Wall clock time and date at job start Mon Mar 30 2020 17:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32178 * 119.91252 * 2 1 4 4 C 1.33103 * 120.09436 * 179.97438 * 3 2 1 5 5 N 1.38001 * 120.04737 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00015 * 179.97438 * 5 4 3 7 7 C 1.46494 * 119.99995 * 359.97438 * 5 4 3 8 8 N 1.32860 * 119.91155 * 0.02562 * 4 3 2 9 9 C 1.32875 * 119.82204 * 359.97438 * 8 4 3 10 10 N 1.38135 * 120.04844 * 179.97438 * 9 8 4 11 11 C 1.46505 * 119.99704 * 0.02562 * 10 9 8 12 12 C 1.37009 * 120.00481 * 179.97438 * 10 9 8 13 13 H 1.08003 * 119.99505 * 22.43072 * 12 10 9 14 14 C 1.38860 * 120.00386 * 202.43113 * 12 10 9 15 15 N 1.31522 * 119.99757 * 11.07704 * 14 12 10 16 16 Si 1.86793 * 120.00026 * 191.07739 * 14 12 10 17 17 H 1.48496 * 109.47370 * 60.00056 * 16 14 12 18 18 H 1.48506 * 109.47343 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47374 * 299.99740 * 16 14 12 20 20 N 1.32127 * 119.91228 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.47306 * 90.00115 * 1 2 3 22 22 H 1.09001 * 109.47189 * 209.99915 * 1 2 3 23 23 H 1.09001 * 109.47413 * 330.00025 * 1 2 3 24 24 H 1.08998 * 109.47529 * 89.99999 * 6 5 4 25 25 H 1.09002 * 109.47016 * 210.00306 * 6 5 4 26 26 H 1.08999 * 109.47258 * 329.99492 * 6 5 4 27 27 H 1.08999 * 109.47223 * 89.99549 * 7 5 4 28 28 H 1.08993 * 109.47363 * 209.99952 * 7 5 4 29 29 H 1.09008 * 109.47097 * 330.00058 * 7 5 4 30 30 H 1.08999 * 109.47319 * 94.00590 * 11 10 9 31 31 H 1.09003 * 109.46946 * 214.00647 * 11 10 9 32 32 H 1.09003 * 109.47141 * 334.00433 * 11 10 9 33 33 H 0.97002 * 119.99357 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1661 1.1457 0.0000 4 6 3.4971 1.1499 0.0005 5 7 4.1843 2.3467 0.0010 6 6 5.6493 2.3501 0.0022 7 6 3.4489 3.6136 0.0005 8 7 4.1633 0.0004 0.0005 9 6 3.4972 -1.1493 0.0005 10 7 4.1851 -2.3472 0.0000 11 6 5.6502 -2.3505 0.0000 12 6 3.4974 -3.5322 0.0005 13 1 2.4783 -3.5652 -0.3556 14 6 4.1106 -4.6907 0.4589 15 7 5.2618 -4.6195 1.0908 16 14 3.3004 -6.3502 0.1779 17 1 3.1398 -6.5821 -1.2800 18 1 4.1505 -7.4207 0.7582 19 1 1.9672 -6.3673 0.8318 20 7 2.1658 -1.1453 0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 6.0135 2.3510 -1.0252 25 1 6.0102 3.2409 0.5164 26 1 6.0144 1.4610 0.5164 27 1 3.2656 3.9278 1.0280 28 1 4.0365 4.3746 -0.5128 29 1 2.4971 3.4810 -0.5141 30 1 6.0134 -2.4236 1.0251 31 1 6.0115 -3.2031 -0.5752 32 1 6.0156 -1.4275 -0.4500 33 1 5.6903 -5.4288 1.4107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:59 Heat of formation + Delta-G solvation = 96.963941 kcal Electronic energy + Delta-G solvation = -16984.448937 eV Core-core repulsion = 14274.922148 eV Total energy + Delta-G solvation = -2709.526789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.128 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17361 -36.87706 -35.96165 -33.04759 -31.91357 -30.72050 -28.78692 -27.49112 -26.43772 -25.37220 -24.33907 -20.85712 -20.81183 -18.03895 -17.12783 -16.25117 -15.43524 -15.20847 -14.33519 -14.12243 -14.02676 -13.37006 -13.08763 -12.76937 -12.72567 -12.27866 -12.08897 -11.94046 -11.77082 -11.63582 -11.47313 -11.21082 -10.84336 -10.54792 -10.43730 -10.20495 -9.65555 -9.02535 -8.25874 -8.09810 -7.64198 -7.38584 -6.44926 -3.89940 2.34653 2.59183 3.17069 3.19572 3.20442 3.29435 3.96835 4.48225 4.80179 4.93741 5.26926 5.31071 5.52673 5.60438 5.70235 5.89017 5.96551 6.06676 6.10432 6.14270 6.24912 6.33442 6.61922 6.90507 7.07740 7.21111 7.25427 7.45259 7.68657 7.87363 8.24546 8.35062 8.62610 9.19318 9.34455 9.96909 10.55757 Molecular weight = 237.13amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.007541 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.816205 B = 3712.147595 C = 4523.962944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.399 3.601 3 N -0.681 5.681 4 C 0.616 3.384 5 N -0.599 5.599 6 C 0.110 3.890 7 C 0.113 3.887 8 N -0.672 5.672 9 C 0.542 3.458 10 N -0.381 5.381 11 C 0.131 3.869 12 C -0.291 4.291 13 H 0.110 0.890 14 C 0.028 3.972 15 N -0.872 5.872 16 Si 0.938 3.062 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.270 1.270 20 N -0.624 5.624 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 9.188 -1.911 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.120 3.880 3 N -0.424 5.424 4 C 0.251 3.749 5 N -0.320 5.320 6 C -0.033 4.033 7 C -0.031 4.031 8 N -0.416 5.416 9 C 0.184 3.816 10 N -0.074 5.074 11 C -0.012 4.012 12 C -0.421 4.421 13 H 0.127 0.873 14 C -0.178 4.178 15 N -0.509 5.509 16 Si 0.764 3.236 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.195 1.195 20 N -0.360 5.360 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.192 8.786 -1.813 9.050 hybrid contribution -0.085 -0.792 0.005 0.797 sum -1.277 7.994 -1.807 8.294 Atomic orbital electron populations 1.20370 0.86979 1.03029 1.02799 1.22662 0.96777 0.82958 0.85583 1.68160 1.07154 1.31307 1.35763 1.18777 0.85374 0.85455 0.85295 1.45515 1.05217 1.02003 1.79284 1.21455 0.78510 1.02471 1.00899 1.21426 0.97388 0.83446 1.00825 1.67792 1.40471 0.97049 1.36303 1.18964 0.84907 0.85548 0.92187 1.42293 1.05233 1.00682 1.59203 1.21456 0.78467 0.99176 1.02127 1.19875 0.99824 0.82668 1.39714 0.87278 1.25505 0.96582 1.00501 0.95171 1.70092 1.16667 1.29808 1.34319 0.85804 0.79016 0.79898 0.78892 1.19689 1.20807 1.19476 1.68313 1.08236 1.29947 1.29483 0.90529 0.90189 0.90587 0.93878 0.92323 0.90197 0.93947 0.92368 0.90340 0.92127 0.91644 0.93748 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.37 36.00 0.37 -0.80 16 2 C 0.40 8.79 7.69 -156.58 -1.20 7.58 16 3 N -0.68 -14.82 9.18 -11.52 -0.11 -14.93 16 4 C 0.62 13.64 8.19 -322.13 -2.64 11.00 16 5 N -0.60 -10.57 3.36 -191.75 -0.64 -11.22 16 6 C 0.11 1.62 10.45 59.85 0.63 2.25 16 7 C 0.11 1.53 10.45 59.84 0.63 2.16 16 8 N -0.67 -16.43 7.95 -14.71 -0.12 -16.55 16 9 C 0.54 14.35 8.15 -321.87 -2.62 11.73 16 10 N -0.38 -10.28 3.10 -124.26 -0.39 -10.66 16 11 C 0.13 3.22 8.74 59.85 0.52 3.75 16 12 C -0.29 -7.95 9.31 -15.01 -0.14 -8.09 16 13 H 0.11 3.01 7.35 -52.48 -0.39 2.63 16 14 C 0.03 0.72 5.13 -17.45 -0.09 0.63 16 15 N -0.87 -23.12 10.57 55.49 0.59 -22.54 16 16 Si 0.94 20.19 29.57 -169.99 -5.03 15.17 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 N -0.62 -15.85 9.30 -11.47 -0.11 -15.96 16 21 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 26 H 0.08 1.34 7.37 -51.93 -0.38 0.96 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 29 H 0.08 1.14 7.37 -51.92 -0.38 0.76 16 30 H 0.06 1.55 7.43 -51.93 -0.39 1.17 16 31 H 0.06 1.61 7.17 -51.93 -0.37 1.24 16 32 H 0.04 1.01 7.24 -51.93 -0.38 0.64 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 281.94 15.07 4.25 4.25 Total: -1.00 -31.36 281.94 -10.47 -41.83 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.37 Total: 0.40 kcal Atomic # 6 Polarization: 34.75 SS G_CDS: -4.55 Total: 30.21 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -0.77 Total: -91.85 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.36 -10.47 -41.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.794 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds