Wall clock time and date at job start Mon Mar 30 2020 17:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99823 * 2 1 4 4 H 1.48503 * 109.46949 * 269.99968 * 3 2 1 5 5 H 1.48503 * 109.47149 * 30.00148 * 3 2 1 6 6 H 1.48505 * 109.46934 * 150.00323 * 3 2 1 7 7 C 1.37872 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47070 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47175 * 179.97438 * 10 9 7 12 12 C 1.48813 * 111.18681 * 52.66416 * 11 10 9 13 13 C 1.54933 * 103.35205 * 159.50572 * 12 11 10 14 14 C 1.54594 * 102.91997 * 322.69117 * 13 12 11 15 15 H 1.09005 * 110.30718 * 263.04287 * 14 13 12 16 16 C 1.50696 * 110.30989 * 140.87684 * 14 13 12 17 17 N 1.33317 * 126.54637 * 303.96873 * 16 14 13 18 18 N 1.29002 * 107.35141 * 179.83958 * 17 16 14 19 19 N 1.28773 * 108.72644 * 0.42858 * 18 17 16 20 20 H 0.97003 * 125.44942 * 179.72925 * 19 18 17 21 21 N 1.28887 * 109.10446 * 359.72981 * 19 18 17 22 22 C 1.47905 * 111.00050 * 169.99751 * 11 10 9 23 23 H 0.97004 * 120.00381 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47285 * 60.00303 * 9 7 2 25 25 H 1.08995 * 109.47244 * 299.99870 * 9 7 2 26 26 H 1.09000 * 109.47560 * 59.99639 * 10 9 7 27 27 H 1.09011 * 109.47014 * 299.99742 * 10 9 7 28 28 H 1.08998 * 110.51915 * 41.07024 * 12 11 10 29 29 H 1.09004 * 110.69711 * 278.02347 * 12 11 10 30 30 H 1.08999 * 110.72416 * 204.32980 * 13 12 11 31 31 H 1.08999 * 110.72531 * 81.04521 * 13 12 11 32 32 H 1.09002 * 109.91668 * 94.80258 * 22 11 10 33 33 H 1.09002 * 109.91761 * 333.70433 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5108 -4.9342 0.0001 12 6 0.5127 -4.9796 -1.1028 13 6 0.2459 -6.4952 -1.2818 14 6 1.6408 -7.1212 -1.0527 15 1 2.1343 -7.3051 -2.0071 16 6 1.5167 -8.4036 -0.2711 17 7 0.9367 -8.5545 0.9198 18 7 1.0371 -9.7997 1.2416 19 7 1.6627 -10.4202 0.3025 20 1 1.8741 -11.3669 0.2974 21 7 1.9632 -9.5823 -0.6295 22 6 2.4233 -6.0733 -0.2397 23 1 -0.4851 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 0.9307 -4.5522 -2.0142 29 1 -0.4014 -4.4592 -0.8168 30 1 -0.1114 -6.7076 -2.2895 31 1 -0.4643 -6.8526 -0.5363 32 1 2.7401 -6.5018 0.7111 33 1 3.2936 -5.7392 -0.8046 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308035816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:48 Heat of formation + Delta-G solvation = 121.904459 kcal Electronic energy + Delta-G solvation = -16390.235812 eV Core-core repulsion = 13681.790525 eV Total energy + Delta-G solvation = -2708.445287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.53747 -38.74084 -34.65385 -33.94651 -32.97888 -31.48340 -28.90592 -28.39183 -24.64289 -24.59284 -23.20264 -21.83737 -20.59188 -19.66190 -18.86569 -17.10546 -16.40965 -16.06208 -15.10591 -14.48210 -14.22412 -13.83947 -13.69227 -12.70293 -12.45063 -12.23395 -11.94566 -11.85226 -11.82924 -11.32252 -11.13420 -10.99655 -10.94090 -10.78138 -10.57534 -10.49751 -10.21129 -9.87955 -9.30583 -9.09817 -8.31863 -7.76093 -5.96854 -3.99155 1.04854 2.05146 2.21042 3.34173 3.40542 3.43996 3.75607 4.22001 4.44751 4.62871 4.79754 4.92883 5.17261 5.39174 5.49085 5.52278 5.58729 5.76687 5.90917 5.98185 6.07256 6.25054 6.31353 6.39910 6.44324 6.55101 6.96491 7.47825 7.51704 7.76370 7.91076 8.09762 8.18544 8.46145 9.07845 9.64435 11.14514 Molecular weight = 237.13amu Principal moments of inertia in cm(-1) A = 0.068026 B = 0.004285 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.505648 B = 6532.238703 C = 6605.746272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.053 3.947 11 N -0.512 5.512 12 C 0.043 3.957 13 C -0.114 4.114 14 C -0.006 4.006 15 H 0.103 0.897 16 C 0.193 3.807 17 N -0.257 5.257 18 N -0.058 5.058 19 N -0.238 5.238 20 H 0.471 0.529 21 N -0.308 5.308 22 C 0.049 3.951 23 H 0.260 0.740 24 H 0.019 0.981 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.022 0.978 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -19.401 -3.172 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.074 4.074 11 N -0.236 5.236 12 C -0.085 4.085 13 C -0.153 4.153 14 C -0.028 4.028 15 H 0.121 0.879 16 C -0.090 4.090 17 N -0.130 5.130 18 N -0.053 5.053 19 N -0.083 5.083 20 H 0.324 0.676 21 N -0.159 5.159 22 C -0.081 4.081 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.456 -19.648 -2.147 19.917 hybrid contribution 1.232 0.608 -1.136 1.783 sum 3.688 -19.040 -3.283 19.670 Atomic orbital electron populations 1.69969 1.06004 1.26558 1.50698 1.24985 0.94825 0.99147 0.95326 0.86604 0.79875 0.83548 0.78015 1.20749 1.21213 1.19892 1.21190 0.92989 0.91058 1.50814 0.92787 1.19157 0.94019 0.90266 0.97929 1.22533 0.97109 0.88582 0.99154 1.64961 1.13165 1.02943 1.42535 1.23208 0.97878 0.94008 0.93387 1.22632 0.94573 0.96092 1.02028 1.20508 0.99414 0.86131 0.96765 0.87927 1.25602 0.96553 0.94413 0.92419 1.75989 1.18613 1.05999 1.12365 1.79010 1.11110 1.00950 1.14251 1.47779 1.36470 1.13495 1.10557 0.67551 1.74715 1.23484 1.01018 1.16729 1.22848 0.94765 0.91548 0.98942 0.93010 0.96287 0.95604 0.91833 0.95930 0.93445 0.89041 0.90712 0.89933 0.90698 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.64 -27.88 -0.13 0.48 16 10 C 0.05 1.13 4.97 -3.82 -0.02 1.11 16 11 N -0.51 -9.46 5.40 -230.20 -1.24 -10.71 16 12 C 0.04 0.72 5.12 -1.74 -0.01 0.71 16 13 C -0.11 -1.52 6.60 -24.87 -0.16 -1.69 16 14 C -0.01 -0.08 3.52 -90.42 -0.32 -0.39 16 15 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.19 2.56 6.63 -156.63 -1.04 1.52 16 17 N -0.26 -3.79 12.30 32.44 0.40 -3.39 16 18 N -0.06 -0.71 13.48 60.35 0.81 0.11 16 19 N -0.24 -2.15 7.91 60.34 0.48 -1.67 16 20 H 0.47 1.84 8.96 -340.53 -3.05 -1.21 16 21 N -0.31 -3.51 12.36 32.46 0.40 -3.11 16 22 C 0.05 0.74 6.34 -2.75 -0.02 0.72 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.51 6.82 -51.93 -0.35 0.15 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.02 0.47 7.81 -51.92 -0.41 0.06 16 28 H 0.05 0.79 8.00 -51.93 -0.42 0.37 16 29 H 0.09 1.66 7.69 -51.93 -0.40 1.26 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.18 7.69 -51.93 -0.40 0.78 16 32 H 0.07 1.18 7.68 -51.93 -0.40 0.78 16 33 H 0.05 0.72 7.57 -51.93 -0.39 0.32 16 LS Contribution 278.83 15.07 4.20 4.20 Total: -1.00 -32.70 278.83 -8.39 -41.09 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -7.05 Total: -5.98 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -2.11 Total: -11.08 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 1.58 Total: -44.92 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.70 -8.39 -41.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308035816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.999 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds