Wall clock time and date at job start Mon Mar 30 2020 17:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46595 * 2 1 4 4 N 1.46496 * 109.47112 * 120.00117 * 2 1 3 5 5 C 1.46506 * 119.99759 * 299.99885 * 4 2 1 6 6 C 1.50699 * 109.46928 * 90.00349 * 5 4 2 7 7 H 1.08003 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99749 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00236 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47160 * 89.99730 * 10 8 6 12 12 H 1.48503 * 109.47061 * 209.99752 * 10 8 6 13 13 H 1.48500 * 109.46598 * 329.99398 * 10 8 6 14 14 C 1.34771 * 120.00157 * 120.00213 * 4 2 1 15 15 O 1.21280 * 119.99939 * 179.97438 * 14 4 2 16 16 C 1.50696 * 119.99966 * 359.97438 * 14 4 2 17 17 C 1.54638 * 111.03806 * 292.02022 * 16 14 4 18 18 C 1.51098 * 104.72915 * 217.33666 * 17 16 14 19 19 C 1.30519 * 111.10235 * 16.43445 * 18 17 16 20 20 C 1.51101 * 111.10589 * 0.02562 * 19 18 17 21 21 H 1.08993 * 109.47250 * 299.99624 * 1 2 3 22 22 H 1.08998 * 109.47223 * 60.00026 * 1 2 3 23 23 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46748 * 240.00198 * 2 1 3 25 25 H 1.09000 * 109.46385 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47314 * 299.99918 * 3 2 1 27 27 H 1.08993 * 109.47015 * 60.00232 * 3 2 1 28 28 H 1.09004 * 109.47073 * 210.00177 * 5 4 2 29 29 H 1.09000 * 109.47212 * 330.00260 * 5 4 2 30 30 H 0.97001 * 119.99269 * 180.02562 * 9 8 6 31 31 H 1.09002 * 110.92001 * 56.03103 * 16 14 4 32 32 H 1.09004 * 110.38602 * 336.14999 * 17 16 14 33 33 H 1.09001 * 110.38279 * 98.52251 * 17 16 14 34 34 H 1.08000 * 124.44557 * 196.46025 * 18 17 16 35 35 H 1.08003 * 124.44582 * 180.02562 * 19 18 17 36 36 H 1.09002 * 110.38451 * 224.75001 * 20 19 18 37 37 H 1.09000 * 110.48068 * 102.42636 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1900 2.5267 6 6 0.3830 -0.8388 2.9830 7 1 -0.1175 -1.5529 2.3457 8 6 -0.1499 -0.5215 4.2143 9 7 -1.2685 -1.0873 4.6123 10 14 0.7160 0.7130 5.3169 11 1 0.2109 2.0783 5.0236 12 1 0.4470 0.3806 6.7390 13 1 2.1785 0.6614 5.0645 14 6 2.7932 -1.7864 1.0725 15 8 3.1978 -2.3578 2.0627 16 6 3.1568 -2.3015 -0.2962 17 6 1.9145 -2.8626 -1.0263 18 6 2.4250 -4.0665 -1.7834 19 6 3.5884 -4.4475 -1.3309 20 6 4.0476 -3.5617 -0.1961 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 2.4629 -0.4292 3.2292 29 1 1.5294 0.8907 2.4843 30 1 -1.6436 -0.8638 5.4784 31 1 3.6417 -1.5252 -0.8881 32 1 1.1535 -3.1620 -0.3055 33 1 1.5134 -2.1214 -1.7175 34 1 1.8967 -4.5481 -2.5929 35 1 4.1493 -5.2859 -1.7168 36 1 5.0969 -3.2955 -0.3230 37 1 3.8960 -4.0595 0.7617 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076985243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:21 Heat of formation + Delta-G solvation = -20.678787 kcal Electronic energy + Delta-G solvation = -17708.759297 eV Core-core repulsion = 15065.378729 eV Total energy + Delta-G solvation = -2643.380568 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.94039 -37.39670 -35.96713 -32.72986 -30.97652 -29.85207 -28.07525 -27.47617 -26.70187 -22.98702 -21.75045 -20.50617 -18.73956 -17.90860 -17.03028 -16.72505 -15.99939 -15.11278 -14.38886 -14.23734 -13.59732 -13.46100 -12.73197 -12.62107 -12.49608 -12.22535 -12.02639 -11.78318 -11.68841 -11.63424 -11.27144 -11.10096 -10.91935 -10.87696 -10.84133 -10.43016 -10.25812 -10.05758 -9.43288 -8.93622 -8.75167 -8.55466 -7.67081 -6.05397 -4.02439 2.35561 3.27818 3.36512 3.36881 3.41301 3.82912 4.42384 4.68485 4.78790 5.07172 5.17863 5.28188 5.34847 5.38981 5.52232 5.63048 5.75699 5.80200 5.90454 5.98773 6.05616 6.11114 6.12588 6.27540 6.32580 6.41668 6.54262 6.61125 6.78609 6.98262 7.01155 7.04486 7.42506 7.65851 8.32835 8.51499 8.97633 9.04314 9.55667 11.07851 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027487 B = 0.008003 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.432435 B = 3498.061036 C = 3770.322125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 C -0.164 4.164 4 N -0.586 5.586 5 C 0.214 3.786 6 C -0.520 4.520 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.871 3.129 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.516 3.484 15 O -0.540 6.540 16 C -0.115 4.115 17 C -0.090 4.090 18 C -0.169 4.169 19 C -0.164 4.164 20 C -0.088 4.088 21 H 0.080 0.920 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 0.938 -13.938 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 C -0.222 4.222 4 N -0.317 5.317 5 C 0.094 3.906 6 C -0.558 4.558 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.303 3.697 15 O -0.418 6.418 16 C -0.137 4.137 17 C -0.127 4.127 18 C -0.187 4.187 19 C -0.182 4.182 20 C -0.125 4.125 21 H 0.099 0.901 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.302 0.661 -13.226 15.122 hybrid contribution 0.180 0.629 0.620 0.901 sum 7.482 1.290 -12.606 14.716 Atomic orbital electron populations 1.22140 0.94297 1.02790 1.02235 1.21137 0.95434 0.92834 0.88112 1.22184 1.00856 0.96713 1.02413 1.47976 1.48697 1.27239 1.07816 1.19623 0.97181 0.94166 0.79637 1.21340 1.05947 1.25600 1.02921 0.90555 1.24852 0.94746 0.96128 0.97367 1.69899 1.19704 1.43333 1.20803 0.86921 0.80935 0.81739 0.80618 1.20196 1.21035 1.18910 1.20113 0.78816 0.80521 0.90263 1.90647 1.54605 1.56955 1.39585 1.22151 0.97792 0.98444 0.95281 1.21412 0.97182 0.95874 0.98206 1.23235 0.96968 0.98669 0.99851 1.23295 0.97580 0.99860 0.97499 1.21284 0.98685 0.93618 0.98935 0.90129 0.93279 0.92379 0.89988 0.92907 0.92034 0.91657 0.94379 0.95639 0.92685 0.88586 0.89735 0.90549 0.85884 0.85956 0.91254 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.47 37.16 0.31 -2.29 16 2 C 0.13 2.05 2.78 -67.93 -0.19 1.86 16 3 C -0.16 -2.27 9.17 37.16 0.34 -1.93 16 4 N -0.59 -11.99 2.39 -167.47 -0.40 -12.39 16 5 C 0.21 5.22 3.66 -5.19 -0.02 5.20 16 6 C -0.52 -14.65 8.38 -34.44 -0.29 -14.94 16 7 H 0.08 2.35 7.87 -52.48 -0.41 1.94 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 10 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 14 C 0.52 10.65 6.95 -10.99 -0.08 10.57 16 15 O -0.54 -13.49 15.09 5.56 0.08 -13.41 16 16 C -0.12 -1.77 2.49 -90.05 -0.22 -2.00 16 17 C -0.09 -1.25 5.43 -26.83 -0.15 -1.40 16 18 C -0.17 -2.07 10.77 -35.70 -0.38 -2.46 16 19 C -0.16 -2.03 10.77 -35.70 -0.38 -2.42 16 20 C -0.09 -1.29 6.18 -26.82 -0.17 -1.45 16 21 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.08 1.10 4.24 -51.93 -0.22 0.88 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.00 6.66 -51.93 -0.35 0.66 16 28 H 0.04 1.02 6.48 -51.93 -0.34 0.68 16 29 H 0.03 0.59 5.85 -51.93 -0.30 0.28 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.10 1.26 7.62 -51.93 -0.40 0.86 16 32 H 0.08 1.41 7.88 -51.93 -0.41 1.00 16 33 H 0.08 0.91 6.87 -51.93 -0.36 0.56 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.66 6.96 -51.93 -0.36 1.30 16 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -32.62 292.70 -6.75 -39.37 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.63 Total: 1.19 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.32 Total: -9.28 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.37 Total: -39.24 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.62 -6.75 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076985243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.694 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds