Wall clock time and date at job start Mon Mar 30 2020 17:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00131 * 2 1 4 4 C 1.50698 * 109.47392 * 180.02562 * 3 2 1 5 5 C 1.38219 * 120.01066 * 260.00002 * 4 3 2 6 6 C 1.38224 * 120.02199 * 179.97438 * 5 4 3 7 7 C 1.38264 * 120.05574 * 0.02562 * 6 5 4 8 8 C 1.38178 * 120.02302 * 359.95253 * 7 6 5 9 9 C 1.50706 * 120.01332 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46953 * 265.00610 * 9 8 7 11 11 C 1.50706 * 109.46573 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72054 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47405 * 60.00219 * 15 13 11 17 17 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 19 19 C 1.38439 * 120.01461 * 80.23057 * 4 3 2 20 20 F 1.35105 * 120.02611 * 0.04401 * 19 4 3 21 21 H 1.08998 * 109.47165 * 60.00461 * 1 2 3 22 22 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46884 * 299.99913 * 1 2 3 24 24 H 1.00906 * 111.00047 * 236.05044 * 2 1 3 25 25 H 1.08996 * 109.47012 * 59.99880 * 3 2 1 26 26 H 1.09003 * 109.47219 * 299.99941 * 3 2 1 27 27 H 1.07993 * 119.98832 * 359.95658 * 5 4 3 28 28 H 1.08007 * 119.97587 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.99402 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.46974 * 145.00358 * 9 8 7 31 31 H 1.09001 * 109.46547 * 25.00449 * 9 8 7 32 32 H 1.09000 * 109.47486 * 60.00062 * 10 9 8 33 33 H 1.09001 * 109.47362 * 299.99339 * 10 9 8 34 34 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.1990 1.5204 1.1778 6 6 5.5807 1.4831 1.1776 7 6 6.2672 1.2571 -0.0012 8 6 5.5724 1.0673 -1.1804 9 6 6.3208 0.8204 -2.4649 10 6 6.5028 2.1434 -3.2115 11 6 7.2518 1.8965 -4.4957 12 1 7.5704 0.8968 -4.7514 13 6 7.5348 2.9479 -5.3416 14 7 7.1516 4.1662 -5.0276 15 14 8.4625 2.6418 -6.9338 16 1 7.6925 1.6966 -7.7815 17 1 8.6393 3.9260 -7.6584 18 1 9.7939 2.0598 -6.6270 19 6 4.1882 1.1096 -1.1823 20 9 3.5080 0.9301 -2.3358 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8306 -0.5261 -0.7814 25 1 1.6460 1.8947 0.8899 26 1 1.6460 1.8948 -0.8900 27 1 3.6639 1.6977 2.0990 28 1 6.1247 1.6305 2.0989 29 1 7.3468 1.2285 -0.0003 30 1 5.7554 0.1268 -3.0873 31 1 7.2978 0.3929 -2.2397 32 1 7.0682 2.8370 -2.5891 33 1 5.5258 2.5710 -3.4367 34 1 7.3511 4.9058 -5.6226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:12 Heat of formation + Delta-G solvation = -40.263994 kcal Electronic energy + Delta-G solvation = -16326.342792 eV Core-core repulsion = 13558.652640 eV Total energy + Delta-G solvation = -2767.690151 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.44984 -38.99275 -36.17594 -34.05247 -32.20340 -30.85047 -28.91671 -26.67934 -25.12198 -23.67363 -22.12075 -21.26607 -20.03207 -17.11594 -16.47624 -16.24102 -15.94063 -15.32412 -14.83057 -14.47903 -14.37078 -14.12878 -13.30355 -13.00826 -12.75061 -12.56077 -12.34740 -12.15407 -11.98413 -11.73772 -11.39837 -11.08412 -10.88384 -10.71989 -10.46886 -9.85505 -9.65625 -9.12379 -8.70900 -8.36440 -8.33704 -8.11908 -5.99234 -4.02431 1.44482 1.57868 3.34046 3.38190 3.40760 3.82716 4.34229 4.46552 4.63164 4.78954 4.99408 5.19706 5.26705 5.32899 5.36331 5.41022 5.55191 5.60608 5.71500 5.75142 6.06469 6.21312 6.44707 6.54149 6.60897 6.64338 6.80441 6.85521 6.96608 7.20873 7.27795 7.66526 7.79612 7.99630 8.40079 9.03804 9.61396 11.11932 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032862 B = 0.005528 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.847141 B = 5063.541019 C = 5559.860209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.101 3.899 4 C -0.122 4.122 5 C -0.093 4.093 6 C -0.131 4.131 7 C -0.094 4.094 8 C -0.090 4.090 9 C -0.079 4.079 10 C 0.031 3.969 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.102 3.898 20 F -0.137 7.137 21 H 0.022 0.978 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.345 0.655 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 -6.101 12.266 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.321 5.321 3 C -0.027 4.027 4 C -0.123 4.123 5 C -0.112 4.112 6 C -0.149 4.149 7 C -0.112 4.112 8 C -0.091 4.091 9 C -0.117 4.117 10 C -0.006 4.006 11 C -0.561 4.561 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.082 3.918 20 F -0.115 7.115 21 H 0.041 0.959 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.163 0.837 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.753 -5.987 12.835 16.649 hybrid contribution 0.208 0.261 -2.031 2.058 sum -8.544 -5.727 10.804 14.917 Atomic orbital electron populations 1.22200 0.87780 1.01877 1.00416 1.60514 1.07571 1.13664 1.50344 1.20781 0.90207 0.90211 1.01547 1.19664 0.95331 1.04688 0.92607 1.20710 0.93952 1.00056 0.96479 1.21112 0.94141 1.01450 0.98189 1.20997 1.00255 0.98684 0.91272 1.20443 0.91850 0.98865 0.97909 1.20806 0.98024 1.01855 0.90994 1.19056 0.97220 0.90062 0.94244 1.21190 1.36073 0.94007 1.04783 0.92604 1.25016 0.95970 0.95130 0.98222 1.69962 1.46703 0.99217 1.37486 0.86641 0.80364 0.77386 0.83516 1.20212 1.21270 1.20197 1.17448 0.89773 1.03327 0.81270 1.91466 1.79767 1.92651 1.47629 0.95891 0.91381 0.91730 0.83738 0.89905 0.93926 0.85713 0.85820 0.85230 0.91903 0.91682 0.96404 0.96449 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 60.06 0.64 0.90 16 2 N -0.69 -8.48 6.84 -122.43 -0.84 -9.32 16 3 C 0.10 1.32 5.54 -4.98 -0.03 1.29 16 4 C -0.12 -1.85 5.40 -104.56 -0.56 -2.41 16 5 C -0.09 -1.26 9.67 -39.59 -0.38 -1.64 16 6 C -0.13 -1.77 10.04 -39.58 -0.40 -2.17 16 7 C -0.09 -1.50 9.68 -39.59 -0.38 -1.89 16 8 C -0.09 -1.69 5.14 -104.55 -0.54 -2.23 16 9 C -0.08 -1.70 5.05 -27.88 -0.14 -1.85 16 10 C 0.03 0.83 4.96 -27.88 -0.14 0.69 16 11 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.31 13.29 55.43 0.74 -26.58 16 15 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.10 1.84 7.19 -39.42 -0.28 1.56 16 20 F -0.14 -2.66 15.97 2.25 0.04 -2.62 16 21 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.34 4.42 8.81 -39.29 -0.35 4.07 16 25 H 0.08 0.93 8.00 -51.93 -0.42 0.52 16 26 H 0.04 0.59 7.94 -51.93 -0.41 0.18 16 27 H 0.12 1.34 8.04 -52.49 -0.42 0.92 16 28 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.06 1.35 7.80 -51.93 -0.41 0.95 16 31 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 296.40 15.07 4.47 4.47 Total: -1.00 -31.10 296.40 -8.16 -39.26 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.92 Total: -0.57 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -2.62 Total: -21.48 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.10 Total: -35.89 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.10 -8.16 -39.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.006 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds