Wall clock time and date at job start Mon Mar 30 2020 17:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50697 * 119.99677 * 2 1 4 4 C 1.33119 * 120.00464 * 180.02562 * 2 1 3 5 5 C 1.46962 * 119.99676 * 352.09648 * 4 2 1 6 6 O 1.21656 * 119.99765 * 0.06985 * 5 4 2 7 7 N 1.34768 * 119.99785 * 180.02562 * 5 4 2 8 8 C 1.36820 * 120.00418 * 357.02285 * 7 5 4 9 9 H 1.07997 * 120.00051 * 235.37989 * 8 7 5 10 10 C 1.39082 * 119.99752 * 55.37511 * 8 7 5 11 11 N 1.31340 * 119.99672 * 7.55394 * 10 8 7 12 12 Si 1.86799 * 119.99768 * 187.55168 * 10 8 7 13 13 H 1.48497 * 109.47384 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46902 * 120.00305 * 12 10 8 15 15 H 1.48499 * 109.46737 * 239.99782 * 12 10 8 16 16 C 1.46506 * 120.00129 * 176.74633 * 7 5 4 17 17 C 1.54264 * 110.03481 * 237.90873 * 16 7 5 18 18 C 1.54963 * 104.15799 * 217.13587 * 17 16 7 19 19 C 1.54883 * 102.77912 * 37.88924 * 18 17 16 20 20 C 1.53877 * 110.03251 * 120.68816 * 16 7 5 21 21 H 1.09002 * 109.46980 * 264.64399 * 1 2 3 22 22 H 1.09000 * 109.47270 * 24.64720 * 1 2 3 23 23 H 1.09007 * 109.46891 * 144.64954 * 1 2 3 24 24 H 1.08998 * 109.47743 * 240.00059 * 3 2 1 25 25 H 1.09003 * 109.47432 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.46961 * 120.00061 * 3 2 1 27 27 H 1.07997 * 120.00326 * 172.09712 * 4 2 1 28 28 H 0.97002 * 120.00019 * 184.99154 * 11 10 8 29 29 H 1.09002 * 110.01221 * 359.30653 * 16 7 5 30 30 H 1.08998 * 110.48330 * 335.78226 * 17 16 7 31 31 H 1.09001 * 110.48140 * 98.42217 * 17 16 7 32 32 H 1.09007 * 110.71848 * 279.57279 * 18 17 16 33 33 H 1.08997 * 110.92003 * 156.30030 * 18 17 16 34 34 H 1.09001 * 110.48810 * 203.40358 * 19 18 17 35 35 H 1.09000 * 110.60171 * 80.81969 * 19 18 17 36 36 H 1.09000 * 110.03704 * 238.57437 * 20 16 7 37 37 H 1.09004 * 110.03137 * 0.02562 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1727 -1.1528 -0.0005 5 6 1.4484 -2.4196 0.1739 6 8 0.2404 -2.4147 0.3175 7 7 2.1224 -3.5866 0.1739 8 6 3.4722 -3.5972 -0.0492 9 1 3.8836 -4.2028 -0.8431 10 6 4.3146 -2.8278 0.7464 11 7 3.8368 -2.2090 1.8017 12 14 6.1253 -2.6748 0.3139 13 1 6.4095 -3.4618 -0.9129 14 1 6.4580 -1.2476 0.0741 15 1 6.9478 -3.1929 1.4366 16 6 1.4107 -4.8435 0.4189 17 6 2.0198 -5.5669 1.6377 18 6 1.9564 -7.0680 1.2581 19 6 2.2867 -7.0531 -0.2550 20 6 1.5798 -5.7881 -0.7840 21 1 -0.3633 -0.0959 1.0232 22 1 -0.3634 0.9340 -0.4286 23 1 -0.3633 -0.8383 -0.5946 24 1 2.8871 1.3630 -0.8899 25 1 1.5521 2.1336 0.0005 26 1 2.8871 1.3629 0.8900 27 1 3.2450 -1.1571 -0.1291 28 1 4.4065 -1.6149 2.3150 29 1 0.3529 -4.6456 0.5923 30 1 3.0533 -5.2552 1.7890 31 1 1.4271 -5.3732 2.5317 32 1 0.9572 -7.4678 1.4316 33 1 2.7012 -7.6409 1.8105 34 1 1.8889 -7.9439 -0.7411 35 1 3.3630 -6.9826 -0.4120 36 1 0.6041 -6.0493 -1.1938 37 1 2.1918 -5.3115 -1.5499 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078207414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:24 Heat of formation + Delta-G solvation = -41.292953 kcal Electronic energy + Delta-G solvation = -17850.775058 eV Core-core repulsion = 15206.500593 eV Total energy + Delta-G solvation = -2644.274465 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82539 -38.60800 -36.00649 -35.90423 -33.18169 -29.48039 -29.38778 -28.46284 -27.88254 -26.39989 -22.32550 -21.42237 -21.08103 -19.31951 -18.22442 -17.38177 -17.00969 -16.16012 -16.01870 -15.47396 -15.14215 -14.81369 -14.43414 -14.31796 -14.09346 -13.39495 -13.27380 -13.10403 -12.98615 -12.79831 -12.58211 -12.34004 -12.20645 -12.09627 -11.99085 -11.88114 -11.83721 -11.40418 -11.31038 -10.69488 -10.01293 -9.62897 -8.99235 -8.16894 -6.16241 0.85784 1.44579 1.47715 1.58385 2.32448 2.81609 3.07788 3.22956 3.86519 3.92583 4.15394 4.22992 4.31047 4.58836 4.65542 4.70005 4.76616 4.78499 4.82197 4.91056 4.94674 5.01956 5.06603 5.07611 5.15668 5.16006 5.23822 5.38885 5.43005 5.50532 5.55988 5.61762 5.91433 6.05196 6.19660 6.77088 7.08283 7.75558 8.19322 8.83480 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.011632 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.472001 B = 2406.509987 C = 3479.462629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.110 4.110 3 C -0.103 4.103 4 C -0.160 4.160 5 C 0.522 3.478 6 O -0.634 6.634 7 N -0.453 5.453 8 C -0.343 4.343 9 H 0.081 0.919 10 C 0.017 3.983 11 N -0.888 5.888 12 Si 0.967 3.033 13 H -0.259 1.259 14 H -0.274 1.274 15 H -0.283 1.283 16 C 0.121 3.879 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.121 4.121 21 H 0.046 0.954 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.269 0.731 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -1.709 -3.436 3.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.160 4.160 4 C -0.181 4.181 5 C 0.316 3.684 6 O -0.525 6.525 7 N -0.172 5.172 8 C -0.472 4.472 9 H 0.099 0.901 10 C -0.187 4.187 11 N -0.524 5.524 12 Si 0.791 3.209 13 H -0.182 1.182 14 H -0.199 1.199 15 H -0.209 1.209 16 C 0.017 3.983 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.159 4.159 21 H 0.065 0.935 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.135 0.865 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.120 -1.702 -3.178 3.607 hybrid contribution 0.925 0.234 0.378 1.026 sum 1.045 -1.467 -2.800 3.329 Atomic orbital electron populations 1.20881 0.91690 1.01694 1.01338 1.22707 0.96609 0.95316 0.96607 1.20789 0.99857 0.93126 1.02200 1.22450 1.00224 0.91745 1.03652 1.19003 0.85693 0.86364 0.77333 1.90496 1.15917 1.88504 1.57566 1.43414 1.07457 1.03657 1.62627 1.19294 0.81175 1.31661 1.15066 0.90136 1.26269 1.02830 0.96431 0.93149 1.70017 1.38589 1.28040 1.15744 0.85266 0.78558 0.78519 0.78530 1.18249 1.19909 1.20866 1.21781 0.95312 0.85809 0.95380 1.22490 1.00743 0.96236 0.96163 1.22418 1.01968 0.94113 0.96332 1.22230 1.00142 0.96737 0.95435 1.22343 1.00414 0.96070 0.97102 0.93498 0.90787 0.91927 0.90675 0.89701 0.92057 0.86467 0.92131 0.92766 0.92354 0.94338 0.90577 0.90527 0.89516 0.92108 0.91473 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.01 8.48 71.24 0.60 -3.40 16 2 C -0.11 -4.63 6.11 -17.60 -0.11 -4.74 16 3 C -0.10 -3.30 10.06 71.23 0.72 -2.59 16 4 C -0.16 -7.92 7.39 23.41 0.17 -7.75 16 5 C 0.52 28.51 6.99 86.53 0.60 29.11 16 6 O -0.63 -36.16 12.52 -4.21 -0.05 -36.22 16 7 N -0.45 -23.55 2.35 -613.57 -1.44 -24.99 16 8 C -0.34 -17.42 6.88 84.12 0.58 -16.85 16 9 H 0.08 3.99 7.19 -2.91 -0.02 3.97 16 10 C 0.02 0.86 3.46 84.97 0.29 1.15 16 11 N -0.89 -47.45 11.25 21.69 0.24 -47.20 16 12 Si 0.97 39.19 29.56 68.60 2.03 41.22 16 13 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 14 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 16 C 0.12 5.55 3.29 45.71 0.15 5.70 16 17 C -0.12 -4.97 6.42 31.69 0.20 -4.77 16 18 C -0.11 -3.44 6.91 31.91 0.22 -3.22 16 19 C -0.11 -3.29 6.83 31.67 0.22 -3.07 16 20 C -0.12 -4.53 6.27 31.32 0.20 -4.33 16 21 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 22 H 0.07 2.33 7.95 -2.39 -0.02 2.31 16 23 H 0.06 2.85 5.98 -2.38 -0.01 2.84 16 24 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.08 2.19 7.87 -2.39 -0.02 2.17 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.12 5.95 5.34 -2.91 -0.02 5.94 16 28 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.05 2.69 6.95 -2.39 -0.02 2.67 16 30 H 0.06 2.79 7.02 -2.39 -0.02 2.78 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.05 2.22 6.94 -2.39 -0.02 2.21 16 Total: -1.00 -61.92 292.87 5.66 -56.25 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 1.04 Total: 25.69 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 3.85 Total: -14.75 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.20 Total: -72.20 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -0.05 Total: -36.22 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -61.92 5.66 -56.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.960 kcal (2) G-P(sol) polarization free energy of solvation -61.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds