Wall clock time and date at job start Mon Mar 30 2020 17:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 110.99672 * 2 1 4 4 C 1.46897 * 110.99804 * 123.95706 * 2 1 3 5 5 C 1.50705 * 109.46831 * 170.00090 * 4 2 1 6 6 C 1.38214 * 120.01059 * 259.99669 * 5 4 2 7 7 C 1.38225 * 120.02588 * 179.97438 * 6 5 4 8 8 C 1.38270 * 120.04716 * 0.02562 * 7 6 5 9 9 C 1.38172 * 120.02638 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.01056 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47114 * 264.97766 * 10 9 8 12 12 H 1.08000 * 119.99964 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99981 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99727 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00010 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47046 * 89.99876 * 15 13 11 17 17 H 1.48498 * 109.46975 * 210.00323 * 15 13 11 18 18 H 1.48502 * 109.46845 * 329.99725 * 15 13 11 19 19 C 1.38440 * 120.01080 * 79.97484 * 5 4 2 20 20 F 1.35101 * 120.02694 * 0.02562 * 19 5 4 21 21 H 1.09001 * 109.47327 * 296.04320 * 1 2 3 22 22 H 1.08995 * 109.47187 * 56.04928 * 1 2 3 23 23 H 1.09001 * 109.46980 * 176.04564 * 1 2 3 24 24 H 1.09006 * 109.47044 * 183.95354 * 3 2 1 25 25 H 1.09001 * 109.47798 * 303.95167 * 3 2 1 26 26 H 1.09000 * 109.47342 * 63.95719 * 3 2 1 27 27 H 1.08995 * 109.47473 * 50.00288 * 4 2 1 28 28 H 1.09002 * 109.47033 * 289.99646 * 4 2 1 29 29 H 1.07999 * 119.99303 * 0.02562 * 6 5 4 30 30 H 1.07993 * 119.97787 * 179.72447 * 7 6 5 31 31 H 1.08003 * 119.98296 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.46941 * 24.97855 * 10 9 8 33 33 H 1.08999 * 109.47203 * 144.97980 * 10 9 8 34 34 H 0.97006 * 119.99781 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4818 -0.9525 0.9728 6 6 3.9791 -2.1477 0.4885 7 6 5.3423 -2.3189 0.3367 8 6 6.2099 -1.2951 0.6697 9 6 5.7150 -0.0994 1.1540 10 6 6.6610 1.0164 1.5163 11 6 6.9640 0.9591 2.9914 12 1 6.5167 0.1912 3.6051 13 6 7.8123 1.8870 3.5575 14 7 8.0771 1.8366 4.8447 15 14 8.5854 3.2156 2.4961 16 1 7.7000 4.4075 2.4720 17 1 9.9071 3.5920 3.0588 18 1 8.7638 2.7033 1.1137 19 6 4.3495 0.0734 1.3061 20 9 3.8645 1.2421 1.7796 21 1 -0.3634 0.4512 0.9233 22 1 -0.3633 0.5739 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0828 1.3433 -0.0709 25 1 1.5898 1.9164 -0.8524 26 1 1.7044 1.8723 0.9233 27 1 1.5090 -1.7407 1.1755 28 1 1.7975 -0.2248 2.0628 29 1 3.3023 -2.9479 0.2277 30 1 5.7302 -3.2547 -0.0376 31 1 7.2749 -1.4301 0.5511 32 1 7.5863 0.9063 0.9507 33 1 6.2008 1.9751 1.2769 34 1 8.6742 2.4892 5.2429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:09 Heat of formation + Delta-G solvation = -38.582726 kcal Electronic energy + Delta-G solvation = -16883.081529 eV Core-core repulsion = 14115.464283 eV Total energy + Delta-G solvation = -2767.617246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.84441 -40.19511 -38.12464 -35.48282 -33.57385 -32.00728 -29.53032 -28.50138 -27.68539 -25.03805 -23.64283 -22.40872 -21.32224 -19.06042 -18.35317 -17.53837 -17.23497 -16.72740 -16.16616 -15.87808 -15.56857 -15.47121 -14.98910 -14.35323 -14.23520 -13.95372 -13.66962 -13.37632 -13.21576 -13.06471 -12.88133 -12.52400 -12.45599 -12.33269 -12.07135 -11.94657 -11.72451 -11.46873 -10.83841 -9.70160 -9.39635 -9.29295 -8.34745 -6.39994 0.31414 0.44644 1.32187 1.33355 1.45318 2.30830 2.69018 2.99208 3.17618 3.49580 3.71756 3.90621 4.12141 4.23273 4.32906 4.42981 4.48449 4.54177 4.57593 4.69473 4.76253 4.90625 4.94439 5.00026 5.01086 5.12913 5.32617 5.42955 5.50108 5.54202 5.71885 5.91178 6.03532 6.11343 6.21347 6.64246 7.23128 8.81976 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029949 B = 0.007287 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.703045 B = 3841.606860 C = 4317.772575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.020 3.980 4 C 0.100 3.900 5 C -0.121 4.121 6 C -0.088 4.088 7 C -0.119 4.119 8 C -0.108 4.108 9 C -0.105 4.105 10 C 0.024 3.976 11 C -0.519 4.519 12 H 0.025 0.975 13 C 0.010 3.990 14 N -0.947 5.947 15 Si 0.948 3.052 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.243 1.243 19 C 0.073 3.927 20 F -0.153 7.153 21 H 0.023 0.977 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.018 0.982 27 H 0.115 0.885 28 H 0.027 0.973 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.134 0.866 32 H 0.041 0.959 33 H 0.018 0.982 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 -6.783 -12.791 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.129 4.129 4 C -0.027 4.027 5 C -0.122 4.122 6 C -0.107 4.107 7 C -0.137 4.137 8 C -0.126 4.126 9 C -0.106 4.106 10 C -0.013 4.013 11 C -0.557 4.557 12 H 0.044 0.956 13 C -0.188 4.188 14 N -0.587 5.587 15 Si 0.771 3.229 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.166 1.166 19 C 0.054 3.946 20 F -0.131 7.131 21 H 0.042 0.958 22 H 0.098 0.902 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.134 0.866 28 H 0.045 0.955 29 H 0.183 0.817 30 H 0.181 0.819 31 H 0.152 0.848 32 H 0.059 0.941 33 H 0.036 0.964 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.892 -6.881 -13.065 18.959 hybrid contribution 0.325 1.655 1.307 2.134 sum -11.567 -5.226 -11.758 17.302 Atomic orbital electron populations 1.22488 0.85367 1.03591 1.00966 1.62102 1.09283 1.13543 1.42062 1.22599 1.00688 0.89168 1.00402 1.20988 0.90006 1.00211 0.91545 1.19971 0.95458 0.94051 1.02757 1.21168 0.95945 0.96015 0.97524 1.21512 0.93043 0.99409 0.99723 1.21175 1.01121 0.91871 0.98440 1.20280 0.92716 0.98465 0.99166 1.18538 0.94508 0.92924 0.95347 1.21075 1.27767 1.14057 0.92810 0.95620 1.25958 0.96555 1.00003 0.96237 1.70050 1.37831 1.37899 1.12918 0.85687 0.78047 0.78984 0.80190 1.19567 1.20158 1.16645 1.17733 0.92134 0.82829 1.01928 1.91386 1.88283 1.46992 1.86486 0.95830 0.90181 0.89436 0.92899 0.90086 0.96318 0.86640 0.95481 0.81740 0.81905 0.84787 0.94118 0.96366 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.57 127.69 1.22 1.65 16 2 N -0.55 -14.07 5.01 -953.47 -4.78 -18.84 16 3 C 0.02 0.57 8.10 127.69 1.03 1.61 16 4 C 0.10 2.71 5.00 85.56 0.43 3.13 16 5 C -0.12 -3.93 5.16 -19.82 -0.10 -4.04 16 6 C -0.09 -2.32 9.67 22.26 0.22 -2.11 16 7 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 8 C -0.11 -3.83 9.68 22.26 0.22 -3.62 16 9 C -0.11 -4.60 5.08 -19.82 -0.10 -4.70 16 10 C 0.02 1.21 3.95 29.10 0.11 1.32 16 11 C -0.52 -31.33 9.65 25.60 0.25 -31.08 16 12 H 0.03 1.73 7.98 -2.91 -0.02 1.70 16 13 C 0.01 0.59 5.47 84.66 0.46 1.05 16 14 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 15 Si 0.95 45.26 27.47 68.60 1.88 47.14 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.24 -10.67 6.54 99.48 0.65 -10.02 16 19 C 0.07 3.03 5.82 22.37 0.13 3.16 16 20 F -0.15 -6.90 13.11 44.97 0.59 -6.31 16 21 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 22 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 23 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 24 H 0.05 1.82 5.06 -2.38 -0.01 1.81 16 25 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 26 H 0.02 0.57 7.81 -2.39 -0.02 0.55 16 27 H 0.12 2.35 7.93 -2.39 -0.02 2.33 16 28 H 0.03 0.83 7.93 -2.39 -0.02 0.81 16 29 H 0.17 2.95 8.04 -2.91 -0.02 2.93 16 30 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.04 1.93 7.11 -2.39 -0.02 1.91 16 33 H 0.02 0.92 7.22 -2.39 -0.02 0.90 16 34 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 Total: -1.00 -71.59 283.50 3.11 -68.48 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.02 Total: 6.53 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 4.09 Total: -36.62 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -4.48 Total: -79.22 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.59 Total: -6.31 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -71.59 3.11 -68.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.901 kcal (2) G-P(sol) polarization free energy of solvation -71.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds