Wall clock time and date at job start Mon Mar 30 2020 17:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 119.99662 * 2 1 4 4 H 1.08003 * 120.00251 * 203.04965 * 3 2 1 5 5 C 1.38815 * 119.99999 * 23.04410 * 3 2 1 6 6 N 1.31620 * 120.00153 * 12.93074 * 5 3 2 7 7 Si 1.86809 * 119.99888 * 192.92581 * 5 3 2 8 8 H 1.48502 * 109.46940 * 60.00241 * 7 5 3 9 9 H 1.48500 * 109.46981 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47153 * 300.00143 * 7 5 3 11 11 C 1.46498 * 120.00126 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46816 * 90.00015 * 11 2 1 13 13 C 1.53002 * 109.46839 * 179.97438 * 12 11 2 14 14 C 1.50703 * 109.46937 * 180.02562 * 13 12 11 15 15 C 1.38213 * 120.01224 * 100.00456 * 14 13 12 16 16 C 1.38234 * 120.02642 * 179.97438 * 15 14 13 17 17 C 1.38269 * 120.04789 * 0.02562 * 16 15 14 18 18 C 1.38179 * 120.02568 * 0.02562 * 17 16 15 19 19 C 1.38445 * 120.01030 * 279.72247 * 14 13 12 20 20 F 1.35090 * 120.02766 * 0.02562 * 19 14 13 21 21 H 1.08996 * 109.47150 * 275.11912 * 1 2 3 22 22 H 1.08995 * 109.47355 * 35.12691 * 1 2 3 23 23 H 1.09001 * 109.46838 * 155.12496 * 1 2 3 24 24 H 0.96993 * 120.00193 * 179.97438 * 6 5 3 25 25 H 1.08995 * 109.47031 * 330.00391 * 11 2 1 26 26 H 1.09001 * 109.47248 * 209.99829 * 11 2 1 27 27 H 1.09003 * 109.47495 * 59.99986 * 12 11 2 28 28 H 1.08999 * 109.47430 * 299.99556 * 12 11 2 29 29 H 1.09006 * 109.47225 * 60.00545 * 13 12 11 30 30 H 1.09001 * 109.47489 * 299.99975 * 13 12 11 31 31 H 1.07998 * 119.99200 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.97436 * 179.97438 * 16 15 14 33 33 H 1.07993 * 119.98418 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.00815 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2234 -0.3662 5 6 1.5386 2.3401 0.4706 6 7 0.4116 2.2597 1.1458 7 14 2.3158 4.0074 0.1456 8 1 2.4195 4.2281 -1.3193 9 1 1.4741 5.0719 0.7487 10 1 3.6718 4.0476 0.7495 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 6 3.2181 -3.0356 -1.4412 14 6 3.4698 -3.4710 -2.8619 15 6 4.7038 -3.2506 -3.4441 16 6 4.9352 -3.6502 -4.7470 17 6 3.9325 -4.2703 -5.4694 18 6 2.6977 -4.4907 -4.8897 19 6 2.4669 -4.0970 -3.5823 20 9 1.2621 -4.3175 -3.0125 21 1 -0.3633 0.0917 1.0235 22 1 -0.3634 0.8405 -0.5913 23 1 -0.3633 -0.9324 -0.4323 24 1 -0.0151 3.0661 1.4750 25 1 1.6085 -2.0281 0.5147 26 1 3.1500 -1.1381 0.5143 27 1 3.0416 -0.9515 -1.9560 28 1 1.5001 -1.8416 -1.9556 29 1 2.6294 -3.7954 -0.9270 30 1 4.1706 -2.9047 -0.9276 31 1 5.4877 -2.7660 -2.8810 32 1 5.8996 -3.4772 -5.2013 33 1 4.1142 -4.5817 -6.4874 34 1 1.9145 -4.9747 -5.4544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207495478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:51 Heat of formation + Delta-G solvation = -28.581250 kcal Electronic energy + Delta-G solvation = -16278.706601 eV Core-core repulsion = 13511.523052 eV Total energy + Delta-G solvation = -2767.183550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85308 -40.00101 -37.86901 -35.35056 -33.19063 -31.48677 -30.78098 -27.98044 -27.12927 -24.26191 -23.65415 -22.26786 -21.71709 -18.73460 -18.45655 -17.40266 -17.02149 -16.62809 -16.47173 -15.80594 -15.42089 -15.05661 -14.80992 -14.68803 -14.12873 -14.01779 -13.63494 -13.18784 -12.89270 -12.76665 -12.69151 -12.47387 -12.37217 -12.22565 -12.05141 -11.85746 -11.72029 -11.39643 -10.63466 -9.85964 -9.55185 -8.75976 -7.82000 -5.32062 0.24716 0.31610 1.45687 1.49000 1.55614 2.51181 2.69291 3.30402 3.38866 3.64591 3.80768 3.84419 4.09043 4.22981 4.41856 4.45307 4.49988 4.63795 4.71374 4.80210 4.87247 4.99789 5.06128 5.17364 5.20463 5.25802 5.34083 5.49361 5.53018 5.55225 5.61735 5.66344 6.02391 6.33179 7.14826 7.87206 8.32653 9.21333 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033273 B = 0.005291 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.333645 B = 5290.615388 C = 5735.133228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.624 5.624 3 C -0.264 4.264 4 H 0.071 0.929 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.971 3.029 8 H -0.280 1.280 9 H -0.293 1.293 10 H -0.272 1.272 11 C 0.150 3.850 12 C -0.112 4.112 13 C -0.071 4.071 14 C -0.125 4.125 15 C -0.099 4.099 16 C -0.126 4.126 17 C -0.098 4.098 18 C -0.161 4.161 19 C 0.066 3.934 20 F -0.154 7.154 21 H 0.006 0.994 22 H 0.013 0.987 23 H 0.024 0.976 24 H 0.248 0.752 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.080 -14.154 -12.410 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.347 5.347 3 C -0.394 4.394 4 H 0.089 0.911 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.799 3.201 8 H -0.206 1.206 9 H -0.220 1.220 10 H -0.197 1.197 11 C 0.024 3.976 12 C -0.152 4.152 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.117 4.117 16 C -0.144 4.144 17 C -0.115 4.115 18 C -0.179 4.179 19 C 0.047 3.953 20 F -0.133 7.133 21 H 0.024 0.976 22 H 0.032 0.968 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.923 -14.042 -12.295 20.687 hybrid contribution -0.507 1.039 0.279 1.189 sum 8.416 -13.003 -12.016 19.603 Atomic orbital electron populations 1.20505 0.83187 0.95516 0.97557 1.44180 1.02035 1.02025 1.86463 1.19505 0.98535 0.86825 1.34553 0.91088 1.25857 0.98683 1.02095 0.98480 1.70237 1.20973 1.27716 1.39973 0.85279 0.77822 0.79209 0.77780 1.20571 1.21961 1.19718 1.20917 0.95655 0.86560 0.94463 1.21937 0.98686 0.95657 0.98936 1.20472 1.01833 0.96539 0.92087 1.20179 0.94487 1.00232 0.97651 1.21286 0.95537 0.98701 0.96209 1.21609 1.00904 0.98009 0.93844 1.21392 0.91402 0.97464 1.01287 1.21426 1.00364 1.03167 0.92984 1.18016 0.81061 1.02676 0.93543 1.91443 1.43480 1.93024 1.85338 0.97555 0.96824 0.95720 0.94281 0.93793 0.93225 0.93455 0.94563 0.91122 0.89039 0.83660 0.82431 0.82006 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.46 8.98 127.77 1.15 10.60 16 2 N -0.62 -33.26 2.92 -726.94 -2.12 -35.38 16 3 C -0.26 -15.07 9.65 84.03 0.81 -14.26 16 4 H 0.07 3.89 7.86 -2.91 -0.02 3.87 16 5 C -0.06 -3.28 5.10 84.86 0.43 -2.84 16 6 N -0.94 -57.85 10.71 21.65 0.23 -57.62 16 7 Si 0.97 46.10 29.57 68.60 2.03 48.12 16 8 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 C 0.15 6.38 5.64 86.38 0.49 6.87 16 12 C -0.11 -4.14 5.52 30.60 0.17 -3.97 16 13 C -0.07 -2.05 5.07 29.85 0.15 -1.90 16 14 C -0.12 -3.33 5.14 -19.82 -0.10 -3.43 16 15 C -0.10 -2.12 9.67 22.26 0.22 -1.90 16 16 C -0.13 -2.10 10.05 22.28 0.22 -1.88 16 17 C -0.10 -1.60 10.04 22.26 0.22 -1.38 16 18 C -0.16 -3.42 10.03 22.31 0.22 -3.20 16 19 C 0.07 1.82 7.24 22.38 0.16 1.99 16 20 F -0.15 -4.87 16.66 44.97 0.75 -4.12 16 21 H 0.01 0.36 7.34 -2.39 -0.02 0.34 16 22 H 0.01 0.75 7.34 -2.39 -0.02 0.73 16 23 H 0.02 1.14 8.03 -2.39 -0.02 1.12 16 24 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 25 H 0.04 1.77 8.07 -2.39 -0.02 1.75 16 26 H 0.05 2.06 8.04 -2.39 -0.02 2.04 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 2.02 7.94 -2.38 -0.02 2.00 16 30 H 0.09 2.28 8.00 -2.39 -0.02 2.26 16 31 H 0.15 2.59 8.04 -2.91 -0.02 2.57 16 32 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -67.87 292.76 6.10 -61.78 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.06 Total: 2.52 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 4.15 Total: -15.30 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -1.89 Total: -93.00 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.75 Total: -4.12 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -67.87 6.10 -61.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207495478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.197 kcal (2) G-P(sol) polarization free energy of solvation -67.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds