Wall clock time and date at job start Mon Mar 30 2020 17:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 110.99672 * 2 1 4 4 C 1.46897 * 110.99804 * 123.95706 * 2 1 3 5 5 C 1.50705 * 109.46831 * 170.00090 * 4 2 1 6 6 C 1.38214 * 120.01059 * 259.99669 * 5 4 2 7 7 C 1.38225 * 120.02588 * 179.97438 * 6 5 4 8 8 C 1.38270 * 120.04716 * 0.02562 * 7 6 5 9 9 C 1.38172 * 120.02638 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.01056 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47114 * 264.97766 * 10 9 8 12 12 H 1.08000 * 119.99964 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99981 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99727 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00010 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47046 * 89.99876 * 15 13 11 17 17 H 1.48498 * 109.46975 * 210.00323 * 15 13 11 18 18 H 1.48502 * 109.46845 * 329.99725 * 15 13 11 19 19 C 1.38440 * 120.01080 * 79.97484 * 5 4 2 20 20 F 1.35101 * 120.02694 * 0.02562 * 19 5 4 21 21 H 1.09001 * 109.47327 * 296.04320 * 1 2 3 22 22 H 1.08995 * 109.47187 * 56.04928 * 1 2 3 23 23 H 1.09001 * 109.46980 * 176.04564 * 1 2 3 24 24 H 1.09006 * 109.47044 * 183.95354 * 3 2 1 25 25 H 1.09001 * 109.47798 * 303.95167 * 3 2 1 26 26 H 1.09000 * 109.47342 * 63.95719 * 3 2 1 27 27 H 1.08995 * 109.47473 * 50.00288 * 4 2 1 28 28 H 1.09002 * 109.47033 * 289.99646 * 4 2 1 29 29 H 1.07999 * 119.99303 * 0.02562 * 6 5 4 30 30 H 1.07993 * 119.97787 * 179.72447 * 7 6 5 31 31 H 1.08003 * 119.98296 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.46941 * 24.97855 * 10 9 8 33 33 H 1.08999 * 109.47203 * 144.97980 * 10 9 8 34 34 H 0.97006 * 119.99781 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4818 -0.9525 0.9728 6 6 3.9791 -2.1477 0.4885 7 6 5.3423 -2.3189 0.3367 8 6 6.2099 -1.2951 0.6697 9 6 5.7150 -0.0994 1.1540 10 6 6.6610 1.0164 1.5163 11 6 6.9640 0.9591 2.9914 12 1 6.5167 0.1912 3.6051 13 6 7.8123 1.8870 3.5575 14 7 8.0771 1.8366 4.8447 15 14 8.5854 3.2156 2.4961 16 1 7.7000 4.4075 2.4720 17 1 9.9071 3.5920 3.0588 18 1 8.7638 2.7033 1.1137 19 6 4.3495 0.0734 1.3061 20 9 3.8645 1.2421 1.7796 21 1 -0.3634 0.4512 0.9233 22 1 -0.3633 0.5739 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0828 1.3433 -0.0709 25 1 1.5898 1.9164 -0.8524 26 1 1.7044 1.8723 0.9233 27 1 1.5090 -1.7407 1.1755 28 1 1.7975 -0.2248 2.0628 29 1 3.3023 -2.9479 0.2277 30 1 5.7302 -3.2547 -0.0376 31 1 7.2749 -1.4301 0.5511 32 1 7.5863 0.9063 0.9507 33 1 6.2008 1.9751 1.2769 34 1 8.6742 2.4892 5.2429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:10 Heat of formation + Delta-G solvation = -18.271507 kcal Electronic energy + Delta-G solvation = -16882.200768 eV Core-core repulsion = 14115.464283 eV Total energy + Delta-G solvation = -2766.736486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.28388 -38.87521 -36.97745 -33.55219 -31.78537 -30.62712 -27.80613 -27.40212 -26.50651 -23.17318 -22.45940 -21.00455 -19.87275 -16.92794 -16.84840 -16.13582 -15.88945 -15.32810 -14.78962 -14.39890 -14.25958 -14.11263 -13.27352 -12.74081 -12.70008 -12.37355 -12.29956 -12.04836 -11.94587 -11.72975 -11.46366 -11.28591 -11.07339 -10.83507 -10.47550 -10.09416 -9.96622 -9.41543 -8.59409 -8.45730 -8.11804 -7.88296 -6.08688 -4.08014 1.66341 1.83651 3.28607 3.35704 3.38011 3.93892 4.33979 4.40525 4.83593 4.92856 5.12286 5.21615 5.26112 5.38945 5.46649 5.52302 5.56591 5.72470 5.75574 5.78204 5.82785 6.01549 6.18106 6.38578 6.50169 6.72828 6.81021 6.89389 6.95538 7.00683 7.06750 7.34131 7.47556 7.66552 8.46172 8.94909 9.51112 11.04286 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029949 B = 0.007287 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.703045 B = 3841.606860 C = 4317.772575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.016 3.984 4 C 0.098 3.902 5 C -0.119 4.119 6 C -0.101 4.101 7 C -0.133 4.133 8 C -0.097 4.097 9 C -0.064 4.064 10 C 0.016 3.984 11 C -0.512 4.512 12 H 0.073 0.927 13 C 0.071 3.929 14 N -0.899 5.899 15 Si 0.877 3.123 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.102 3.898 20 F -0.134 7.134 21 H 0.024 0.976 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.032 0.968 33 H 0.026 0.974 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -5.371 -10.333 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.132 4.132 4 C -0.029 4.029 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.151 4.151 8 C -0.115 4.115 9 C -0.065 4.065 10 C -0.021 4.021 11 C -0.550 4.550 12 H 0.091 0.909 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.704 3.296 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.189 1.189 19 C 0.082 3.918 20 F -0.113 7.113 21 H 0.043 0.957 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.893 -5.454 -10.592 16.143 hybrid contribution 0.120 1.346 0.518 1.448 sum -10.774 -4.108 -10.074 15.311 Atomic orbital electron populations 1.22378 0.87601 1.01963 1.00432 1.62076 1.07316 1.14462 1.42693 1.22695 1.02150 0.88142 1.00202 1.20922 0.91242 0.98707 0.91996 1.19597 0.94432 0.94351 1.03677 1.20619 0.95257 0.96115 0.99952 1.21064 0.93256 0.99007 1.01766 1.20961 1.00025 0.92122 0.98391 1.20350 0.92544 0.97821 0.95800 1.18750 0.93321 0.91613 0.98408 1.20859 1.28248 1.15319 0.90583 0.90905 1.24966 0.95956 0.97303 0.94845 1.69897 1.36604 1.36439 1.10765 0.86815 0.78953 0.82569 0.81272 1.20094 1.21151 1.18900 1.17370 0.91739 0.82253 1.00408 1.91443 1.88130 1.45761 1.85933 0.95733 0.91448 0.91500 0.90296 0.92015 0.95060 0.89870 0.93675 0.86048 0.86148 0.85475 0.94956 0.95554 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.57 60.07 0.57 0.84 16 2 N -0.54 -7.54 5.01 -252.72 -1.27 -8.80 16 3 C 0.02 0.24 8.10 60.06 0.49 0.72 16 4 C 0.10 1.43 5.00 -4.97 -0.02 1.40 16 5 C -0.12 -2.02 5.16 -104.55 -0.54 -2.56 16 6 C -0.10 -1.52 9.67 -39.59 -0.38 -1.90 16 7 C -0.13 -2.03 10.05 -39.57 -0.40 -2.43 16 8 C -0.10 -1.76 9.68 -39.59 -0.38 -2.15 16 9 C -0.06 -1.37 5.08 -104.55 -0.53 -1.90 16 10 C 0.02 0.39 3.95 -29.03 -0.11 0.28 16 11 C -0.51 -14.76 9.65 -34.44 -0.33 -15.09 16 12 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 15 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 19 C 0.10 2.06 5.82 -39.42 -0.23 1.83 16 20 F -0.13 -2.87 13.11 2.25 0.03 -2.84 16 21 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 22 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 23 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 24 H 0.08 1.33 5.06 -51.93 -0.26 1.07 16 25 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 26 H 0.03 0.47 7.81 -51.93 -0.41 0.06 16 27 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 28 H 0.05 0.70 7.93 -51.93 -0.41 0.28 16 29 H 0.12 1.46 8.04 -52.49 -0.42 1.04 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.13 2.16 8.06 -52.48 -0.42 1.73 16 32 H 0.03 0.76 7.11 -51.93 -0.37 0.39 16 33 H 0.03 0.65 7.22 -51.93 -0.37 0.27 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 283.50 15.07 4.27 4.27 Total: -1.00 -31.20 283.50 -7.61 -38.81 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.78 Total: -2.43 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.97 Total: -18.98 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.49 Total: -35.79 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.03 Total: -2.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.20 -7.61 -38.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.536 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds