63.71652 * 15 13 12 28 28 H 1.09002 * 109.55972 * 182.33733 * 16 15 13 29 29 H 1.09001 * 109.64910 * 62.07628 * 16 15 13 30 30 H 1.08001 * 120.95294 * 284.88534 * 17 16 15 31 31 H 1.08004 * 121.53562 * 180.29626 * 18 17 16 32 32 H 1.09001 * 108.76936 * 154.50988 * 19 18 17 33 33 H 1.08997 * 108.77204 * 36.34854 * 19 18 17 34 34 H 1.08992 * 107.83642 * 317.68589 * 20 19 18 35 35 H 1.09001 * 107.80207 * 201.72653 * 20 19 18 36 36 H 1.09004 * 109.26491 * 165.91989 * 21 20 19 37 37 H 1.09002 * 109.26516 * 46.45996 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3462 0.0006 5 1 1.8822 2.3963 1.2126 6 1 1.8821 2.3964 -1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 1.5405 -2.1059 0.3888 9 6 3.3707 -1.2704 -0.5289 10 8 3.8024 -0.3520 -1.2002 11 7 4.1485 -2.3407 -0.2718 12 6 5.5137 -2.3981 -0.8002 13 6 6.1742 -3.7079 -0.3654 14 1 5.5497 -4.5516 -0.6594 15 6 6.3731 -3.7108 1.1711 16 6 7.1101 -4.9894 1.5637 17 6 6.3101 -6.1792 1.0962 18 6 6.7363 -6.8356 0.0374 19 6 7.9994 -6.3361 -0.6112 20 6 7.7587 -5.2249 -1.5822 21 6 7.5616 -3.8338 -1.0183 22 1 -0.4850 -0.8392 0.0368 23 1 3.8045 -3.0728 0.2637 24 1 5.4843 -2.3493 -1.8887 25 1 6.0884 -1.5562 -0.4141 26 1 6.9634 -2.8431 1.4654 27 1 5.4023 -3.6813 1.6658 28 1 7.2221 -5.0280 2.6472 29 1 8.0938 -5.0041 1.0945 30 1 5.4130 -6.4839 1.6148 31 1 6.2041 -7.6927 -0.3480 32 1 8.4749 -7.1642 -1.1368 33 1 8.6765 -5.9822 0.1661 34 1 6.8733 -5.4772 -2.1655 35 1 8.6065 -5.1908 -2.2665 36 1 7.6479 -3.1039 -1.8233 37 1 8.3300 -3.6366 -0.2709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890050015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:28 Heat of formation + Delta-G solvation = -71.409780 kcal Electronic energy + Delta-G solvation = -17072.273819 eV Core-core repulsion = 14426.693389 eV Total energy + Delta-G solvation = -2645.580429 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45968 -39.41851 -36.09050 -35.02927 -33.85233 -33.40693 -29.51339 -27.90806 -26.78576 -24.55515 -22.68481 -21.57799 -21.20732 -19.96534 -18.85513 -17.43482 -17.06191 -16.60718 -16.06301 -15.85640 -15.45147 -15.02661 -14.81779 -14.56755 -14.38682 -14.02740 -13.86234 -13.47013 -12.88709 -12.76851 -12.46006 -12.24975 -12.15546 -12.01152 -11.66652 -11.46475 -11.34117 -11.18431 -11.02009 -10.82085 -10.07204 -9.73979 -9.56573 -9.22984 -7.06067 1.40065 1.43734 1.49051 1.96426 2.15330 2.43552 2.98232 3.30742 3.71778 3.84602 3.89029 4.09401 4.19801 4.24325 4.47619 4.50471 4.64710 4.68401 4.78185 4.80390 4.86897 4.93785 5.04859 5.12769 5.18222 5.25834 5.33841 5.37779 5.45532 5.52380 5.57343 5.62119 5.87834 5.95552 6.06565 6.10988 6.67492 7.25137 8.08069 8.12611 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042326 B = 0.005467 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.380385 B = 5120.685173 C = 5337.142820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.038 3.962 3 Si 1.119 2.881 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.635 4.635 8 H 0.061 0.939 9 C 0.547 3.453 10 O -0.648 6.648 11 N -0.745 5.745 12 C 0.135 3.865 13 C -0.086 4.086 14 H 0.074 0.926 15 C -0.106 4.106 16 C -0.101 4.101 17 C -0.164 4.164 18 C -0.167 4.167 19 C -0.093 4.093 20 C -0.110 4.110 21 C -0.108 4.108 22 H 0.277 0.723 23 H 0.395 0.605 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.681 -13.289 2.264 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.178 4.178 3 Si 0.943 3.057 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.671 4.671 8 H 0.079 0.921 9 C 0.352 3.648 10 O -0.541 6.541 11 N -0.396 5.396 12 C 0.011 3.989 13 C -0.105 4.105 14 H 0.093 0.907 15 C -0.143 4.143 16 C -0.138 4.138 17 C -0.182 4.182 18 C -0.185 4.185 19 C -0.130 4.130 20 C -0.147 4.147 21 C -0.146 4.146 22 H 0.088 0.912 23 H 0.229 0.771 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.761 -11.130 1.760 20.196 hybrid contribution -0.855 -2.215 0.171 2.380 sum 15.906 -13.345 1.931 20.852 Atomic orbital electron populations 1.70639 1.08313 1.32150 1.35814 1.27784 0.95354 1.06794 0.87847 0.82869 0.75970 0.70176 0.76674 1.19534 1.20860 1.20956 1.22066 0.99239 0.98431 1.47408 0.92051 1.18228 0.85775 0.80880 0.79896 1.90410 1.77428 1.39805 1.46410 1.45664 1.14107 1.22454 1.57408 1.21258 0.82791 0.97947 0.96925 1.21955 0.97185 0.95098 0.96266 0.90738 1.21864 1.00358 0.97801 0.94321 1.21003 0.99510 0.91981 1.01277 1.23157 0.99815 0.96868 0.98322 1.23167 0.98522 0.99973 0.96860 1.20061 0.96025 0.97840 0.99044 1.20449 1.02165 0.93451 0.98665 1.21465 0.95304 0.97284 1.00515 0.91207 0.77120 0.94579 0.94085 0.91624 0.93085 0.91048 0.88835 0.87578 0.86604 0.90668 0.90169 0.93515 0.90977 0.91974 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.46 13.65 21.84 0.30 -49.16 16 2 C 0.04 2.22 5.48 85.31 0.47 2.69 16 3 Si 1.12 57.26 27.34 68.60 1.88 59.14 16 4 H -0.27 -14.53 5.81 99.48 0.58 -13.95 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16 7 C -0.64 -37.09 9.82 24.83 0.24 -36.84 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 9 C 0.55 30.29 7.27 86.36 0.63 30.92 16 10 O -0.65 -39.00 12.84 -4.29 -0.06 -39.06 16 11 N -0.75 -32.63 5.35 -467.41 -2.50 -35.13 16 12 C 0.13 4.93 4.86 86.38 0.42 5.35 16 13 C -0.09 -2.25 1.89 -9.84 -0.02 -2.27 16 14 H 0.07 2.03 6.29 -2.38 -0.01 2.01 16 15 C -0.11 -2.52 4.76 31.16 0.15 -2.38 16 16 C -0.10 -1.89 5.41 29.78 0.16 -1.73 16 17 C -0.16 -3.17 8.55 25.06 0.21 -2.95 16 18 C -0.17 -2.98 9.28 24.97 0.23 -2.75 16 19 C -0.09 -1.43 5.13 28.67 0.15 -1.28 16 20 C -0.11 -1.92 4.90 28.95 0.14 -1.78 16 21 C -0.11 -2.23 5.06 30.35 0.15 -2.08 16 22 H 0.28 15.85 8.72 -92.71 -0.81 15.04 16 23 H 0.40 15.57 7.82 -92.70 -0.72 14.85 16 24 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.36 7.47 -2.39 -0.02 1.34 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.53 3.57 -2.39 -0.01 1.52 16 30 H 0.11 2.07 8.06 -2.91 -0.02 2.04 16 31 H 0.12 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.14 5.62 -2.39 -0.01 1.12 16 34 H 0.05 0.94 7.71 -2.39 -0.02 0.92 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.37 7.63 -2.38 -0.02 1.35 16 37 H 0.08 1.42 6.57 -2.39 -0.02 1.40 16 Total: -1.00 -67.14 285.96 2.72 -64.42 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.16 Total: 14.90 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 2.94 Total: -15.10 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -2.20 Total: -84.29 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.06 Total: -39.06 kcal Atomic # 14 Polarization: 57.26 SS G_CDS: 1.88 Total: 59.14 kcal Total: -67.14 2.72 -64.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890050015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.990 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds