Wall clock time and date at job start Mon Mar 30 2020 17:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50697 * 119.99677 * 2 1 4 4 C 1.33119 * 120.00464 * 180.02562 * 2 1 3 5 5 C 1.46962 * 119.99676 * 352.09648 * 4 2 1 6 6 O 1.21656 * 119.99765 * 0.06985 * 5 4 2 7 7 N 1.34768 * 119.99785 * 180.02562 * 5 4 2 8 8 C 1.36820 * 120.00418 * 357.02285 * 7 5 4 9 9 H 1.07997 * 120.00051 * 235.37989 * 8 7 5 10 10 C 1.39082 * 119.99752 * 55.37511 * 8 7 5 11 11 N 1.31340 * 119.99672 * 7.55394 * 10 8 7 12 12 Si 1.86799 * 119.99768 * 187.55168 * 10 8 7 13 13 H 1.48497 * 109.47384 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46902 * 120.00305 * 12 10 8 15 15 H 1.48499 * 109.46737 * 239.99782 * 12 10 8 16 16 C 1.46506 * 120.00129 * 176.74633 * 7 5 4 17 17 C 1.54264 * 110.03481 * 237.90873 * 16 7 5 18 18 C 1.54963 * 104.15799 * 217.13587 * 17 16 7 19 19 C 1.54883 * 102.77912 * 37.88924 * 18 17 16 20 20 C 1.53877 * 110.03251 * 120.68816 * 16 7 5 21 21 H 1.09002 * 109.46980 * 264.64399 * 1 2 3 22 22 H 1.09000 * 109.47270 * 24.64720 * 1 2 3 23 23 H 1.09007 * 109.46891 * 144.64954 * 1 2 3 24 24 H 1.08998 * 109.47743 * 240.00059 * 3 2 1 25 25 H 1.09003 * 109.47432 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.46961 * 120.00061 * 3 2 1 27 27 H 1.07997 * 120.00326 * 172.09712 * 4 2 1 28 28 H 0.97002 * 120.00019 * 184.99154 * 11 10 8 29 29 H 1.09002 * 110.01221 * 359.30653 * 16 7 5 30 30 H 1.08998 * 110.48330 * 335.78226 * 17 16 7 31 31 H 1.09001 * 110.48140 * 98.42217 * 17 16 7 32 32 H 1.09007 * 110.71848 * 279.57279 * 18 17 16 33 33 H 1.08997 * 110.92003 * 156.30030 * 18 17 16 34 34 H 1.09001 * 110.48810 * 203.40358 * 19 18 17 35 35 H 1.09000 * 110.60171 * 80.81969 * 19 18 17 36 36 H 1.09000 * 110.03704 * 238.57437 * 20 16 7 37 37 H 1.09004 * 110.03137 * 0.02562 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1727 -1.1528 -0.0005 5 6 1.4484 -2.4196 0.1739 6 8 0.2404 -2.4147 0.3175 7 7 2.1224 -3.5866 0.1739 8 6 3.4722 -3.5972 -0.0492 9 1 3.8836 -4.2028 -0.8431 10 6 4.3146 -2.8278 0.7464 11 7 3.8368 -2.2090 1.8017 12 14 6.1253 -2.6748 0.3139 13 1 6.4095 -3.4618 -0.9129 14 1 6.4580 -1.2476 0.0741 15 1 6.9478 -3.1929 1.4366 16 6 1.4107 -4.8435 0.4189 17 6 2.0198 -5.5669 1.6377 18 6 1.9564 -7.0680 1.2581 19 6 2.2867 -7.0531 -0.2550 20 6 1.5798 -5.7881 -0.7840 21 1 -0.3633 -0.0959 1.0232 22 1 -0.3634 0.9340 -0.4286 23 1 -0.3633 -0.8383 -0.5946 24 1 2.8871 1.3630 -0.8899 25 1 1.5521 2.1336 0.0005 26 1 2.8871 1.3629 0.8900 27 1 3.2450 -1.1571 -0.1291 28 1 4.4065 -1.6149 2.3150 29 1 0.3529 -4.6456 0.5923 30 1 3.0533 -5.2552 1.7890 31 1 1.4271 -5.3732 2.5317 32 1 0.9572 -7.4678 1.4316 33 1 2.7012 -7.6409 1.8105 34 1 1.8889 -7.9439 -0.7411 35 1 3.3630 -6.9826 -0.4120 36 1 0.6041 -6.0493 -1.1938 37 1 2.1918 -5.3115 -1.5499 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078207414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:25 Heat of formation + Delta-G solvation = -27.115664 kcal Electronic energy + Delta-G solvation = -17850.160285 eV Core-core repulsion = 15206.500593 eV Total energy + Delta-G solvation = -2643.659692 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.97510 -36.92024 -34.29552 -34.05529 -31.30175 -27.93397 -27.71931 -26.92226 -26.14308 -24.53491 -20.55152 -19.97444 -19.28004 -17.58159 -16.30210 -15.64470 -15.11092 -14.60687 -14.32924 -13.65472 -13.50955 -13.16233 -12.77028 -12.66165 -12.52931 -11.72804 -11.65260 -11.44102 -11.26025 -11.05181 -10.89112 -10.67541 -10.56090 -10.46430 -10.43042 -10.34342 -10.29448 -9.96347 -9.60285 -8.82519 -8.08629 -7.80323 -7.09892 -6.27739 -4.20051 2.66525 3.12771 3.21867 3.24275 4.10211 4.72739 4.89872 5.07133 5.38805 5.43514 5.58154 5.74088 5.90442 6.10440 6.16041 6.23987 6.24573 6.33407 6.35666 6.40143 6.44898 6.52865 6.56596 6.60701 6.69435 6.75129 6.86719 6.95117 7.13881 7.15936 7.31787 7.47585 7.67579 7.77475 8.09134 8.71268 8.99785 9.70632 10.12503 10.72569 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.011632 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.472001 B = 2406.509987 C = 3479.462629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.129 4.129 3 C -0.106 4.106 4 C -0.122 4.122 5 C 0.543 3.457 6 O -0.607 6.607 7 N -0.447 5.447 8 C -0.334 4.334 9 H 0.080 0.920 10 C 0.049 3.951 11 N -0.858 5.858 12 Si 0.904 3.096 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.281 1.281 16 C 0.134 3.866 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.127 4.127 21 H 0.058 0.942 22 H 0.032 0.968 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.269 0.731 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -1.583 -2.692 3.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.131 4.131 3 C -0.163 4.163 4 C -0.143 4.143 5 C 0.336 3.664 6 O -0.495 6.495 7 N -0.166 5.166 8 C -0.463 4.463 9 H 0.098 0.902 10 C -0.158 4.158 11 N -0.493 5.493 12 Si 0.731 3.269 13 H -0.191 1.191 14 H -0.205 1.205 15 H -0.207 1.207 16 C 0.030 3.970 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.165 4.165 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.105 0.895 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.658 -1.551 -2.423 2.951 hybrid contribution 1.249 0.143 0.131 1.265 sum 0.591 -1.408 -2.291 2.754 Atomic orbital electron populations 1.20946 0.92212 1.00555 1.02259 1.22146 0.95877 0.94294 1.00781 1.20723 0.99335 0.94682 1.01521 1.22578 1.00688 0.91440 0.99552 1.18479 0.85615 0.85169 0.77106 1.90533 1.15111 1.87987 1.55849 1.43191 1.07084 1.03008 1.63300 1.19139 0.81109 1.31284 1.14735 0.90236 1.25623 0.99234 0.97270 0.93629 1.69894 1.37152 1.27466 1.14767 0.86227 0.83575 0.78392 0.78753 1.19136 1.20458 1.20663 1.21547 0.96746 0.85801 0.92955 1.22589 1.03209 0.92949 0.97184 1.22450 1.00093 0.97429 0.96088 1.22255 1.00537 0.96966 0.95646 1.22407 0.99430 0.95686 0.99002 0.92343 0.94897 0.89511 0.92339 0.92817 0.91964 0.85453 0.92071 0.90456 0.89415 0.93154 0.92549 0.92472 0.93008 0.91709 0.92986 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 8.48 36.01 0.31 -1.80 16 2 C -0.13 -2.74 6.11 -101.13 -0.62 -3.36 16 3 C -0.11 -1.83 10.06 36.00 0.36 -1.46 16 4 C -0.12 -2.96 7.39 -37.83 -0.28 -3.23 16 5 C 0.54 14.26 6.99 -12.73 -0.09 14.17 16 6 O -0.61 -16.54 12.52 5.23 0.07 -16.47 16 7 N -0.45 -11.20 2.35 -107.92 -0.25 -11.45 16 8 C -0.33 -8.29 6.88 -15.01 -0.10 -8.39 16 9 H 0.08 1.94 7.19 -52.49 -0.38 1.57 16 10 C 0.05 1.21 3.46 -17.45 -0.06 1.15 16 11 N -0.86 -22.42 11.25 55.50 0.62 -21.80 16 12 Si 0.90 19.14 29.56 -169.99 -5.03 14.11 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 C 0.13 2.98 3.29 -66.81 -0.22 2.76 16 17 C -0.12 -2.51 6.42 -25.03 -0.16 -2.67 16 18 C -0.12 -2.03 6.91 -24.70 -0.17 -2.20 16 19 C -0.12 -1.91 6.83 -25.08 -0.17 -2.08 16 20 C -0.13 -2.40 6.27 -25.61 -0.16 -2.56 16 21 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 22 H 0.03 0.56 7.95 -51.93 -0.41 0.14 16 23 H 0.09 1.94 5.98 -51.93 -0.31 1.63 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.13 3.17 5.34 -52.49 -0.28 2.89 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.08 1.83 6.95 -51.93 -0.36 1.47 16 30 H 0.09 2.05 7.02 -51.93 -0.36 1.68 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.42 6.94 -51.93 -0.36 1.06 16 LS Contribution 292.87 15.07 4.41 4.41 Total: -1.00 -27.63 292.87 -7.35 -34.99 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.81 Total: 5.90 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.37 Total: -9.69 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.37 Total: -33.25 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.07 Total: -16.47 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.63 -7.35 -34.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.873 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds