Wall clock time and date at job start Mon Mar 30 2020 17:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30890 * 125.88940 * 2 1 4 4 C 1.33651 * 109.76648 * 179.97438 * 3 2 1 5 5 N 1.39607 * 125.61059 * 179.97438 * 4 3 2 6 6 C 1.46901 * 111.00141 * 179.97438 * 5 4 3 7 7 C 1.53239 * 109.33813 * 172.74509 * 6 5 4 8 8 N 1.47079 * 108.52363 * 53.82938 * 7 6 5 9 9 C 1.36936 * 120.88008 * 128.83239 * 8 7 6 10 10 H 1.08004 * 119.99739 * 206.57669 * 9 8 7 11 11 C 1.38808 * 120.00069 * 26.58213 * 9 8 7 12 12 N 1.31622 * 119.99956 * 17.00039 * 11 9 8 13 13 Si 1.86796 * 119.99962 * 197.00330 * 11 9 8 14 14 H 1.48504 * 109.47411 * 60.00105 * 13 11 9 15 15 H 1.48507 * 109.47483 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47472 * 299.99633 * 13 11 9 17 17 C 1.47080 * 118.23484 * 308.81659 * 8 7 6 18 18 C 1.46904 * 111.00045 * 55.69565 * 5 4 3 19 19 N 1.31202 * 108.77929 * 0.22561 * 4 3 2 20 20 N 1.34336 * 125.89566 * 179.97438 * 2 1 3 21 21 H 0.96999 * 126.76298 * 359.97438 * 20 2 1 22 22 H 1.09001 * 109.47331 * 90.00195 * 1 2 3 23 23 H 1.09003 * 109.46770 * 209.99777 * 1 2 3 24 24 H 1.08995 * 109.47651 * 329.99970 * 1 2 3 25 25 H 1.09000 * 109.48989 * 52.78453 * 6 5 4 26 26 H 1.09001 * 109.50932 * 292.71923 * 6 5 4 27 27 H 1.09002 * 109.62608 * 173.54118 * 7 6 5 28 28 H 1.09000 * 109.62835 * 294.11854 * 7 6 5 29 29 H 0.96998 * 119.99784 * 180.02562 * 12 11 9 30 30 H 1.08991 * 109.62858 * 291.47187 * 17 8 7 31 31 H 1.09007 * 109.62132 * 170.89227 * 17 8 7 32 32 H 1.09003 * 109.48678 * 307.21181 * 18 5 4 33 33 H 1.08998 * 109.49489 * 67.29502 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0604 0.0000 4 6 3.5583 0.6893 0.0006 5 7 4.6544 1.5539 0.0002 6 6 5.9171 0.8032 0.0017 7 6 7.0863 1.7766 -0.1814 8 7 6.9856 2.8260 0.8442 9 6 8.0573 3.1392 1.6370 10 1 7.8979 3.5583 2.6195 11 6 9.3484 2.9182 1.1777 12 7 9.5672 2.7321 -0.1068 13 14 10.7754 2.8846 2.3827 14 1 10.5583 1.8033 3.3771 15 1 12.0398 2.6322 1.6458 16 1 10.8627 4.1912 3.0832 17 6 5.7032 3.5303 0.9954 18 6 4.5888 2.4876 1.1325 19 7 3.6191 -0.6213 -0.0040 20 7 2.2946 -1.0882 0.0005 21 1 2.0055 -2.0141 0.0012 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 5.9125 0.0823 -0.8159 26 1 6.0267 0.2771 0.9500 27 1 8.0292 1.2419 -0.0667 28 1 7.0359 2.2272 -1.1726 29 1 10.4694 2.5772 -0.4276 30 1 5.5199 4.1495 0.1174 31 1 5.7318 4.1552 1.8881 32 1 3.6206 2.9885 1.1351 33 1 4.7170 1.9380 2.0650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931624373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:10 Heat of formation + Delta-G solvation = 127.353264 kcal Electronic energy + Delta-G solvation = -16923.760171 eV Core-core repulsion = 14215.551162 eV Total energy + Delta-G solvation = -2708.209009 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93604 -38.07034 -34.57956 -32.36865 -32.11723 -30.89035 -29.90974 -27.91754 -26.37133 -23.30631 -22.74188 -21.21462 -20.41166 -19.06902 -17.78173 -16.85584 -15.67532 -15.49956 -14.71970 -14.44541 -13.92392 -13.69798 -13.36860 -13.20939 -13.03302 -13.00058 -12.46395 -11.69890 -11.49886 -11.12166 -10.72407 -10.59768 -10.37079 -10.28443 -10.17812 -9.85754 -9.76416 -9.64783 -9.47487 -8.48236 -7.94796 -6.68345 -5.76814 -3.18340 1.73403 2.72129 3.07000 3.40894 3.46615 3.47828 3.70975 4.50524 4.54005 4.74295 5.17819 5.25429 5.39861 5.44133 5.53912 5.70329 5.85876 6.08068 6.13373 6.28180 6.33796 6.42823 6.51932 6.66841 6.89023 7.07883 7.22311 7.47349 7.64081 7.65844 7.80853 8.38673 8.44083 9.21471 9.84516 10.42822 11.32474 Molecular weight = 237.13amu Principal moments of inertia in cm(-1) A = 0.058283 B = 0.005558 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.295567 B = 5036.434787 C = 5200.491398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.286 3.714 3 N -0.544 5.544 4 C 0.414 3.586 5 N -0.434 5.434 6 C 0.043 3.957 7 C 0.177 3.823 8 N -0.596 5.596 9 C -0.254 4.254 10 H 0.067 0.933 11 C 0.003 3.997 12 N -0.903 5.903 13 Si 0.904 3.096 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.148 3.852 18 C 0.055 3.945 19 N -0.352 5.352 20 N -0.489 5.489 21 H 0.436 0.564 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.030 0.970 29 H 0.255 0.745 30 H 0.031 0.969 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.439 -6.891 0.605 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 N -0.276 5.276 4 C 0.044 3.956 5 N -0.158 5.158 6 C -0.085 4.085 7 C 0.051 3.949 8 N -0.319 5.319 9 C -0.383 4.383 10 H 0.085 0.915 11 C -0.196 4.196 12 N -0.548 5.548 13 Si 0.734 3.266 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.021 3.979 18 C -0.073 4.073 19 N -0.188 5.188 20 N -0.208 5.208 21 H 0.280 0.720 22 H 0.108 0.892 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.635 -6.576 0.102 16.962 hybrid contribution 0.452 -1.159 1.047 1.626 sum -15.183 -7.735 1.149 17.078 Atomic orbital electron populations 1.20349 0.83937 1.04725 1.04350 1.24253 0.96376 0.82814 0.95933 1.70232 1.00862 1.29231 1.27301 1.22654 0.90486 0.87529 0.94927 1.59034 0.99294 1.14850 1.42612 1.23009 0.88032 0.96871 1.00615 1.20950 0.94206 0.88263 0.91496 1.44156 1.08085 1.38532 1.41160 1.19160 0.84443 1.39350 0.95396 0.91509 1.25027 0.97531 1.01555 0.95481 1.70014 1.20428 1.52684 1.11646 0.86349 0.81753 0.78090 0.80440 1.21096 1.21603 1.20858 1.21039 0.85299 0.92090 0.99452 1.22759 1.01320 0.94366 0.88874 1.78352 0.95797 1.11501 1.33122 1.47686 1.04306 1.09469 1.59330 0.71961 0.89167 0.90099 0.88482 0.91038 0.94118 0.88620 0.95151 0.93496 0.95068 0.91772 0.90235 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.29 3.62 8.23 -155.73 -1.28 2.33 16 3 N -0.54 -9.39 10.88 -11.13 -0.12 -9.51 16 4 C 0.41 8.03 7.38 -321.17 -2.37 5.66 16 5 N -0.43 -9.08 4.72 -174.71 -0.82 -9.91 16 6 C 0.04 0.94 5.05 -3.70 -0.02 0.92 16 7 C 0.18 4.44 5.42 -3.60 -0.02 4.42 16 8 N -0.60 -15.47 3.04 -172.01 -0.52 -15.99 16 9 C -0.25 -7.07 9.63 -15.06 -0.15 -7.21 16 10 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 11 C 0.00 0.07 4.94 -17.43 -0.09 -0.01 16 12 N -0.90 -26.45 11.15 55.49 0.62 -25.83 16 13 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 18 C 0.06 1.11 5.55 -3.70 -0.02 1.09 16 19 N -0.35 -6.35 11.75 29.99 0.35 -6.00 16 20 N -0.49 -6.26 7.43 32.62 0.24 -6.02 16 21 H 0.44 3.65 8.96 -182.35 -1.63 2.02 16 22 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.49 7.85 -51.93 -0.41 1.09 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 2.61 6.12 -51.93 -0.32 2.29 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.32 7.95 -51.92 -0.41 0.91 16 32 H 0.08 1.46 7.83 -51.93 -0.41 1.05 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 275.16 15.07 4.15 4.15 Total: -1.00 -33.68 275.16 -10.41 -44.09 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.69 Total: -2.13 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -3.59 Total: 10.32 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -0.25 Total: -73.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.68 -10.41 -44.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931624373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.446 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds