Wall clock time and date at job start Mon Mar 30 2020 17:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00269 * 2 1 4 4 H 1.48501 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47027 * 300.00014 * 3 2 1 6 6 H 1.48501 * 109.47069 * 60.00021 * 3 2 1 7 7 C 1.37874 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99804 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47226 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.46894 * 111.00121 * 180.02562 * 11 10 9 13 13 C 1.55462 * 119.97799 * 25.02342 * 12 11 10 14 14 C 1.52900 * 60.22686 * 247.94630 * 13 12 11 15 15 H 1.08997 * 119.71228 * 112.57034 * 14 13 12 16 16 C 1.54466 * 118.39436 * 269.23043 * 14 13 12 17 17 O 1.44606 * 105.14894 * 40.97706 * 16 14 13 18 18 C 1.43332 * 105.24239 * 38.92804 * 17 16 14 19 19 C 1.52782 * 115.79225 * 191.24627 * 18 17 16 20 20 C 1.53965 * 86.77360 * 267.05606 * 19 18 17 21 21 C 1.52787 * 115.76494 * 90.15008 * 18 17 16 22 22 H 0.97003 * 119.99563 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47162 * 59.99796 * 9 7 2 24 24 H 1.08994 * 109.46976 * 300.00119 * 9 7 2 25 25 H 1.09003 * 109.46938 * 60.00000 * 10 9 7 26 26 H 1.08994 * 109.47518 * 300.00127 * 10 9 7 27 27 H 1.00900 * 111.00329 * 56.04665 * 11 10 9 28 28 H 1.09005 * 118.02609 * 140.70049 * 13 12 11 29 29 H 1.08995 * 117.13401 * 355.59047 * 13 12 11 30 30 H 1.09001 * 110.30244 * 282.06227 * 16 14 13 31 31 H 1.08998 * 110.39416 * 159.93974 * 16 14 13 32 32 H 1.09003 * 113.66395 * 21.52095 * 19 18 17 33 33 H 1.09003 * 113.66970 * 152.58229 * 19 18 17 34 34 H 1.09001 * 113.58450 * 220.69009 * 20 19 18 35 35 H 1.09000 * 113.65609 * 89.89811 * 20 19 18 36 36 H 1.08994 * 113.66849 * 207.43680 * 21 18 17 37 37 H 1.08995 * 113.66490 * 338.50144 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4350 -6.0759 0.0018 13 6 3.8721 -5.9114 0.5714 14 6 3.6710 -6.1424 -0.9266 15 1 3.9109 -5.3476 -1.6328 16 6 3.6680 -7.5950 -1.4520 17 8 2.9186 -8.3497 -0.4722 18 6 1.8412 -7.4904 -0.0783 19 6 1.0460 -7.9401 1.1463 20 6 0.0878 -8.6342 0.1612 21 6 0.5569 -7.6180 -0.8960 22 1 -0.4849 0.8401 0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6239 -2.5566 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6045 -0.8894 27 1 0.8739 -4.9846 -0.7800 28 1 4.2891 -6.7327 1.1544 29 1 4.1693 -4.9123 0.8898 30 1 4.6876 -7.9738 -1.5222 31 1 3.1782 -7.6462 -2.4244 32 1 1.5885 -8.6324 1.7902 33 1 0.5879 -7.1182 1.6966 34 1 -0.9636 -8.5307 0.4293 35 1 0.3663 -9.6627 -0.0686 36 1 -0.0388 -6.7056 -0.9204 37 1 0.7087 -8.0530 -1.8838 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933388274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:21 Heat of formation + Delta-G solvation = -9.799247 kcal Electronic energy + Delta-G solvation = -17225.301318 eV Core-core repulsion = 14582.392522 eV Total energy + Delta-G solvation = -2642.908796 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.18056 -38.06131 -37.08299 -35.35022 -33.63392 -30.67293 -28.32597 -27.11625 -26.32352 -25.55597 -22.60881 -22.13273 -21.04314 -19.85867 -18.57446 -17.88647 -16.90070 -16.49228 -16.43843 -16.13098 -15.75087 -15.13392 -14.62853 -14.42947 -13.93890 -13.84776 -13.42105 -13.35826 -13.12235 -12.91643 -12.58521 -12.46919 -12.37095 -11.98870 -11.75967 -11.59001 -11.46562 -11.31102 -11.20890 -10.86838 -10.58603 -10.54643 -9.09770 -8.22780 -6.34224 1.39412 1.39897 1.52932 2.35588 2.40927 2.67274 3.05499 3.11233 3.38780 3.59308 3.76229 3.85577 3.89161 4.01365 4.13343 4.26613 4.39013 4.54585 4.56622 4.69024 4.73569 4.77241 4.86634 4.87855 5.01418 5.04250 5.06711 5.08479 5.27130 5.35791 5.41142 5.61221 5.71864 5.85953 6.09892 6.21389 6.41090 6.82457 7.35345 8.89640 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.039620 B = 0.005348 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.538776 B = 5233.980919 C = 5657.861268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.087 3.913 11 N -0.638 5.638 12 C 0.016 3.984 13 C -0.125 4.125 14 C -0.245 4.245 15 H 0.114 0.886 16 C 0.080 3.920 17 O -0.357 6.357 18 C 0.117 3.883 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.151 4.151 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.004 1.004 25 H 0.061 0.939 26 H 0.021 0.979 27 H 0.342 0.658 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 -16.548 -1.954 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.268 5.268 12 C -0.077 4.077 13 C -0.163 4.163 14 C -0.267 4.267 15 H 0.132 0.868 16 C 0.003 3.997 17 O -0.276 6.276 18 C 0.077 3.923 19 C -0.157 4.157 20 C -0.162 4.162 21 C -0.188 4.188 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.015 0.985 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.163 0.837 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.672 -16.662 -1.210 17.346 hybrid contribution 0.519 1.525 -1.041 1.918 sum 5.191 -15.136 -2.251 16.159 Atomic orbital electron populations 1.70109 1.07799 1.27794 1.51370 1.25948 0.95745 1.03309 0.94562 0.85383 0.79019 0.78695 0.77843 1.18628 1.20293 1.20321 1.21587 0.93463 0.92134 1.50987 0.92236 1.18916 0.94254 0.92113 0.95239 1.21844 0.95829 0.87632 0.98877 1.60047 1.18013 1.00141 1.48643 1.23579 0.86202 0.92603 1.05333 1.23396 0.94877 1.03280 0.94733 1.24528 1.08159 0.99822 0.94156 0.86844 1.22951 0.97621 0.87470 0.91621 1.88943 1.40610 1.38417 1.59584 1.22011 0.87247 0.84918 0.98160 1.22835 0.96606 1.00725 0.95526 1.22806 0.99853 0.98364 0.95130 1.23240 0.95816 1.00776 0.98995 0.92686 0.98910 0.98512 0.92030 0.96117 0.83716 0.87463 0.88261 0.87067 0.90492 0.90497 0.88902 0.90012 0.89243 0.89210 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.97 44.08 29.54 68.60 2.03 46.10 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.71 5.23 29.85 0.16 1.87 16 10 C 0.09 3.62 4.72 86.30 0.41 4.03 16 11 N -0.64 -22.78 6.58 -462.12 -3.04 -25.82 16 12 C 0.02 0.49 3.19 5.17 0.02 0.51 16 13 C -0.13 -3.57 9.28 31.41 0.29 -3.28 16 14 C -0.25 -6.58 6.52 -9.74 -0.06 -6.64 16 15 H 0.11 3.17 7.50 -2.39 -0.02 3.15 16 16 C 0.08 1.78 7.53 72.48 0.55 2.32 16 17 O -0.36 -9.25 11.18 -148.98 -1.67 -10.92 16 18 C 0.12 3.06 1.02 -10.74 -0.01 3.05 16 19 C -0.12 -2.90 7.63 30.85 0.24 -2.66 16 20 C -0.12 -2.55 8.09 31.24 0.25 -2.30 16 21 C -0.15 -3.51 7.45 30.85 0.23 -3.28 16 22 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 23 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 24 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.06 2.60 6.55 -2.39 -0.02 2.58 16 26 H 0.02 0.85 7.13 -2.39 -0.02 0.84 16 27 H 0.34 11.86 7.25 -89.69 -0.65 11.21 16 28 H 0.11 2.78 8.13 -2.38 -0.02 2.77 16 29 H 0.10 3.02 6.30 -2.39 -0.02 3.00 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.09 2.24 6.60 -2.39 -0.02 2.22 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -62.97 295.91 0.76 -62.21 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.40 Total: 21.14 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 2.76 Total: -36.43 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -2.76 Total: -82.11 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -1.67 Total: -10.92 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -62.97 0.76 -62.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933388274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.407 kcal (2) G-P(sol) polarization free energy of solvation -62.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds