Wall clock time and date at job start Mon Mar 30 2020 17:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46813 * 2 1 4 4 H 1.09007 * 109.47239 * 305.10529 * 3 2 1 5 5 C 1.50697 * 109.47271 * 185.10652 * 3 2 1 6 6 H 1.07997 * 119.99899 * 239.99963 * 5 3 2 7 7 C 1.37882 * 119.99790 * 59.99622 * 5 3 2 8 8 N 1.31508 * 120.00203 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99767 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47145 * 90.00135 * 9 7 5 11 11 H 1.48503 * 109.46958 * 210.00124 * 9 7 5 12 12 H 1.48503 * 109.46879 * 329.99744 * 9 7 5 13 13 N 1.46906 * 109.47472 * 65.10329 * 3 2 1 14 14 C 1.46900 * 110.99920 * 205.23091 * 13 3 2 15 15 H 1.09004 * 109.47252 * 326.55688 * 14 13 3 16 16 C 1.52997 * 109.47248 * 86.56486 * 14 13 3 17 17 C 1.52995 * 109.46760 * 206.56373 * 14 13 3 18 18 C 1.50697 * 109.47740 * 64.99895 * 17 14 13 19 19 C 1.34517 * 125.78789 * 89.99348 * 18 17 14 20 20 C 1.41390 * 106.83716 * 180.02562 * 19 18 17 21 21 C 1.34506 * 106.84511 * 0.02562 * 20 19 18 22 22 O 1.34300 * 125.79048 * 269.69798 * 18 17 14 23 23 H 1.08998 * 109.47430 * 58.60304 * 1 2 3 24 24 H 1.09001 * 109.46894 * 178.60042 * 1 2 3 25 25 H 1.09000 * 109.47630 * 298.60207 * 1 2 3 26 26 H 1.08997 * 109.47355 * 239.99601 * 2 1 3 27 27 H 1.09003 * 109.46693 * 119.99474 * 2 1 3 28 28 H 0.97002 * 120.00293 * 180.02562 * 8 7 5 29 29 H 1.00897 * 110.99402 * 81.27431 * 13 3 2 30 30 H 1.09000 * 109.47355 * 54.94584 * 16 14 13 31 31 H 1.09004 * 109.46696 * 294.94838 * 16 14 13 32 32 H 1.08991 * 109.47239 * 174.94899 * 16 14 13 33 33 H 1.09005 * 109.47094 * 185.00132 * 17 14 13 34 34 H 1.09003 * 109.47516 * 304.99921 * 17 14 13 35 35 H 1.07993 * 126.57984 * 0.04507 * 19 18 17 36 36 H 1.07998 * 126.57562 * 179.97438 * 20 19 18 37 37 H 1.08000 * 125.79079 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6038 1.9821 -0.8408 5 6 3.5416 1.4445 -0.1265 6 1 4.1482 1.8886 0.6489 7 6 4.1410 0.8792 -1.2320 8 7 3.4024 0.3388 -2.1763 9 14 6.0025 0.8811 -1.3884 10 1 6.5525 -0.3512 -0.7688 11 1 6.3785 0.9234 -2.8244 12 1 6.5562 2.0727 -0.6965 13 7 1.6534 2.0986 1.2563 14 6 1.5690 3.5552 1.0852 15 1 2.3168 3.8800 0.3617 16 6 0.1741 3.9293 0.5801 17 6 1.8263 4.2421 2.4279 18 6 3.2430 3.9736 2.8662 19 6 4.3145 4.7316 2.5717 20 6 5.4319 4.1152 3.1804 21 6 4.9765 3.0172 3.8098 22 8 3.6489 2.9401 3.6217 23 1 -0.3634 0.5354 -0.8772 24 1 -0.3633 -1.0274 -0.0251 25 1 -0.3634 0.4919 0.9022 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8241 -0.0592 -2.9539 29 1 2.2908 1.8582 2.0006 30 1 -0.5782 3.5263 1.2581 31 1 0.0250 3.5135 -0.4165 32 1 0.0817 5.0145 0.5385 33 1 1.6765 5.3164 2.3210 34 1 1.1349 3.8513 3.1744 35 1 4.3201 5.6373 1.9836 36 1 6.4550 4.4594 3.1458 37 1 5.5758 2.3192 4.3756 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038092590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:02 Heat of formation + Delta-G solvation = -3.257700 kcal Electronic energy + Delta-G solvation = -17618.564181 eV Core-core repulsion = 14975.939047 eV Total energy + Delta-G solvation = -2642.625133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.15215 -36.98831 -34.03138 -32.56049 -31.55778 -30.14174 -28.83619 -26.00544 -25.60232 -22.71442 -21.38624 -20.56756 -19.56433 -19.35728 -16.95909 -16.62514 -15.57234 -15.07140 -14.49653 -14.40856 -13.60584 -13.12820 -12.86935 -12.70061 -12.44603 -12.34044 -12.01514 -11.55897 -11.43239 -11.30853 -11.12537 -11.00206 -10.74879 -10.55138 -10.43052 -10.03943 -9.55836 -9.48758 -9.41443 -8.97245 -8.31895 -8.00677 -7.20068 -5.94221 -4.05853 2.15746 3.01715 3.29072 3.35981 3.40183 3.40263 4.44184 5.02916 5.19635 5.31903 5.38663 5.45401 5.51040 5.78530 5.83012 6.07757 6.16850 6.22715 6.28947 6.40798 6.45694 6.51475 6.55831 6.68884 6.76925 6.87886 6.90571 7.19294 7.22405 7.51100 7.54943 7.66191 7.83994 8.15535 8.23951 8.40505 8.75321 9.07511 9.61338 11.05856 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.011527 C = 0.007858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.034809 B = 2428.512483 C = 3562.446794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.537 4.537 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.685 5.685 14 C 0.088 3.912 15 H 0.052 0.948 16 C -0.134 4.134 17 C -0.043 4.043 18 C 0.005 3.995 19 C -0.216 4.216 20 C -0.214 4.214 21 C -0.046 4.046 22 O -0.170 6.170 23 H 0.036 0.964 24 H 0.023 0.977 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 6.782 8.569 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.576 4.576 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.022 4.022 15 H 0.070 0.930 16 C -0.192 4.192 17 C -0.081 4.081 18 C -0.045 4.045 19 C -0.235 4.235 20 C -0.233 4.233 21 C -0.114 4.114 22 O -0.066 6.066 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.093 6.373 8.395 10.746 hybrid contribution 2.494 0.250 -0.376 2.535 sum 0.401 6.623 8.019 10.408 Atomic orbital electron populations 1.21692 0.99028 0.98223 1.00363 1.21492 0.92092 0.99382 1.01531 1.19165 0.92712 0.91131 0.86224 0.94966 1.21874 0.92805 1.37676 1.05282 0.92953 1.24904 0.97640 0.95166 0.95762 1.69875 1.34626 1.38595 1.09454 0.86719 0.86560 0.78408 0.77115 1.20737 1.21279 1.20001 1.61031 1.55517 1.04945 1.10133 1.21391 0.96758 0.90601 0.93488 0.93014 1.21757 0.96760 0.99008 1.01658 1.20492 0.87822 1.01210 0.98583 1.22452 0.97353 0.87979 0.96716 1.21467 0.92069 1.03479 1.06515 1.21718 0.99974 0.98062 1.03540 1.23866 0.81553 1.00747 1.05244 1.84027 1.23714 1.42953 1.55922 0.94530 0.95791 0.93329 0.89230 0.95289 0.93018 0.85147 0.92552 0.92445 0.93693 0.89240 0.89908 0.84082 0.84126 0.78668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.78 37.16 0.36 -2.48 16 2 C -0.11 -2.60 5.45 -26.73 -0.15 -2.75 16 3 C 0.22 5.39 1.78 -68.86 -0.12 5.26 16 4 H 0.03 0.89 7.27 -51.93 -0.38 0.51 16 5 C -0.54 -14.75 8.28 -34.44 -0.29 -15.03 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.89 -25.38 11.29 55.43 0.63 -24.76 16 9 Si 0.88 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.68 -14.57 5.54 -100.95 -0.56 -15.13 16 14 C 0.09 1.63 2.43 -67.72 -0.16 1.46 16 15 H 0.05 1.10 7.63 -51.93 -0.40 0.71 16 16 C -0.13 -2.15 9.40 37.16 0.35 -1.80 16 17 C -0.04 -0.67 5.34 -27.89 -0.15 -0.82 16 18 C 0.01 0.09 5.85 -35.63 -0.21 -0.12 16 19 C -0.22 -3.61 10.81 -39.70 -0.43 -4.04 16 20 C -0.21 -3.39 10.91 -39.70 -0.43 -3.82 16 21 C -0.05 -0.73 12.09 29.41 0.36 -0.37 16 22 O -0.17 -3.02 9.73 5.69 0.06 -2.97 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.97 7.79 -51.93 -0.40 0.57 16 26 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.33 7.30 6.34 -39.29 -0.25 7.05 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.02 7.61 -51.93 -0.40 0.62 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.14 2.11 8.06 -52.49 -0.42 1.68 16 36 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.20 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -29.34 304.64 -7.17 -36.51 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.90 Total: 7.83 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -0.96 Total: -22.73 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.07 Total: -39.88 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.06 Total: -2.97 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.34 -7.17 -36.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038092590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.255 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds