Wall clock time and date at job start Mon Mar 30 2020 17:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36940 * 119.99843 * 2 1 4 4 H 1.08000 * 119.99930 * 202.35181 * 3 2 1 5 5 C 1.38808 * 119.99930 * 22.34774 * 3 2 1 6 6 N 1.31620 * 120.00331 * 11.34429 * 5 3 2 7 7 Si 1.86797 * 119.99999 * 191.35123 * 5 3 2 8 8 H 1.48503 * 109.47131 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47510 * 119.99908 * 7 5 3 10 10 H 1.48509 * 109.47272 * 239.99957 * 7 5 3 11 11 C 1.46495 * 120.00200 * 179.97438 * 2 1 3 12 12 C 1.50702 * 109.47306 * 270.00308 * 11 2 1 13 13 C 1.34971 * 125.95385 * 94.99766 * 12 11 2 14 14 N 1.35942 * 106.63517 * 180.02562 * 13 12 11 15 15 C 1.35724 * 107.47505 * 0.05566 * 14 13 12 16 16 N 1.29781 * 108.61057 * 359.92500 * 15 14 13 17 17 C 1.51041 * 122.91705 * 179.88991 * 15 14 13 18 18 O 1.43449 * 107.78583 * 345.44615 * 17 15 14 19 19 C 1.43068 * 114.05259 * 49.63749 * 18 17 15 20 20 C 1.46536 * 128.99260 * 180.09536 * 14 13 12 21 21 H 1.08996 * 109.47404 * 274.20650 * 1 2 3 22 22 H 1.08999 * 109.47102 * 34.21392 * 1 2 3 23 23 H 1.09000 * 109.46361 * 154.21203 * 1 2 3 24 24 H 0.96997 * 120.00686 * 179.97438 * 6 5 3 25 25 H 1.08997 * 109.47403 * 150.00320 * 11 2 1 26 26 H 1.08998 * 109.47144 * 29.99964 * 11 2 1 27 27 H 1.07997 * 126.67786 * 0.03755 * 13 12 11 28 28 H 1.08997 * 109.79611 * 105.01651 * 17 15 14 29 29 H 1.08999 * 109.79715 * 225.87478 * 17 15 14 30 30 H 1.08997 * 109.43039 * 169.82055 * 19 18 17 31 31 H 1.08990 * 109.42689 * 49.91045 * 19 18 17 32 32 H 1.08996 * 109.73850 * 283.29824 * 20 14 13 33 33 H 1.09006 * 109.73771 * 43.94865 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1689 1.2211 -0.3557 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0936 7 14 2.3365 4.0048 0.1686 8 1 3.6142 3.8168 -0.5645 9 1 1.4266 4.8616 -0.6334 10 1 2.6073 4.6572 1.4749 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 6 1.6831 -2.5536 2.1373 14 7 2.2661 -2.6670 3.3601 15 6 3.3725 -1.8809 3.3586 16 7 3.4737 -1.3105 2.1973 17 6 4.2849 -1.7457 4.5546 18 8 3.5952 -2.2778 5.6943 19 6 3.0289 -3.5741 5.4804 20 6 1.8423 -3.4659 4.5131 21 1 -0.3634 0.0754 1.0248 22 1 -0.3633 0.8498 -0.5778 23 1 -0.3632 -0.9254 -0.4471 24 1 -0.0461 3.0774 1.4134 25 1 3.1500 -1.1386 -0.5132 26 1 1.6085 -2.0285 -0.5129 27 1 0.7828 -3.0478 1.8034 28 1 5.2033 -2.3073 4.3836 29 1 4.5199 -0.6947 4.7228 30 1 2.6857 -3.9813 6.4314 31 1 3.7847 -4.2341 5.0548 32 1 1.0047 -2.9778 5.0113 33 1 1.5445 -4.4609 4.1821 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141534759.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:50 Heat of formation + Delta-G solvation = 28.526066 kcal Electronic energy + Delta-G solvation = -17056.970885 eV Core-core repulsion = 14312.183656 eV Total energy + Delta-G solvation = -2744.787229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.18282 -39.27528 -37.37384 -35.02649 -33.46153 -31.49060 -30.57184 -28.58115 -27.85975 -25.87310 -24.57976 -23.28688 -21.23163 -20.36780 -18.73156 -18.39270 -17.44689 -16.88461 -16.60552 -16.07347 -15.87957 -15.37740 -15.26244 -14.91153 -14.64372 -14.36861 -13.69723 -13.33545 -13.03001 -12.83276 -12.70868 -12.52982 -12.29499 -12.08832 -11.99523 -11.83477 -11.19350 -10.76707 -10.62530 -10.37545 -9.13713 -8.76141 -7.80124 -5.25983 1.12153 1.43186 1.44468 1.55700 1.80407 2.19062 2.55769 2.71704 3.23604 3.36939 3.54227 3.89036 3.93393 4.03483 4.17619 4.29118 4.44110 4.50590 4.57885 4.65532 4.70676 4.86255 4.93214 5.13554 5.34624 5.37473 5.64454 5.73876 5.80631 5.96577 6.33342 6.37229 7.18471 7.31909 7.90885 8.32376 9.23835 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030469 B = 0.007208 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.757892 B = 3883.908081 C = 4291.037489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.607 5.607 3 C -0.241 4.241 4 H 0.063 0.937 5 C -0.059 4.059 6 N -0.943 5.943 7 Si 0.967 3.033 8 H -0.268 1.268 9 H -0.286 1.286 10 H -0.297 1.297 11 C 0.223 3.777 12 C -0.028 4.028 13 C -0.046 4.046 14 N -0.461 5.461 15 C 0.136 3.864 16 N -0.506 5.506 17 C 0.159 3.841 18 O -0.389 6.389 19 C 0.047 3.953 20 C 0.064 3.936 21 H -0.006 1.006 22 H 0.019 0.981 23 H 0.038 0.962 24 H 0.244 0.756 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.196 0.804 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.152 0.848 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -15.925 8.108 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.329 5.329 3 C -0.372 4.372 4 H 0.081 0.919 5 C -0.253 4.253 6 N -0.591 5.591 7 Si 0.795 3.205 8 H -0.192 1.192 9 H -0.212 1.212 10 H -0.225 1.225 11 C 0.096 3.904 12 C -0.159 4.159 13 C -0.180 4.180 14 N -0.146 5.146 15 C -0.127 4.127 16 N -0.227 5.227 17 C 0.081 3.919 18 O -0.306 6.306 19 C -0.030 4.030 20 C -0.058 4.058 21 H 0.012 0.988 22 H 0.038 0.962 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.213 0.787 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.170 0.830 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.837 -15.278 8.196 17.757 hybrid contribution -0.633 0.721 -0.045 0.961 sum 3.204 -14.557 8.151 16.988 Atomic orbital electron populations 1.20516 0.82307 0.96359 0.97090 1.44313 1.02243 1.01352 1.84989 1.19485 0.97610 0.86405 1.33665 0.91933 1.25763 0.98650 1.01802 0.99073 1.70255 1.19369 1.26942 1.42509 0.85194 0.78192 0.80243 0.76837 1.19208 1.21234 1.22460 1.19342 0.95852 0.87190 0.88012 1.22366 0.93928 0.99009 1.00619 1.22544 1.02588 1.06973 0.85862 1.45385 1.21044 1.35992 1.12165 1.24502 0.93214 0.97070 0.97927 1.69707 1.26388 1.23758 1.02804 1.21211 0.91095 1.01906 0.77680 1.88118 1.72859 1.34766 1.34853 1.23275 0.93742 0.84474 1.01478 1.23026 1.00267 0.97512 0.84945 0.98807 0.96212 0.94330 0.94687 0.93574 0.89721 0.78742 0.87683 0.86762 0.83044 0.90338 0.89422 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.43 9.01 127.77 1.15 10.58 16 2 N -0.61 -32.78 2.91 -731.32 -2.13 -34.91 16 3 C -0.24 -14.42 9.67 84.03 0.81 -13.61 16 4 H 0.06 3.76 7.84 -2.91 -0.02 3.73 16 5 C -0.06 -3.58 5.13 84.86 0.44 -3.14 16 6 N -0.94 -59.58 10.59 21.65 0.23 -59.35 16 7 Si 0.97 48.78 29.57 68.60 2.03 50.81 16 8 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 9 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 11 C 0.22 10.02 6.24 85.63 0.53 10.55 16 12 C -0.03 -1.24 6.69 41.41 0.28 -0.96 16 13 C -0.05 -1.65 11.60 83.30 0.97 -0.69 16 14 N -0.46 -14.78 3.14 -513.50 -1.61 -16.39 16 15 C 0.14 5.06 7.79 138.23 1.08 6.13 16 16 N -0.51 -23.38 11.24 -175.50 -1.97 -25.35 16 17 C 0.16 4.42 7.29 71.34 0.52 4.94 16 18 O -0.39 -9.53 10.79 -148.98 -1.61 -11.13 16 19 C 0.05 0.74 6.82 72.14 0.49 1.23 16 20 C 0.06 1.24 7.31 86.53 0.63 1.87 16 21 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 22 H 0.02 1.08 7.19 -2.39 -0.02 1.07 16 23 H 0.04 1.63 7.84 -2.39 -0.02 1.61 16 24 H 0.24 14.96 8.31 -92.71 -0.77 14.18 16 25 H 0.05 2.12 8.03 -2.39 -0.02 2.10 16 26 H 0.08 3.13 7.86 -2.39 -0.02 3.11 16 27 H 0.20 5.61 8.06 -2.91 -0.02 5.59 16 28 H 0.11 2.29 8.14 -2.39 -0.02 2.28 16 29 H 0.11 3.29 8.14 -2.39 -0.02 3.28 16 30 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -80.16 278.47 2.93 -77.22 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.10 Total: 2.20 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.90 Total: 16.91 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -5.48 Total: -136.01 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.61 Total: -11.13 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Total: -80.16 2.93 -77.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141534759.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.749 kcal (2) G-P(sol) polarization free energy of solvation -80.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds