Wall clock time and date at job start Mon Mar 30 2020 17:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 119.99662 * 2 1 4 4 H 1.08003 * 120.00251 * 203.04965 * 3 2 1 5 5 C 1.38815 * 119.99999 * 23.04410 * 3 2 1 6 6 N 1.31620 * 120.00153 * 12.93074 * 5 3 2 7 7 Si 1.86809 * 119.99888 * 192.92581 * 5 3 2 8 8 H 1.48502 * 109.46940 * 60.00241 * 7 5 3 9 9 H 1.48500 * 109.46981 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47153 * 300.00143 * 7 5 3 11 11 C 1.46498 * 120.00126 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46816 * 90.00015 * 11 2 1 13 13 C 1.53002 * 109.46839 * 179.97438 * 12 11 2 14 14 C 1.50703 * 109.46937 * 180.02562 * 13 12 11 15 15 C 1.38213 * 120.01224 * 100.00456 * 14 13 12 16 16 C 1.38234 * 120.02642 * 179.97438 * 15 14 13 17 17 C 1.38269 * 120.04789 * 0.02562 * 16 15 14 18 18 C 1.38179 * 120.02568 * 0.02562 * 17 16 15 19 19 C 1.38445 * 120.01030 * 279.72247 * 14 13 12 20 20 F 1.35090 * 120.02766 * 0.02562 * 19 14 13 21 21 H 1.08996 * 109.47150 * 275.11912 * 1 2 3 22 22 H 1.08995 * 109.47355 * 35.12691 * 1 2 3 23 23 H 1.09001 * 109.46838 * 155.12496 * 1 2 3 24 24 H 0.96993 * 120.00193 * 179.97438 * 6 5 3 25 25 H 1.08995 * 109.47031 * 330.00391 * 11 2 1 26 26 H 1.09001 * 109.47248 * 209.99829 * 11 2 1 27 27 H 1.09003 * 109.47495 * 59.99986 * 12 11 2 28 28 H 1.08999 * 109.47430 * 299.99556 * 12 11 2 29 29 H 1.09006 * 109.47225 * 60.00545 * 13 12 11 30 30 H 1.09001 * 109.47489 * 299.99975 * 13 12 11 31 31 H 1.07998 * 119.99200 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.97436 * 179.97438 * 16 15 14 33 33 H 1.07993 * 119.98418 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.00815 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2234 -0.3662 5 6 1.5386 2.3401 0.4706 6 7 0.4116 2.2597 1.1458 7 14 2.3158 4.0074 0.1456 8 1 2.4195 4.2281 -1.3193 9 1 1.4741 5.0719 0.7487 10 1 3.6718 4.0476 0.7495 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 6 3.2181 -3.0356 -1.4412 14 6 3.4698 -3.4710 -2.8619 15 6 4.7038 -3.2506 -3.4441 16 6 4.9352 -3.6502 -4.7470 17 6 3.9325 -4.2703 -5.4694 18 6 2.6977 -4.4907 -4.8897 19 6 2.4669 -4.0970 -3.5823 20 9 1.2621 -4.3175 -3.0125 21 1 -0.3633 0.0917 1.0235 22 1 -0.3634 0.8405 -0.5913 23 1 -0.3633 -0.9324 -0.4323 24 1 -0.0151 3.0661 1.4750 25 1 1.6085 -2.0281 0.5147 26 1 3.1500 -1.1381 0.5143 27 1 3.0416 -0.9515 -1.9560 28 1 1.5001 -1.8416 -1.9556 29 1 2.6294 -3.7954 -0.9270 30 1 4.1706 -2.9047 -0.9276 31 1 5.4877 -2.7660 -2.8810 32 1 5.8996 -3.4772 -5.2013 33 1 4.1142 -4.5817 -6.4874 34 1 1.9145 -4.9747 -5.4544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207495478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:52 Heat of formation + Delta-G solvation = -12.112887 kcal Electronic energy + Delta-G solvation = -16277.992479 eV Core-core repulsion = 13511.523052 eV Total energy + Delta-G solvation = -2766.469428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.76980 -39.08820 -36.03444 -33.87669 -31.37526 -30.55047 -29.34639 -25.97018 -25.49094 -22.80614 -22.63793 -20.93627 -20.09678 -17.51015 -16.65536 -16.35819 -15.79128 -15.47088 -14.80118 -14.22446 -14.14979 -13.63852 -13.30636 -13.14936 -12.91264 -12.61050 -12.29542 -11.79528 -11.48774 -11.25321 -11.09795 -10.75881 -10.73349 -10.49861 -10.37255 -10.08274 -9.79517 -9.68337 -8.96672 -8.61837 -8.44115 -6.64194 -5.64551 -3.11084 1.15583 1.19318 3.42525 3.47638 3.48940 3.57138 4.31301 4.55511 4.69188 4.77262 4.90993 5.17651 5.29821 5.48482 5.53613 5.55118 5.75338 5.97179 6.01786 6.05802 6.16649 6.21652 6.33064 6.41806 6.49464 6.56895 6.85233 6.89827 6.92445 7.10019 7.46497 7.80446 7.86906 8.48292 9.31931 9.96274 10.46063 11.40170 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033273 B = 0.005291 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.333645 B = 5290.615388 C = 5735.133228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.604 5.604 3 C -0.253 4.253 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.153 3.847 12 C -0.131 4.131 13 C -0.081 4.081 14 C -0.102 4.102 15 C -0.092 4.092 16 C -0.130 4.130 17 C -0.105 4.105 18 C -0.155 4.155 19 C 0.098 3.902 20 F -0.136 7.136 21 H 0.030 0.970 22 H 0.039 0.961 23 H -0.003 1.003 24 H 0.252 0.748 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 -13.563 -10.674 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.327 5.327 3 C -0.382 4.382 4 H 0.084 0.916 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.026 3.974 12 C -0.172 4.172 13 C -0.119 4.119 14 C -0.103 4.103 15 C -0.110 4.110 16 C -0.149 4.149 17 C -0.123 4.123 18 C -0.174 4.174 19 C 0.079 3.921 20 F -0.115 7.115 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.016 0.984 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.815 -13.413 -10.545 18.372 hybrid contribution 0.093 0.947 -0.195 0.972 sum 6.908 -12.465 -10.740 17.845 Atomic orbital electron populations 1.20771 0.82773 0.95309 0.99323 1.43889 1.01835 1.00762 1.86199 1.19141 0.98191 0.85751 1.35153 0.91603 1.25020 0.97951 0.98462 0.98354 1.70062 1.19494 1.27171 1.38731 0.86351 0.78433 0.83969 0.77884 1.21169 1.21644 1.20964 1.20722 0.95932 0.88268 0.92493 1.22266 0.99233 0.93885 1.01778 1.20631 1.01754 0.98938 0.90588 1.20184 0.93304 0.98636 0.98131 1.21015 0.96067 0.98768 0.95165 1.21186 0.99530 0.99497 0.94641 1.20932 0.92467 0.98981 0.99912 1.21123 0.98979 1.03437 0.93859 1.17614 0.81383 1.00950 0.92196 1.91497 1.42415 1.92672 1.84887 0.95171 0.94273 0.98422 0.93792 0.94741 0.93611 0.92096 0.92753 0.91013 0.90693 0.85040 0.85602 0.85435 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.25 8.98 59.85 0.54 4.78 16 2 N -0.60 -15.96 2.92 -181.12 -0.53 -16.49 16 3 C -0.25 -7.18 9.65 -15.06 -0.15 -7.33 16 4 H 0.07 1.82 7.86 -52.48 -0.41 1.40 16 5 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 6 N -0.91 -27.38 10.71 55.49 0.59 -26.78 16 7 Si 0.90 22.36 29.57 -169.99 -5.03 17.33 16 8 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 C 0.15 3.28 5.64 -4.04 -0.02 3.26 16 12 C -0.13 -2.43 5.52 -26.73 -0.15 -2.58 16 13 C -0.08 -1.20 5.07 -27.88 -0.14 -1.34 16 14 C -0.10 -1.41 5.14 -104.55 -0.54 -1.95 16 15 C -0.09 -1.09 9.67 -39.59 -0.38 -1.47 16 16 C -0.13 -1.33 10.05 -39.57 -0.40 -1.72 16 17 C -0.10 -1.05 10.04 -39.59 -0.40 -1.44 16 18 C -0.16 -1.80 10.03 -39.51 -0.40 -2.20 16 19 C 0.10 1.38 7.24 -39.42 -0.29 1.10 16 20 F -0.14 -2.12 16.66 2.25 0.04 -2.09 16 21 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 22 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 23 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 24 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 26 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 30 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 31 H 0.13 1.35 8.04 -52.49 -0.42 0.93 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -31.29 292.76 -7.85 -39.13 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -4.93 Total: -4.53 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -2.41 Total: -10.99 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.07 Total: -43.27 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.29 -7.85 -39.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207495478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.020 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds