Wall clock time and date at job start Mon Mar 30 2020 17:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35796 * 116.99695 * 2 1 4 4 C 1.39398 * 120.05306 * 180.02562 * 3 2 1 5 5 C 1.38415 * 117.97912 * 179.97438 * 4 3 2 6 6 C 1.39542 * 117.94725 * 359.97438 * 5 4 3 7 7 N 1.39304 * 120.09453 * 179.97438 * 6 5 4 8 8 C 1.46495 * 119.99887 * 0.02562 * 7 6 5 9 9 C 1.53003 * 109.46936 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47062 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47211 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99951 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99804 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99643 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00119 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47099 * 90.00704 * 15 13 11 17 17 H 1.48508 * 109.47078 * 210.00465 * 15 13 11 18 18 H 1.48499 * 109.47278 * 330.00304 * 15 13 11 19 19 N 1.32312 * 119.81401 * 0.02562 * 6 5 4 20 20 N 1.28346 * 122.15980 * 359.97438 * 19 6 5 21 21 H 1.08997 * 109.46504 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47094 * 300.00477 * 1 2 3 23 23 H 1.08994 * 109.46784 * 60.00478 * 1 2 3 24 24 H 1.08002 * 121.00775 * 0.24052 * 4 3 2 25 25 H 1.07999 * 121.02527 * 180.02562 * 5 4 3 26 26 H 0.97006 * 120.00203 * 179.97438 * 7 6 5 27 27 H 1.09002 * 109.47033 * 299.99392 * 8 7 6 28 28 H 1.09002 * 109.47512 * 59.99733 * 8 7 6 29 29 H 1.08997 * 109.46963 * 299.99227 * 9 8 7 30 30 H 1.08990 * 109.47634 * 60.00005 * 9 8 7 31 31 H 1.08994 * 109.47280 * 300.00087 * 10 9 8 32 32 H 1.09004 * 109.46945 * 59.99673 * 10 9 8 33 33 H 0.97001 * 120.00078 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4375 1.2843 -0.0005 5 6 4.0208 2.5396 -0.0011 6 6 3.1784 3.6521 -0.0016 7 7 3.7177 4.9365 -0.0016 8 6 5.1710 5.1207 -0.0016 9 6 5.4956 6.6159 -0.0022 10 6 7.0135 6.8083 -0.0016 11 6 7.3332 8.2810 -0.0029 12 1 6.5337 9.0071 -0.0036 13 6 8.6463 8.7014 -0.0031 14 7 8.9253 9.9866 -0.0037 15 14 10.0290 7.4455 -0.0012 16 1 10.3959 7.1110 -1.4007 17 1 11.2105 8.0111 0.6985 18 1 9.5801 6.2160 0.7003 19 7 1.8661 3.4836 -0.0010 20 7 1.3268 2.3189 -0.0005 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 4.0424 0.3896 -0.0048 25 1 5.0946 2.6544 -0.0019 26 1 3.1309 5.7090 -0.0023 27 1 5.5961 4.6567 0.8884 28 1 5.5962 4.6566 -0.8916 29 1 5.0707 7.0795 -0.8925 30 1 5.0706 7.0804 0.8874 31 1 7.4381 6.3448 0.8887 32 1 7.4389 6.3437 -0.8912 33 1 9.8491 10.2824 -0.0035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:57 Heat of formation + Delta-G solvation = -8.033795 kcal Electronic energy + Delta-G solvation = -15715.224413 eV Core-core repulsion = 12968.851830 eV Total energy + Delta-G solvation = -2746.372584 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.10578 -39.50176 -37.75500 -35.53231 -33.99966 -33.62049 -31.17742 -28.76200 -28.10114 -25.41235 -24.94051 -23.36451 -22.00415 -19.56358 -18.99620 -18.77358 -18.17112 -17.22187 -16.40751 -16.37569 -15.83355 -15.30325 -15.18307 -15.16681 -14.74571 -14.45815 -13.93079 -13.73037 -12.90180 -12.85941 -12.69627 -12.64589 -12.49584 -11.85702 -11.68211 -11.66866 -11.33390 -11.29266 -10.75910 -10.73678 -10.51068 -8.77466 -8.26757 -6.31859 -0.16720 0.27820 1.40808 1.42975 1.54412 1.89301 2.25054 2.39738 2.63707 3.09412 3.33606 3.65451 3.79924 4.02636 4.08148 4.24347 4.43533 4.43927 4.48698 4.55906 4.76230 4.81731 4.88264 4.93412 5.04751 5.09286 5.49548 5.60240 5.67389 5.93445 6.17229 6.30467 6.56083 6.77645 7.33058 7.81559 8.90269 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.066761 B = 0.003725 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.304513 B = 7514.763412 C = 7903.018618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.313 6.313 3 C 0.194 3.806 4 C -0.083 4.083 5 C -0.141 4.141 6 C 0.313 3.687 7 N -0.712 5.712 8 C 0.132 3.868 9 C -0.105 4.105 10 C -0.008 4.008 11 C -0.535 4.535 12 H 0.028 0.972 13 C -0.002 4.002 14 N -0.956 5.956 15 Si 0.955 3.045 16 H -0.267 1.267 17 H -0.290 1.290 18 H -0.235 1.235 19 N -0.318 5.318 20 N -0.290 5.290 21 H 0.128 0.872 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.189 0.811 25 H 0.182 0.818 26 H 0.408 0.592 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.438 -22.460 0.032 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.218 6.218 3 C 0.002 3.998 4 C -0.112 4.112 5 C -0.174 4.174 6 C 0.068 3.932 7 N -0.347 5.347 8 C 0.009 3.991 9 C -0.143 4.143 10 C -0.046 4.046 11 C -0.574 4.574 12 H 0.046 0.954 13 C -0.198 4.198 14 N -0.597 5.597 15 Si 0.778 3.222 16 H -0.192 1.192 17 H -0.216 1.216 18 H -0.158 1.158 19 N -0.169 5.169 20 N -0.143 5.143 21 H 0.146 0.854 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.206 0.794 25 H 0.199 0.801 26 H 0.244 0.756 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.529 -21.981 0.035 24.821 hybrid contribution 1.407 0.316 -0.026 1.442 sum -10.122 -21.665 0.009 23.913 Atomic orbital electron populations 1.23097 0.76051 1.04943 1.02035 1.86204 1.24001 1.22742 1.88816 1.21513 0.91888 0.86914 0.99479 1.21734 0.91598 1.00198 0.97642 1.22142 1.03010 0.90065 1.02169 1.20228 0.91048 0.88327 0.93558 1.44584 1.07300 1.03167 1.79666 1.21580 0.78022 0.97027 1.02520 1.21466 0.97217 0.94054 1.01560 1.19448 0.93499 0.94264 0.97424 1.21535 0.92516 0.92950 1.50351 0.95364 1.26125 1.02226 0.97366 0.94106 1.70090 1.20094 1.16719 1.52802 0.85586 0.77458 0.79914 0.79240 1.19158 1.21642 1.15830 1.72593 1.09816 1.14323 1.20217 1.72590 1.32216 0.94251 1.15216 0.85352 0.92821 0.92829 0.79421 0.80090 0.75638 0.90460 0.90409 0.92645 0.92656 0.95219 0.95363 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.40 113.37 1.18 1.71 16 2 O -0.31 -6.54 10.49 -91.27 -0.96 -7.50 16 3 C 0.19 4.65 7.57 84.93 0.64 5.29 16 4 C -0.08 -1.54 10.15 22.59 0.23 -1.32 16 5 C -0.14 -2.81 9.41 22.63 0.21 -2.60 16 6 C 0.31 8.16 7.75 133.09 1.03 9.19 16 7 N -0.71 -18.01 5.74 -344.51 -1.98 -19.98 16 8 C 0.13 3.27 4.92 86.38 0.43 3.69 16 9 C -0.10 -3.53 5.27 30.60 0.16 -3.36 16 10 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 11 C -0.54 -29.71 9.66 25.60 0.25 -29.47 16 12 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 13 C 0.00 -0.12 5.47 84.66 0.46 0.35 16 14 N -0.96 -59.43 13.96 21.45 0.30 -59.13 16 15 Si 0.96 42.04 27.47 68.60 1.88 43.92 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 19 N -0.32 -9.67 11.52 -54.99 -0.63 -10.30 16 20 N -0.29 -8.38 10.39 -170.23 -1.77 -10.15 16 21 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.05 0.90 8.11 -2.39 -0.02 0.88 16 23 H 0.05 0.90 8.11 -2.39 -0.02 0.88 16 24 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 25 H 0.18 2.57 6.84 -2.91 -0.02 2.55 16 26 H 0.41 10.45 8.60 -92.70 -0.80 9.65 16 27 H 0.08 1.71 7.97 -2.39 -0.02 1.69 16 28 H 0.08 1.71 7.97 -2.39 -0.02 1.69 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 32 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 33 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -69.94 286.11 1.82 -68.12 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.26 Total: 11.77 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.71 Total: -16.75 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -4.08 Total: -99.57 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.96 Total: -7.50 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.92 kcal Total: -69.94 1.82 -68.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.085 kcal (2) G-P(sol) polarization free energy of solvation -69.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds