Wall clock time and date at job start Mon Mar 30 2020 17:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34305 * 125.78962 * 2 1 4 4 C 1.34311 * 109.47478 * 180.02562 * 3 2 1 5 5 C 1.34517 * 108.41913 * 0.24221 * 4 3 2 6 6 C 1.34512 * 125.79146 * 180.02562 * 2 1 3 7 7 C 1.50706 * 126.57530 * 359.95953 * 6 2 1 8 8 N 1.46897 * 109.47198 * 80.00008 * 7 6 2 9 9 C 1.46901 * 111.00402 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46840 * 325.00054 * 9 8 7 11 11 C 1.52998 * 109.46654 * 84.99929 * 9 8 7 12 12 C 1.53001 * 109.47398 * 205.00111 * 9 8 7 13 13 C 1.53000 * 109.47052 * 65.00133 * 12 9 8 14 14 C 1.50695 * 109.46938 * 179.97438 * 13 12 9 15 15 H 1.08003 * 120.00399 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99899 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99756 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00028 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47525 * 89.99550 * 18 16 14 20 20 H 1.48503 * 109.46871 * 210.00024 * 18 16 14 21 21 H 1.48503 * 109.47141 * 329.99683 * 18 16 14 22 22 H 1.08997 * 109.46513 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47036 * 119.97757 * 1 2 3 24 24 H 1.08997 * 109.47466 * 239.98171 * 1 2 3 25 25 H 1.08002 * 125.78603 * 179.97438 * 4 3 2 26 26 H 1.07998 * 126.57540 * 179.76364 * 5 4 3 27 27 H 1.08999 * 109.46856 * 199.99716 * 7 6 2 28 28 H 1.09001 * 109.47471 * 319.99816 * 7 6 2 29 29 H 1.00898 * 111.00107 * 303.95666 * 8 7 6 30 30 H 1.09001 * 109.47395 * 60.00465 * 11 9 8 31 31 H 1.09005 * 109.46790 * 180.02562 * 11 9 8 32 32 H 1.08996 * 109.47496 * 299.99771 * 11 9 8 33 33 H 1.08995 * 109.46954 * 184.99860 * 12 9 8 34 34 H 1.08998 * 109.46703 * 305.00282 * 12 9 8 35 35 H 1.09004 * 109.47161 * 300.00276 * 13 12 9 36 36 H 1.08997 * 109.47220 * 59.99516 * 13 12 9 37 37 H 0.97004 * 119.99799 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5815 0.7121 -0.0006 5 6 3.6309 -0.6321 -0.0063 6 6 2.2937 -1.0911 -0.0005 7 6 1.8372 -2.5273 -0.0003 8 7 1.4589 -2.9211 -1.3640 9 6 1.0081 -4.3187 -1.4026 10 1 1.5829 -4.9057 -0.6862 11 6 -0.4772 -4.3855 -1.0416 12 6 1.2171 -4.8835 -2.8091 13 6 2.7140 -4.9323 -3.1218 14 6 2.9199 -5.4891 -4.5069 15 1 2.0683 -5.7788 -5.1046 16 6 4.1955 -5.6277 -5.0115 17 7 4.3752 -6.1141 -6.2201 18 14 5.6685 -5.1260 -3.9781 19 1 6.1278 -6.2870 -3.1742 20 1 6.7676 -4.6748 -4.8690 21 1 5.2811 -4.0172 -3.0695 22 1 -0.3632 1.0277 0.0005 23 1 -0.3633 -0.5134 -0.8901 24 1 -0.3634 -0.5141 0.8898 25 1 4.4337 1.3756 -0.0011 26 1 4.5212 -1.2434 -0.0118 27 1 2.6477 -3.1661 0.3507 28 1 0.9772 -2.6352 0.6608 29 1 0.7537 -2.3030 -1.7364 30 1 -1.0520 -3.7985 -1.7580 31 1 -0.8116 -5.4226 -1.0698 32 1 -0.6261 -3.9833 -0.0396 33 1 0.8020 -5.8898 -2.8619 34 1 0.7148 -4.2445 -3.5354 35 1 3.1293 -3.9258 -3.0689 36 1 3.2163 -5.5710 -2.3953 37 1 5.2727 -6.2120 -6.5751 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:25 Heat of formation + Delta-G solvation = -3.729947 kcal Electronic energy + Delta-G solvation = -16754.510295 eV Core-core repulsion = 14111.864683 eV Total energy + Delta-G solvation = -2642.645611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.53261 -37.44213 -34.26900 -32.79191 -31.88857 -30.96360 -29.30268 -26.83353 -25.37028 -24.33145 -21.44715 -21.01179 -19.96477 -19.44915 -17.01051 -16.50122 -16.19535 -15.19365 -14.79348 -14.63916 -14.09709 -13.72226 -13.18161 -13.11948 -12.80721 -12.67187 -12.66618 -12.41572 -12.28423 -12.14114 -11.51986 -11.34638 -11.22792 -10.82047 -10.48455 -9.78343 -9.68899 -9.55696 -9.43621 -8.97257 -8.40126 -8.34125 -7.94337 -5.91419 -3.87044 1.75054 2.63439 3.03460 3.40821 3.47642 3.57036 4.58811 4.59761 4.70541 4.92656 4.98479 5.14424 5.25039 5.31883 5.44405 5.44756 5.50590 5.56384 5.61901 5.74659 5.87112 6.00379 6.11143 6.19982 6.26053 6.31935 6.56216 6.59106 6.75133 7.14351 7.17454 7.37870 7.56144 7.71904 7.80311 7.98156 8.69258 9.14985 9.73152 11.22535 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.006516 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.680706 B = 4296.339814 C = 5195.089818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.017 4.017 3 O -0.179 6.179 4 C -0.053 4.053 5 C -0.189 4.189 6 C -0.165 4.165 7 C 0.129 3.871 8 N -0.669 5.669 9 C 0.080 3.920 10 H 0.072 0.928 11 C -0.180 4.180 12 C -0.089 4.089 13 C -0.007 4.007 14 C -0.516 4.516 15 H 0.068 0.932 16 C 0.063 3.937 17 N -0.910 5.910 18 Si 0.879 3.121 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.261 1.261 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.200 0.800 26 H 0.147 0.853 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.335 0.665 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.032 0.968 36 H 0.002 0.998 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 12.051 15.907 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 O -0.076 6.076 4 C -0.120 4.120 5 C -0.209 4.209 6 C -0.167 4.167 7 C 0.000 4.000 8 N -0.300 5.300 9 C -0.029 4.029 10 H 0.090 0.910 11 C -0.239 4.239 12 C -0.127 4.127 13 C -0.044 4.044 14 C -0.554 4.554 15 H 0.086 0.914 16 C -0.137 4.137 17 N -0.550 5.550 18 Si 0.706 3.294 19 H -0.207 1.207 20 H -0.217 1.217 21 H -0.185 1.185 22 H 0.093 0.907 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.217 0.783 26 H 0.165 0.835 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.020 0.980 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.378 12.137 15.594 20.764 hybrid contribution 0.311 0.095 0.754 0.821 sum -6.067 12.232 16.348 21.300 Atomic orbital electron populations 1.20264 0.85499 1.03709 1.03356 1.22184 0.93751 0.84020 1.06867 1.83981 1.16913 1.34789 1.71917 1.23896 0.84139 0.96025 1.07896 1.21744 0.97935 0.94609 1.06594 1.20146 0.93027 0.95595 1.07930 1.20235 0.98992 0.90298 0.90447 1.60560 1.46501 1.03298 1.19619 1.21800 0.92356 0.88859 0.99929 0.90962 1.22525 0.98656 1.02399 1.00360 1.21446 1.00059 0.98665 0.92574 1.19475 0.91716 0.97231 0.96002 1.21272 0.93660 1.41200 0.99235 0.91428 1.25024 0.98990 0.94836 0.94809 1.69934 1.21913 1.46774 1.16410 0.86775 0.82395 0.79612 0.80577 1.20664 1.21737 1.18488 0.90704 0.89835 0.90053 0.78286 0.83483 0.90357 0.95012 0.84642 0.92644 0.92061 0.93665 0.92884 0.92893 0.94987 0.98001 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.12 36.01 0.36 -0.28 16 2 C -0.02 -0.22 7.32 -35.62 -0.26 -0.48 16 3 O -0.18 -2.36 10.65 5.68 0.06 -2.29 16 4 C -0.05 -0.63 12.09 29.42 0.36 -0.27 16 5 C -0.19 -2.59 10.87 -39.70 -0.43 -3.03 16 6 C -0.17 -2.30 5.68 -104.74 -0.59 -2.89 16 7 C 0.13 1.77 5.70 -4.97 -0.03 1.74 16 8 N -0.67 -10.46 5.69 -107.99 -0.61 -11.08 16 9 C 0.08 1.27 2.59 -67.71 -0.18 1.09 16 10 H 0.07 1.17 7.80 -51.93 -0.40 0.76 16 11 C -0.18 -2.26 9.16 37.16 0.34 -1.92 16 12 C -0.09 -1.80 4.83 -26.73 -0.13 -1.93 16 13 C -0.01 -0.17 3.93 -27.89 -0.11 -0.28 16 14 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 16 15 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -29.14 13.96 55.43 0.77 -28.37 16 18 Si 0.88 22.83 27.47 -169.99 -4.67 18.16 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.71 7.66 -51.93 -0.40 0.31 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 27 H 0.08 1.12 8.05 -51.93 -0.42 0.71 16 28 H 0.03 0.38 7.43 -51.93 -0.39 -0.01 16 29 H 0.34 4.81 7.99 -39.29 -0.31 4.50 16 30 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.49 7.45 -51.93 -0.39 0.11 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 36 H 0.00 0.04 7.57 -51.93 -0.39 -0.35 16 37 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -33.53 307.94 -6.93 -40.46 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.02 Total: 0.54 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.10 Total: -22.06 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.16 Total: -39.44 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: 0.06 Total: -2.29 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.67 Total: 18.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.53 -6.93 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.732 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds