Wall clock time and date at job start Mon Mar 30 2020 17:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35465 * 116.99959 * 2 1 4 4 N 1.32327 * 119.19263 * 359.97438 * 3 2 1 5 5 C 1.32283 * 120.75830 * 179.97438 * 4 3 2 6 6 C 1.38624 * 119.17257 * 0.02562 * 5 4 3 7 7 C 1.38569 * 118.52140 * 0.27632 * 6 5 4 8 8 C 1.50698 * 120.41583 * 179.72329 * 7 6 5 9 9 N 1.46901 * 109.47083 * 94.99541 * 8 7 6 10 10 C 1.46904 * 110.99965 * 293.95762 * 9 8 7 11 11 C 1.46896 * 110.99811 * 170.00613 * 9 8 7 12 12 C 1.50700 * 109.47146 * 189.99867 * 11 9 8 13 13 H 1.08006 * 119.99965 * 0.02562 * 12 11 9 14 14 C 1.37880 * 120.00277 * 179.97438 * 12 11 9 15 15 N 1.31515 * 119.99681 * 180.02562 * 14 12 11 16 16 Si 1.86790 * 119.99916 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.46896 * 89.99933 * 16 14 12 18 18 H 1.48497 * 109.47404 * 209.99918 * 16 14 12 19 19 H 1.48500 * 109.47095 * 330.00087 * 16 14 12 20 20 N 1.32307 * 119.19260 * 180.02562 * 3 2 1 21 21 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47255 * 299.99708 * 1 2 3 23 23 H 1.09005 * 109.47212 * 60.00321 * 1 2 3 24 24 H 1.08001 * 120.41739 * 180.02562 * 5 4 3 25 25 H 1.08002 * 120.73663 * 179.97438 * 6 5 4 26 26 H 1.08997 * 109.47599 * 214.99893 * 8 7 6 27 27 H 1.09007 * 109.46691 * 334.99873 * 8 7 6 28 28 H 1.08996 * 109.47340 * 59.99834 * 10 9 8 29 29 H 1.08998 * 109.46839 * 180.02562 * 10 9 8 30 30 H 1.09004 * 109.47251 * 299.99776 * 10 9 8 31 31 H 1.09003 * 109.47068 * 309.99531 * 11 9 8 32 32 H 1.08998 * 109.47358 * 69.99964 * 11 9 8 33 33 H 0.97005 * 119.99265 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3076 2.3065 -0.0005 5 6 1.8758 3.5011 0.0000 6 6 3.2590 3.5915 0.0005 7 6 3.9987 2.4198 -0.0054 8 6 5.5049 2.4683 -0.0113 9 7 6.0037 2.3601 1.3661 10 6 5.6192 3.5354 2.1591 11 6 7.4596 2.1657 1.3850 12 6 7.9016 1.8155 2.7825 13 1 7.1737 1.7440 3.5772 14 6 9.2352 1.5853 3.0465 15 7 9.6207 1.2792 4.2661 16 14 10.4941 1.7081 1.6721 17 1 11.0060 3.0999 1.5927 18 1 11.6209 0.7813 1.9485 19 1 9.8562 1.3410 0.3823 20 7 3.3660 1.2576 -0.0005 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.2695 4.3949 0.0000 25 1 3.7493 4.5539 0.0005 26 1 5.8928 1.6401 -0.6043 27 1 5.8362 3.4120 -0.4447 28 1 4.5326 3.6158 2.1863 29 1 6.0016 3.4296 3.1743 30 1 6.0387 4.4332 1.7050 31 1 7.7269 1.3561 0.7058 32 1 7.9530 3.0843 1.0674 33 1 10.5590 1.1176 4.4518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140695057.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:48 Heat of formation + Delta-G solvation = 31.832821 kcal Electronic energy + Delta-G solvation = -16415.692394 eV Core-core repulsion = 13671.048556 eV Total energy + Delta-G solvation = -2744.643837 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.18827 -38.47680 -36.76563 -33.82114 -32.52551 -31.48871 -28.32228 -27.68817 -27.17067 -24.65381 -23.64415 -22.04648 -20.28866 -18.40502 -17.76976 -16.82997 -16.38225 -15.73160 -14.99023 -14.90675 -14.52991 -14.20102 -14.10429 -13.67693 -13.40220 -12.49976 -12.29308 -12.05221 -11.75394 -11.46334 -11.33008 -11.16683 -11.00291 -10.77128 -10.53165 -10.29901 -9.85570 -9.33265 -9.06898 -8.96646 -8.58050 -7.49172 -6.05132 -4.02924 1.04019 1.11024 2.58762 3.28138 3.36449 3.38011 3.78147 4.02030 4.41792 4.46580 4.66632 4.91449 5.07789 5.13069 5.14709 5.17707 5.27546 5.42587 5.55209 5.80666 5.87386 5.99763 6.12556 6.17507 6.61493 6.77840 6.83281 6.93072 7.17948 7.54528 7.79605 7.94235 8.18338 8.62952 9.03311 9.55597 11.07984 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039451 B = 0.005245 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.572582 B = 5337.301698 C = 5557.762263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.290 6.290 3 C 0.497 3.503 4 N -0.578 5.578 5 C 0.181 3.819 6 C -0.264 4.264 7 C 0.240 3.760 8 C 0.094 3.906 9 N -0.520 5.520 10 C 0.032 3.968 11 C 0.164 3.836 12 C -0.510 4.510 13 H 0.081 0.919 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.266 1.266 20 N -0.503 5.503 21 H 0.101 0.899 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.170 0.830 25 H 0.148 0.852 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.016 0.984 31 H 0.032 0.968 32 H -0.013 1.013 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.707 5.039 -10.681 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.191 6.191 3 C 0.194 3.806 4 N -0.308 5.308 5 C 0.016 3.984 6 C -0.287 4.287 7 C 0.092 3.908 8 C -0.035 4.035 9 N -0.245 5.245 10 C -0.117 4.117 11 C 0.038 3.962 12 C -0.548 4.548 13 H 0.099 0.901 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.703 3.297 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.191 1.191 20 N -0.229 5.229 21 H 0.119 0.881 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.187 0.813 25 H 0.166 0.834 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.005 0.995 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.166 3.339 -10.352 19.485 hybrid contribution 1.253 1.675 -0.918 2.284 sum -14.913 5.014 -11.270 19.353 Atomic orbital electron populations 1.22941 0.76110 1.03310 1.02577 1.86109 1.22989 1.22870 1.87151 1.20738 0.86234 0.84614 0.89018 1.67995 1.41575 0.99336 1.21896 1.22843 0.92437 0.94262 0.88813 1.22635 0.96036 1.00971 1.09052 1.21601 0.97186 0.86317 0.85699 1.21104 0.86731 1.01848 0.93826 1.61925 1.16379 1.38856 1.07302 1.22358 0.98724 0.90196 1.00400 1.20236 0.81614 0.95103 0.99248 1.20999 0.93547 1.47034 0.93233 0.90102 1.24887 0.98214 0.94801 0.95371 1.69895 1.16515 1.47989 1.19435 0.86855 0.81541 0.78147 0.83160 1.20344 1.21103 1.19083 1.67454 1.07038 1.30361 1.18019 0.88066 0.92020 0.92164 0.81330 0.83428 0.88722 0.93018 0.93581 0.89756 0.96545 0.94956 0.99501 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 10.36 101.05 1.05 1.51 16 2 O -0.29 -4.42 10.55 -18.09 -0.19 -4.61 16 3 C 0.50 8.16 8.49 -91.25 -0.77 7.39 16 4 N -0.58 -8.08 9.23 -14.73 -0.14 -8.21 16 5 C 0.18 2.08 11.30 -17.21 -0.19 1.89 16 6 C -0.26 -3.31 8.51 -39.32 -0.33 -3.64 16 7 C 0.24 3.88 5.66 -82.26 -0.47 3.41 16 8 C 0.09 1.60 5.33 -4.98 -0.03 1.58 16 9 N -0.52 -10.98 4.74 -245.82 -1.17 -12.15 16 10 C 0.03 0.59 9.04 60.07 0.54 1.14 16 11 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 12 C -0.51 -14.51 9.01 -34.44 -0.31 -14.82 16 13 H 0.08 2.52 7.37 -52.48 -0.39 2.14 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 16 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 20 N -0.50 -9.21 10.40 -10.95 -0.11 -9.32 16 21 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 23 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 24 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 25 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.09 1.64 7.93 -51.93 -0.41 1.23 16 27 H 0.05 0.75 8.04 -51.92 -0.42 0.34 16 28 H 0.05 0.77 6.42 -51.93 -0.33 0.44 16 29 H 0.08 1.79 6.76 -51.93 -0.35 1.44 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.03 0.79 6.99 -51.93 -0.36 0.43 16 32 H -0.01 -0.29 7.55 -51.93 -0.39 -0.69 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 282.02 15.07 4.25 4.25 Total: -1.00 -33.42 282.02 -6.24 -39.66 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -4.35 Total: -3.71 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -0.63 Total: 4.26 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.64 Total: -56.49 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.19 Total: -4.61 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.42 -6.24 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140695057.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.489 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds