Wall clock time and date at job start Mon Mar 30 2020 17:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46998 * 2 1 4 4 H 1.09000 * 109.47433 * 305.84906 * 3 2 1 5 5 C 1.50698 * 109.46813 * 185.84482 * 3 2 1 6 6 H 1.08001 * 119.99853 * 243.40565 * 5 3 2 7 7 C 1.37877 * 120.00042 * 63.40478 * 5 3 2 8 8 N 1.31514 * 120.00044 * 196.04197 * 7 5 3 9 9 Si 1.86799 * 119.99722 * 16.04620 * 7 5 3 10 10 H 1.48493 * 109.47421 * 92.75237 * 9 7 5 11 11 H 1.48504 * 109.46943 * 212.74609 * 9 7 5 12 12 H 1.48498 * 109.47455 * 332.74495 * 9 7 5 13 13 N 1.46899 * 109.47125 * 65.84860 * 3 2 1 14 14 C 1.46903 * 110.99933 * 258.57149 * 13 3 2 15 15 C 1.50699 * 109.47438 * 175.30347 * 14 13 3 16 16 C 1.41383 * 126.57723 * 259.97828 * 15 14 13 17 17 C 1.34513 * 106.83943 * 180.25838 * 16 15 14 18 18 C 1.50705 * 125.78995 * 179.76728 * 17 16 15 19 19 O 1.34300 * 108.42208 * 359.63088 * 17 16 15 20 20 C 1.34311 * 109.47550 * 0.38115 * 19 17 16 21 21 C 1.50695 * 125.78918 * 179.79424 * 20 19 17 22 22 H 1.08998 * 109.47541 * 175.84117 * 1 2 3 23 23 H 1.09003 * 109.47063 * 295.84588 * 1 2 3 24 24 H 1.09002 * 109.47154 * 55.84250 * 1 2 3 25 25 H 1.08995 * 109.46711 * 239.99771 * 2 1 3 26 26 H 1.08996 * 109.46458 * 119.99813 * 2 1 3 27 27 H 0.97002 * 120.00037 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00210 * 134.62263 * 13 3 2 29 29 H 1.08997 * 109.47145 * 55.30130 * 14 13 3 30 30 H 1.09008 * 109.47063 * 295.30460 * 14 13 3 31 31 H 1.07999 * 126.58045 * 359.97438 * 16 15 14 32 32 H 1.09005 * 109.46825 * 90.00028 * 18 17 16 33 33 H 1.08992 * 109.47123 * 210.00007 * 18 17 16 34 34 H 1.08993 * 109.47119 * 330.00502 * 18 17 16 35 35 H 1.08999 * 109.47144 * 269.96625 * 21 20 19 36 36 H 1.09000 * 109.47722 * 29.96853 * 21 20 19 37 37 H 1.09000 * 109.46965 * 149.97105 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 6 3.5400 1.4449 -0.1447 6 1 4.1585 1.8358 0.6497 7 6 4.1228 0.9480 -1.2912 8 7 5.4048 0.6547 -1.3032 9 14 3.0915 0.6914 -2.8274 10 1 3.1666 1.9034 -3.6821 11 1 3.6090 -0.4787 -3.5813 12 1 1.6792 0.4455 -2.4401 13 7 1.6690 2.0930 1.2637 14 6 0.4999 2.9642 1.0840 15 6 0.0792 3.5223 2.4191 16 6 -0.9801 3.0561 3.2312 17 6 -1.0075 3.8401 4.3239 18 6 -1.9780 3.7200 5.4706 19 8 -0.0214 4.7460 4.2211 20 6 0.6390 4.5600 3.0665 21 6 1.8090 5.3753 2.5792 22 1 -0.3634 -1.0249 -0.0745 23 1 -0.3633 0.4480 0.9249 24 1 -0.3633 0.5770 -0.8504 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8148 0.3048 -2.1097 28 1 2.4474 2.6073 1.6479 29 1 -0.3204 2.3878 0.6564 30 1 0.7570 3.7834 0.4124 31 1 -1.6433 2.2320 3.0135 32 1 -1.5681 3.0479 6.2246 33 1 -2.1430 4.7031 5.9114 34 1 -2.9246 3.3220 5.1053 35 1 1.4452 6.2157 1.9881 36 1 2.3725 5.7492 3.4340 37 1 2.4556 4.7506 1.9630 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135039612.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:44:25 Heat of formation + Delta-G solvation = -18.196911 kcal Electronic energy + Delta-G solvation = -17030.242614 eV Core-core repulsion = 14386.969668 eV Total energy + Delta-G solvation = -2643.272946 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.50540 -38.42945 -35.35473 -34.05101 -33.82227 -32.26896 -30.47079 -29.38547 -26.40064 -24.90751 -24.05279 -22.27901 -21.40657 -20.21277 -18.89715 -17.42801 -17.25035 -16.96175 -15.83366 -15.63996 -15.17496 -14.84429 -14.51008 -14.37441 -14.13851 -13.81201 -13.71480 -13.59139 -13.41987 -13.26066 -13.14179 -12.93807 -12.71351 -12.54734 -12.22106 -11.88342 -11.66800 -11.24074 -11.09699 -10.62066 -10.51332 -9.14857 -8.97671 -8.33260 -6.32653 0.80082 1.33485 1.37686 1.48257 1.65470 2.05726 2.34536 3.01236 3.68687 3.81574 3.99687 4.06368 4.37077 4.45837 4.50907 4.51890 4.58535 4.62702 4.64997 4.71058 4.75729 4.83683 4.90391 5.01263 5.04036 5.20220 5.23475 5.29937 5.41013 5.43965 5.55889 5.68785 5.80648 6.01930 6.28355 6.49475 6.66755 6.85679 7.33058 8.83112 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034644 B = 0.006185 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.031910 B = 4526.151247 C = 4993.541648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.197 3.803 4 H 0.005 0.995 5 C -0.539 4.539 6 H 0.037 0.963 7 C 0.025 3.975 8 N -0.938 5.938 9 Si 0.926 3.074 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.226 1.226 13 N -0.675 5.675 14 C 0.128 3.872 15 C -0.178 4.178 16 C -0.210 4.210 17 C -0.029 4.029 18 C -0.067 4.067 19 O -0.188 6.188 20 C -0.028 4.028 21 C -0.072 4.072 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.266 0.734 28 H 0.332 0.668 29 H 0.082 0.918 30 H 0.028 0.972 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 6.723 8.313 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C 0.088 3.912 4 H 0.023 0.977 5 C -0.577 4.577 6 H 0.055 0.945 7 C -0.174 4.174 8 N -0.577 5.577 9 Si 0.749 3.251 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.149 1.149 13 N -0.306 5.306 14 C 0.000 4.000 15 C -0.180 4.180 16 C -0.229 4.229 17 C -0.079 4.079 18 C -0.123 4.123 19 O -0.086 6.086 20 C -0.078 4.078 21 C -0.128 4.128 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.149 0.851 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.174 0.826 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.847 6.332 8.639 19.128 hybrid contribution 0.860 0.307 -1.447 1.711 sum -14.987 6.639 7.193 17.900 Atomic orbital electron populations 1.21774 0.95409 1.01161 1.01321 1.21768 0.95596 0.97847 0.99540 1.19341 0.92547 0.92099 0.87238 0.97745 1.21518 0.91658 1.41643 1.02862 0.94522 1.25730 0.95823 0.93839 1.02054 1.70124 1.13828 1.44322 1.29430 0.86188 0.81886 0.77766 0.79219 1.20322 1.21195 1.14908 1.60576 1.08075 1.33987 1.27919 1.20334 0.94301 0.94151 0.91254 1.20280 0.99729 0.98445 0.99499 1.21635 1.02127 1.03583 0.95583 1.23079 0.92974 0.91526 1.00289 1.20434 0.95102 1.04283 0.92468 1.83914 1.38339 1.49520 1.36858 1.22565 0.98797 1.00638 0.85835 1.20348 0.91786 0.98897 1.01776 0.92475 0.91969 0.93607 0.94287 0.93773 0.92507 0.85067 0.90002 0.95423 0.82589 0.89273 0.89690 0.87598 0.88769 0.89372 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 8.74 71.98 0.63 -4.18 16 2 C -0.11 -4.74 4.85 30.60 0.15 -4.59 16 3 C 0.20 9.16 1.75 44.17 0.08 9.24 16 4 H 0.00 0.23 6.35 -2.39 -0.02 0.21 16 5 C -0.54 -30.38 9.03 25.60 0.23 -30.15 16 6 H 0.04 2.29 7.67 -2.91 -0.02 2.26 16 7 C 0.02 1.41 5.31 84.65 0.45 1.86 16 8 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 9 Si 0.93 43.20 25.76 68.60 1.77 44.97 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.23 -9.62 5.49 99.48 0.55 -9.08 16 13 N -0.67 -27.95 6.07 -499.46 -3.03 -30.98 16 14 C 0.13 4.49 5.04 85.56 0.43 4.92 16 15 C -0.18 -5.77 5.72 -19.94 -0.11 -5.88 16 16 C -0.21 -6.02 10.77 22.19 0.24 -5.78 16 17 C -0.03 -0.75 7.32 24.83 0.18 -0.57 16 18 C -0.07 -1.02 10.42 71.24 0.74 -0.28 16 19 O -0.19 -5.58 10.65 -2.54 -0.03 -5.61 16 20 C -0.03 -0.86 7.32 24.83 0.18 -0.68 16 21 C -0.07 -1.83 10.20 71.23 0.73 -1.11 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.06 2.07 6.66 -2.39 -0.02 2.05 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.04 1.75 4.88 -2.39 -0.01 1.74 16 26 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.33 14.35 7.08 -89.69 -0.63 13.71 16 29 H 0.08 2.74 6.02 -2.39 -0.01 2.73 16 30 H 0.03 0.97 8.13 -2.38 -0.02 0.95 16 31 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 2.20 6.99 -2.39 -0.02 2.18 16 Total: -1.00 -66.41 297.89 3.19 -63.22 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.26 Total: 23.32 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 3.92 Total: -37.18 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -2.73 Total: -88.71 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.03 Total: -5.61 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.77 Total: 44.97 kcal Total: -66.41 3.19 -63.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135039612.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.019 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds