Wall clock time and date at job start Mon Mar 30 2020 17:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99743 * 2 1 4 4 H 1.48499 * 109.47561 * 270.00396 * 3 2 1 5 5 H 1.48497 * 109.47140 * 30.00420 * 3 2 1 6 6 H 1.48502 * 109.47157 * 150.00425 * 3 2 1 7 7 C 1.38808 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00486 * 359.97438 * 7 2 1 9 9 N 1.36944 * 120.00050 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99905 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.47401 * 324.99575 * 10 9 7 12 12 C 1.52998 * 109.47438 * 85.00028 * 10 9 7 13 13 C 1.52992 * 109.47451 * 59.99655 * 12 10 9 14 14 C 1.53006 * 109.47056 * 59.99986 * 13 12 10 15 15 C 1.52998 * 109.47002 * 300.00289 * 14 13 12 16 16 H 1.08995 * 109.47040 * 299.99717 * 15 14 13 17 17 N 1.46506 * 109.46656 * 179.97438 * 15 14 13 18 18 N 1.28879 * 125.44858 * 120.00442 * 17 15 14 19 19 C 1.31037 * 107.91890 * 180.02562 * 18 17 15 20 20 N 1.33316 * 106.90111 * 359.97438 * 19 18 17 21 21 N 1.28776 * 125.44804 * 299.69016 * 17 15 14 22 22 C 1.52997 * 109.47206 * 60.00187 * 15 14 13 23 23 H 0.96991 * 120.00291 * 359.97438 * 1 2 3 24 24 H 0.96997 * 119.99695 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.47120 * 180.02562 * 12 10 9 26 26 H 1.09002 * 109.47051 * 299.99339 * 12 10 9 27 27 H 1.08996 * 109.47595 * 180.02562 * 13 12 10 28 28 H 1.09005 * 109.47280 * 300.00296 * 13 12 10 29 29 H 1.09002 * 109.47088 * 179.97438 * 14 13 12 30 30 H 1.09005 * 109.46823 * 60.00030 * 14 13 12 31 31 H 1.08001 * 126.55212 * 179.97438 * 19 18 17 32 32 H 1.08995 * 109.47505 * 59.99814 * 22 15 14 33 33 H 1.09001 * 109.47000 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1375 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5651 -3.2062 0.5888 12 6 4.2578 -2.9756 -1.4380 13 6 5.0257 -1.9434 -2.2660 14 6 6.4132 -1.7311 -1.6569 15 6 6.2676 -1.2262 -0.2200 16 1 5.7226 -0.2823 -0.2201 17 7 7.5961 -1.0235 0.3633 18 7 8.0541 0.0958 0.8087 19 6 9.2701 -0.1132 1.2501 20 7 9.5359 -1.4052 1.0568 21 7 8.4910 -1.9365 0.5182 22 6 5.4997 -2.2585 0.6080 23 1 -0.4850 0.8399 0.0004 24 1 3.8646 -0.3620 -0.0014 25 1 4.8025 -3.9198 -1.4379 26 1 3.2694 -3.1269 -1.8718 27 1 5.1291 -2.3029 -3.2897 28 1 4.4807 -0.9994 -2.2660 29 1 6.9605 -0.9960 -2.2471 30 1 6.9582 -2.6751 -1.6569 31 1 9.9308 0.6210 1.6870 32 1 6.0447 -3.2024 0.6080 33 1 5.3956 -1.8986 1.6315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173729997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:38 Heat of formation + Delta-G solvation = 113.920538 kcal Electronic energy + Delta-G solvation = -17253.256758 eV Core-core repulsion = 14544.465263 eV Total energy + Delta-G solvation = -2708.791496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.128 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.35160 -40.25867 -36.33974 -34.97262 -34.03745 -33.11541 -31.24737 -30.38349 -25.82344 -25.40349 -24.81347 -23.50556 -22.74073 -20.17167 -19.91036 -18.63623 -18.04950 -16.68603 -16.56808 -16.29037 -15.83365 -15.31505 -14.85692 -14.70196 -14.30395 -13.97686 -13.78379 -13.32298 -13.19186 -12.96175 -12.63794 -12.42406 -12.23047 -12.11287 -12.00378 -11.84296 -11.75457 -11.54203 -11.40245 -11.17126 -10.83419 -9.32046 -8.01071 -5.33995 0.21823 0.89604 1.26316 1.35596 1.37579 1.44386 2.47061 3.07114 3.30264 3.39725 3.45320 3.54655 3.77081 3.81213 4.04848 4.13490 4.24857 4.41365 4.51160 4.62460 4.69205 4.81733 4.89583 4.91810 4.97763 5.18163 5.21847 5.26684 5.47653 5.52568 5.81456 6.22414 7.08322 7.36660 7.83400 8.00178 9.20448 Molecular weight = 237.13amu Principal moments of inertia in cm(-1) A = 0.029505 B = 0.007878 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.755763 B = 3553.510540 C = 4073.556549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.060 4.060 3 Si 0.939 3.061 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.257 1.257 7 C -0.220 4.220 8 H 0.064 0.936 9 N -0.749 5.749 10 C 0.181 3.819 11 H 0.061 0.939 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.112 4.112 15 C 0.156 3.844 16 H 0.106 0.894 17 N -0.127 5.127 18 N -0.337 5.337 19 C 0.145 3.855 20 N -0.314 5.314 21 N -0.069 5.069 22 C -0.121 4.121 23 H 0.256 0.744 24 H 0.361 0.639 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.275 0.725 32 H 0.105 0.895 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.839 -2.509 -1.831 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.251 4.251 3 Si 0.767 3.233 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.182 1.182 7 C -0.351 4.351 8 H 0.082 0.918 9 N -0.393 5.393 10 C 0.072 3.928 11 H 0.079 0.921 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.151 4.151 15 C 0.057 3.943 16 H 0.124 0.876 17 N -0.041 5.041 18 N -0.187 5.187 19 C -0.157 4.157 20 N -0.184 5.184 21 N -0.062 5.062 22 C -0.160 4.160 23 H 0.065 0.935 24 H 0.195 0.805 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.290 0.710 32 H 0.124 0.876 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.431 -3.172 -2.032 17.834 hybrid contribution -0.045 1.885 0.403 1.928 sum 17.386 -1.287 -1.629 17.510 Atomic orbital electron populations 1.69855 1.06992 1.26404 1.60126 1.25363 0.95887 1.00676 1.03222 0.85652 0.78651 0.80772 0.78201 1.20160 1.22683 1.18165 1.19015 0.82430 0.93405 1.40218 0.91806 1.42868 1.02540 1.03616 1.90290 1.20387 0.89180 0.87769 0.95427 0.92051 1.22091 1.00259 0.98832 0.96105 1.21351 0.92996 1.00094 0.99772 1.21888 0.99606 1.03059 0.90561 1.22145 0.74173 1.02665 0.95360 0.87563 1.50685 1.14959 1.02180 1.36245 1.74788 1.14449 1.12107 1.17345 1.28193 0.92013 0.94706 1.00806 1.75861 1.17719 1.08744 1.16120 1.78861 0.94401 1.18571 1.14394 1.22146 0.96123 0.99335 0.98437 0.93507 0.80478 0.89513 0.92964 0.89221 0.92954 0.90637 0.88675 0.70975 0.87627 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.45 13.97 21.65 0.30 -61.15 16 2 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 3 Si 0.94 44.14 27.73 68.60 1.90 46.05 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 6 H -0.26 -10.99 6.52 99.48 0.65 -10.35 16 7 C -0.22 -11.69 10.41 84.03 0.87 -10.82 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 9 N -0.75 -31.50 4.08 -322.94 -1.32 -32.82 16 10 C 0.18 5.88 3.10 44.99 0.14 6.02 16 11 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 12 C -0.13 -3.68 5.61 30.59 0.17 -3.51 16 13 C -0.10 -2.59 5.77 30.59 0.18 -2.42 16 14 C -0.11 -2.52 5.40 30.60 0.17 -2.36 16 15 C 0.16 4.18 2.94 44.99 0.13 4.31 16 16 H 0.11 3.18 6.51 -2.39 -0.02 3.17 16 17 N -0.13 -3.52 3.73 -169.58 -0.63 -4.15 16 18 N -0.34 -9.25 12.13 -61.10 -0.74 -10.00 16 19 C 0.15 3.20 13.26 180.69 2.40 5.60 16 20 N -0.31 -8.37 12.50 -61.11 -0.76 -9.14 16 21 N -0.07 -1.93 12.95 37.02 0.48 -1.45 16 22 C -0.12 -3.30 5.07 30.60 0.16 -3.14 16 23 H 0.26 15.39 8.31 -92.72 -0.77 14.62 16 24 H 0.36 14.85 3.92 -92.71 -0.36 14.49 16 25 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.58 7.60 -2.38 -0.02 1.56 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.27 3.02 8.06 -2.91 -0.02 2.99 16 32 H 0.11 2.45 8.14 -2.39 -0.02 2.44 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -66.81 272.42 4.60 -62.21 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.69 Total: 19.70 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 4.68 Total: -9.25 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -2.67 Total: -118.70 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.90 Total: 46.05 kcal Total: -66.81 4.60 -62.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173729997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.130 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds