Wall clock time and date at job start Mon Mar 30 2020 17:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46998 * 2 1 4 4 H 1.09000 * 109.47433 * 305.84906 * 3 2 1 5 5 C 1.50698 * 109.46813 * 185.84482 * 3 2 1 6 6 H 1.08001 * 119.99853 * 243.40565 * 5 3 2 7 7 C 1.37877 * 120.00042 * 63.40478 * 5 3 2 8 8 N 1.31514 * 120.00044 * 196.04197 * 7 5 3 9 9 Si 1.86799 * 119.99722 * 16.04620 * 7 5 3 10 10 H 1.48493 * 109.47421 * 92.75237 * 9 7 5 11 11 H 1.48504 * 109.46943 * 212.74609 * 9 7 5 12 12 H 1.48498 * 109.47455 * 332.74495 * 9 7 5 13 13 N 1.46899 * 109.47125 * 65.84860 * 3 2 1 14 14 C 1.46903 * 110.99933 * 258.57149 * 13 3 2 15 15 C 1.50699 * 109.47438 * 175.30347 * 14 13 3 16 16 C 1.41383 * 126.57723 * 259.97828 * 15 14 13 17 17 C 1.34513 * 106.83943 * 180.25838 * 16 15 14 18 18 C 1.50705 * 125.78995 * 179.76728 * 17 16 15 19 19 O 1.34300 * 108.42208 * 359.63088 * 17 16 15 20 20 C 1.34311 * 109.47550 * 0.38115 * 19 17 16 21 21 C 1.50695 * 125.78918 * 179.79424 * 20 19 17 22 22 H 1.08998 * 109.47541 * 175.84117 * 1 2 3 23 23 H 1.09003 * 109.47063 * 295.84588 * 1 2 3 24 24 H 1.09002 * 109.47154 * 55.84250 * 1 2 3 25 25 H 1.08995 * 109.46711 * 239.99771 * 2 1 3 26 26 H 1.08996 * 109.46458 * 119.99813 * 2 1 3 27 27 H 0.97002 * 120.00037 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00210 * 134.62263 * 13 3 2 29 29 H 1.08997 * 109.47145 * 55.30130 * 14 13 3 30 30 H 1.09008 * 109.47063 * 295.30460 * 14 13 3 31 31 H 1.07999 * 126.58045 * 359.97438 * 16 15 14 32 32 H 1.09005 * 109.46825 * 90.00028 * 18 17 16 33 33 H 1.08992 * 109.47123 * 210.00007 * 18 17 16 34 34 H 1.08993 * 109.47119 * 330.00502 * 18 17 16 35 35 H 1.08999 * 109.47144 * 269.96625 * 21 20 19 36 36 H 1.09000 * 109.47722 * 29.96853 * 21 20 19 37 37 H 1.09000 * 109.46965 * 149.97105 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 6 3.5400 1.4449 -0.1447 6 1 4.1585 1.8358 0.6497 7 6 4.1228 0.9480 -1.2912 8 7 5.4048 0.6547 -1.3032 9 14 3.0915 0.6914 -2.8274 10 1 3.1666 1.9034 -3.6821 11 1 3.6090 -0.4787 -3.5813 12 1 1.6792 0.4455 -2.4401 13 7 1.6690 2.0930 1.2637 14 6 0.4999 2.9642 1.0840 15 6 0.0792 3.5223 2.4191 16 6 -0.9801 3.0561 3.2312 17 6 -1.0075 3.8401 4.3239 18 6 -1.9780 3.7200 5.4706 19 8 -0.0214 4.7460 4.2211 20 6 0.6390 4.5600 3.0665 21 6 1.8090 5.3753 2.5792 22 1 -0.3634 -1.0249 -0.0745 23 1 -0.3633 0.4480 0.9249 24 1 -0.3633 0.5770 -0.8504 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8148 0.3048 -2.1097 28 1 2.4474 2.6073 1.6479 29 1 -0.3204 2.3878 0.6564 30 1 0.7570 3.7834 0.4124 31 1 -1.6433 2.2320 3.0135 32 1 -1.5681 3.0479 6.2246 33 1 -2.1430 4.7031 5.9114 34 1 -2.9246 3.3220 5.1053 35 1 1.4452 6.2157 1.9881 36 1 2.3725 5.7492 3.4340 37 1 2.4556 4.7506 1.9630 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135039612.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:44:25 Heat of formation + Delta-G solvation = 1.700226 kcal Electronic energy + Delta-G solvation = -17029.379809 eV Core-core repulsion = 14386.969668 eV Total energy + Delta-G solvation = -2642.410141 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.35524 -36.73063 -33.83689 -32.83275 -32.04864 -30.75688 -29.48098 -27.64985 -24.95422 -23.60330 -22.33602 -21.10310 -19.59557 -18.93248 -16.94382 -16.11693 -16.05977 -15.30286 -14.15697 -14.02245 -13.85114 -13.34841 -13.27817 -12.96617 -12.85586 -12.66472 -12.54771 -12.28741 -12.17135 -11.94198 -11.73382 -11.47347 -10.96232 -10.80250 -10.68430 -10.22945 -9.82342 -9.48810 -9.24254 -9.12888 -8.43817 -7.93158 -7.38134 -6.14455 -4.09451 1.93218 2.84960 3.11957 3.26611 3.36669 3.40585 4.39958 4.80222 5.07068 5.15221 5.18147 5.28059 5.40042 5.48262 5.56961 5.59424 5.64104 5.80790 5.93710 6.06739 6.10093 6.14591 6.18802 6.29795 6.38919 6.54161 6.69909 6.78367 6.86064 7.05613 7.08449 7.43050 7.47336 7.66325 8.00438 8.37940 8.61601 8.94424 9.52032 10.98355 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034644 B = 0.006185 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.031910 B = 4526.151247 C = 4993.541648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C 0.191 3.809 4 H 0.004 0.996 5 C -0.534 4.534 6 H 0.075 0.925 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.250 1.250 13 N -0.674 5.674 14 C 0.122 3.878 15 C -0.155 4.155 16 C -0.189 4.189 17 C -0.034 4.034 18 C -0.067 4.067 19 O -0.179 6.179 20 C -0.018 4.018 21 C -0.072 4.072 22 H 0.034 0.966 23 H 0.055 0.945 24 H 0.037 0.963 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.264 0.736 28 H 0.337 0.663 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.143 0.857 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.966 6.534 8.153 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C 0.082 3.918 4 H 0.021 0.979 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.690 3.310 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.174 1.174 13 N -0.305 5.305 14 C -0.007 4.007 15 C -0.157 4.157 16 C -0.208 4.208 17 C -0.083 4.083 18 C -0.124 4.124 19 O -0.077 6.077 20 C -0.068 4.068 21 C -0.129 4.129 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.156 0.844 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.161 0.839 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.111 6.133 8.463 16.767 hybrid contribution -0.020 0.322 -1.531 1.564 sum -13.131 6.456 6.933 16.191 Atomic orbital electron populations 1.21883 0.98704 0.99416 1.00623 1.21841 0.92669 0.99341 1.00743 1.19470 0.95434 0.90848 0.86019 0.97860 1.21225 0.89460 1.42599 1.03921 0.90697 1.24890 0.94745 0.93998 0.98788 1.69994 1.11719 1.42512 1.28393 0.87201 0.82431 0.77816 0.83597 1.20835 1.21309 1.17392 1.60575 1.07452 1.33051 1.29460 1.20390 0.95580 0.94615 0.90139 1.20271 0.98383 0.97437 0.99569 1.21404 1.01823 1.02485 0.95121 1.22230 0.93529 0.92967 0.99598 1.20208 0.95437 1.02981 0.93753 1.83894 1.37836 1.48916 1.37066 1.22202 0.98367 1.00491 0.85761 1.20301 0.92487 0.98898 1.01212 0.94693 0.92565 0.94427 0.93245 0.92285 0.92648 0.84424 0.90616 0.95342 0.83905 0.90471 0.91062 0.89721 0.90567 0.90811 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.74 37.16 0.32 -2.47 16 2 C -0.11 -2.41 4.85 -26.73 -0.13 -2.54 16 3 C 0.19 4.48 1.75 -68.87 -0.12 4.36 16 4 H 0.00 0.09 6.35 -51.93 -0.33 -0.24 16 5 C -0.53 -14.69 9.03 -34.44 -0.31 -15.01 16 6 H 0.08 2.22 7.67 -52.49 -0.40 1.82 16 7 C 0.08 2.24 5.31 -17.82 -0.09 2.14 16 8 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 9 Si 0.86 21.04 25.76 -169.99 -4.38 16.67 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.25 -5.78 5.49 56.52 0.31 -5.47 16 13 N -0.67 -13.98 6.07 -109.22 -0.66 -14.64 16 14 C 0.12 2.19 5.04 -4.97 -0.03 2.17 16 15 C -0.15 -2.59 5.72 -104.74 -0.60 -3.19 16 16 C -0.19 -2.87 10.77 -39.70 -0.43 -3.30 16 17 C -0.03 -0.47 7.32 -35.62 -0.26 -0.73 16 18 C -0.07 -0.62 10.42 36.01 0.38 -0.25 16 19 O -0.18 -2.79 10.65 5.69 0.06 -2.73 16 20 C -0.02 -0.28 7.32 -35.63 -0.26 -0.54 16 21 C -0.07 -0.95 10.20 36.00 0.37 -0.58 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 1.01 6.66 -51.93 -0.35 0.67 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 1.16 4.88 -51.93 -0.25 0.90 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.34 7.10 7.08 -39.29 -0.28 6.82 16 29 H 0.08 1.34 6.02 -51.93 -0.31 1.03 16 30 H 0.03 0.51 8.13 -51.92 -0.42 0.09 16 31 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.29 6.99 -51.93 -0.36 0.93 16 LS Contribution 297.89 15.07 4.49 4.49 Total: -1.00 -30.57 297.89 -6.62 -37.19 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.74 Total: 4.94 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -1.16 Total: -19.92 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.11 Total: -40.64 kcal Atomic # 8 Polarization: -2.79 SS G_CDS: 0.06 Total: -2.73 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.38 Total: 16.67 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.57 -6.62 -37.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135039612.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.889 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds