Wall clock time and date at job start Mon Mar 30 2020 17:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30890 * 125.88940 * 2 1 4 4 C 1.33651 * 109.76648 * 179.97438 * 3 2 1 5 5 N 1.39607 * 125.61059 * 179.97438 * 4 3 2 6 6 C 1.46901 * 111.00141 * 179.97438 * 5 4 3 7 7 C 1.53239 * 109.33813 * 172.74509 * 6 5 4 8 8 N 1.47079 * 108.52363 * 53.82938 * 7 6 5 9 9 C 1.36936 * 120.88008 * 128.83239 * 8 7 6 10 10 H 1.08004 * 119.99739 * 206.57669 * 9 8 7 11 11 C 1.38808 * 120.00069 * 26.58213 * 9 8 7 12 12 N 1.31622 * 119.99956 * 17.00039 * 11 9 8 13 13 Si 1.86796 * 119.99962 * 197.00330 * 11 9 8 14 14 H 1.48504 * 109.47411 * 60.00105 * 13 11 9 15 15 H 1.48507 * 109.47483 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47472 * 299.99633 * 13 11 9 17 17 C 1.47080 * 118.23484 * 308.81659 * 8 7 6 18 18 C 1.46904 * 111.00045 * 55.69565 * 5 4 3 19 19 N 1.31202 * 108.77929 * 0.22561 * 4 3 2 20 20 N 1.34336 * 125.89566 * 179.97438 * 2 1 3 21 21 H 0.96999 * 126.76298 * 359.97438 * 20 2 1 22 22 H 1.09001 * 109.47331 * 90.00195 * 1 2 3 23 23 H 1.09003 * 109.46770 * 209.99777 * 1 2 3 24 24 H 1.08995 * 109.47651 * 329.99970 * 1 2 3 25 25 H 1.09000 * 109.48989 * 52.78453 * 6 5 4 26 26 H 1.09001 * 109.50932 * 292.71923 * 6 5 4 27 27 H 1.09002 * 109.62608 * 173.54118 * 7 6 5 28 28 H 1.09000 * 109.62835 * 294.11854 * 7 6 5 29 29 H 0.96998 * 119.99784 * 180.02562 * 12 11 9 30 30 H 1.08991 * 109.62858 * 291.47187 * 17 8 7 31 31 H 1.09007 * 109.62132 * 170.89227 * 17 8 7 32 32 H 1.09003 * 109.48678 * 307.21181 * 18 5 4 33 33 H 1.08998 * 109.49489 * 67.29502 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0604 0.0000 4 6 3.5583 0.6893 0.0006 5 7 4.6544 1.5539 0.0002 6 6 5.9171 0.8032 0.0017 7 6 7.0863 1.7766 -0.1814 8 7 6.9856 2.8260 0.8442 9 6 8.0573 3.1392 1.6370 10 1 7.8979 3.5583 2.6195 11 6 9.3484 2.9182 1.1777 12 7 9.5672 2.7321 -0.1068 13 14 10.7754 2.8846 2.3827 14 1 10.5583 1.8033 3.3771 15 1 12.0398 2.6322 1.6458 16 1 10.8627 4.1912 3.0832 17 6 5.7032 3.5303 0.9954 18 6 4.5888 2.4876 1.1325 19 7 3.6191 -0.6213 -0.0040 20 7 2.2946 -1.0882 0.0005 21 1 2.0055 -2.0141 0.0012 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 5.9125 0.0823 -0.8159 26 1 6.0267 0.2771 0.9500 27 1 8.0292 1.2419 -0.0667 28 1 7.0359 2.2272 -1.1726 29 1 10.4694 2.5772 -0.4276 30 1 5.5199 4.1495 0.1174 31 1 5.7318 4.1552 1.8881 32 1 3.6206 2.9885 1.1351 33 1 4.7170 1.9380 2.0650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931624373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:10 Heat of formation + Delta-G solvation = 104.669493 kcal Electronic energy + Delta-G solvation = -16924.743813 eV Core-core repulsion = 14215.551162 eV Total energy + Delta-G solvation = -2709.192651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.14637 -39.76808 -36.38200 -33.77669 -33.40447 -32.48731 -31.73240 -29.02334 -28.12899 -25.19899 -24.46908 -22.58620 -21.68920 -20.86476 -18.99362 -18.73032 -17.19556 -16.88502 -16.61222 -15.87979 -15.49808 -15.40584 -15.09954 -14.85051 -14.41953 -13.68060 -13.59539 -13.30793 -13.08342 -12.71577 -12.61410 -12.48281 -12.20629 -12.07238 -11.81074 -11.66000 -11.55849 -11.01954 -10.74068 -10.56762 -9.46417 -8.76063 -7.89100 -5.34406 0.59913 1.48527 1.51302 1.57987 1.61965 1.84750 2.43236 2.51882 3.27151 3.50052 3.58829 3.70048 4.09917 4.15887 4.39258 4.42959 4.52737 4.60779 4.74994 4.75896 4.78021 4.96704 5.08292 5.16452 5.21387 5.27593 5.56607 5.60752 5.74393 6.14769 6.30954 6.34586 7.09814 7.14815 7.78403 8.34086 9.18981 Molecular weight = 237.13amu Principal moments of inertia in cm(-1) A = 0.058283 B = 0.005558 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.295567 B = 5036.434787 C = 5200.491398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.302 3.698 3 N -0.578 5.578 4 C 0.394 3.606 5 N -0.448 5.448 6 C 0.067 3.933 7 C 0.188 3.812 8 N -0.613 5.613 9 C -0.269 4.269 10 H 0.073 0.927 11 C -0.048 4.048 12 N -0.936 5.936 13 Si 0.972 3.028 14 H -0.279 1.279 15 H -0.293 1.293 16 H -0.273 1.273 17 C 0.147 3.853 18 C 0.071 3.929 19 N -0.381 5.381 20 N -0.473 5.473 21 H 0.456 0.544 22 H 0.111 0.889 23 H 0.117 0.883 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.006 0.994 29 H 0.252 0.748 30 H 0.025 0.975 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.638 -7.688 1.498 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.023 3.977 3 N -0.311 5.311 4 C 0.024 3.976 5 N -0.172 5.172 6 C -0.062 4.062 7 C 0.062 3.938 8 N -0.337 5.337 9 C -0.398 4.398 10 H 0.090 0.910 11 C -0.244 4.244 12 N -0.581 5.581 13 Si 0.799 3.201 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.198 1.198 17 C 0.021 3.979 18 C -0.057 4.057 19 N -0.218 5.218 20 N -0.195 5.195 21 H 0.305 0.695 22 H 0.129 0.871 23 H 0.135 0.865 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.024 0.976 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.892 -7.404 1.006 19.389 hybrid contribution 0.961 -0.963 0.744 1.551 sum -16.931 -8.367 1.750 18.966 Atomic orbital electron populations 1.20683 0.79286 1.06759 1.06242 1.25308 0.98327 0.81398 0.92629 1.70215 1.00183 1.31470 1.29255 1.22496 0.90786 0.87784 0.96522 1.58900 0.99449 1.15568 1.43253 1.22567 0.87762 0.95718 1.00166 1.20650 0.94494 0.88455 0.90246 1.44404 1.09022 1.39293 1.41004 1.19531 0.85314 1.39056 0.95925 0.90964 1.25821 0.99984 1.01579 0.97002 1.70175 1.20640 1.53877 1.13432 0.85284 0.78224 0.78359 0.78208 1.20560 1.21913 1.19849 1.21154 0.84355 0.92664 0.99707 1.22555 1.01101 0.93657 0.88435 1.78202 0.99014 1.11116 1.33438 1.47571 1.02621 1.10834 1.58442 0.69504 0.87089 0.86488 0.87985 0.90518 0.95110 0.91295 0.97595 0.93903 0.95672 0.90463 0.88342 0.95177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.51 71.24 0.75 0.13 16 2 C 0.30 6.73 8.23 138.24 1.14 7.87 16 3 N -0.58 -18.94 10.88 -189.12 -2.06 -21.00 16 4 C 0.39 15.02 7.38 260.92 1.93 16.95 16 5 N -0.45 -18.81 4.72 -706.67 -3.33 -22.14 16 6 C 0.07 2.98 5.05 86.38 0.44 3.41 16 7 C 0.19 9.78 5.42 86.35 0.47 10.25 16 8 N -0.61 -32.47 3.04 -698.13 -2.12 -34.60 16 9 C -0.27 -15.10 9.63 84.03 0.81 -14.29 16 10 H 0.07 3.90 7.88 -2.91 -0.02 3.87 16 11 C -0.05 -2.74 4.94 84.86 0.42 -2.32 16 12 N -0.94 -56.25 11.15 21.65 0.24 -56.01 16 13 Si 0.97 45.31 29.59 68.60 2.03 47.34 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 15 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 C 0.15 6.50 6.69 86.35 0.58 7.08 16 18 C 0.07 2.81 5.55 86.38 0.48 3.29 16 19 N -0.38 -13.35 11.75 -59.03 -0.69 -14.05 16 20 N -0.47 -10.90 7.43 -50.73 -0.38 -11.28 16 21 H 0.46 6.20 8.96 -213.11 -1.91 4.29 16 22 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 24 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.08 3.28 7.85 -2.39 -0.02 3.27 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 3.93 6.12 -2.39 -0.01 3.92 16 28 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 3.16 7.95 -2.38 -0.02 3.14 16 32 H 0.10 3.52 7.83 -2.39 -0.02 3.50 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -74.17 275.16 -0.10 -74.26 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -0.79 Total: 5.10 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 7.00 Total: 32.37 kcal Atomic # 7 Polarization: -150.73 SS G_CDS: -8.34 Total: -159.07 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -74.17 -0.10 -74.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931624373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.934 kcal (2) G-P(sol) polarization free energy of solvation -74.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds