Wall clock time and date at job start Mon Mar 30 2020 17:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99823 * 2 1 4 4 H 1.48503 * 109.46949 * 269.99968 * 3 2 1 5 5 H 1.48503 * 109.47149 * 30.00148 * 3 2 1 6 6 H 1.48505 * 109.46934 * 150.00323 * 3 2 1 7 7 C 1.37872 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47070 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47175 * 179.97438 * 10 9 7 12 12 C 1.48813 * 111.18681 * 52.66416 * 11 10 9 13 13 C 1.54933 * 103.35205 * 159.50572 * 12 11 10 14 14 C 1.54594 * 102.91997 * 322.69117 * 13 12 11 15 15 H 1.09005 * 110.30718 * 263.04287 * 14 13 12 16 16 C 1.50696 * 110.30989 * 140.87684 * 14 13 12 17 17 N 1.33317 * 126.54637 * 303.96873 * 16 14 13 18 18 N 1.29002 * 107.35141 * 179.83958 * 17 16 14 19 19 N 1.28773 * 108.72644 * 0.42858 * 18 17 16 20 20 H 0.97003 * 125.44942 * 179.72925 * 19 18 17 21 21 N 1.28887 * 109.10446 * 359.72981 * 19 18 17 22 22 C 1.47905 * 111.00050 * 169.99751 * 11 10 9 23 23 H 0.97004 * 120.00381 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47285 * 60.00303 * 9 7 2 25 25 H 1.08995 * 109.47244 * 299.99870 * 9 7 2 26 26 H 1.09000 * 109.47560 * 59.99639 * 10 9 7 27 27 H 1.09011 * 109.47014 * 299.99742 * 10 9 7 28 28 H 1.08998 * 110.51915 * 41.07024 * 12 11 10 29 29 H 1.09004 * 110.69711 * 278.02347 * 12 11 10 30 30 H 1.08999 * 110.72416 * 204.32980 * 13 12 11 31 31 H 1.08999 * 110.72531 * 81.04521 * 13 12 11 32 32 H 1.09002 * 109.91668 * 94.80258 * 22 11 10 33 33 H 1.09002 * 109.91761 * 333.70433 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5108 -4.9342 0.0001 12 6 0.5127 -4.9796 -1.1028 13 6 0.2459 -6.4952 -1.2818 14 6 1.6408 -7.1212 -1.0527 15 1 2.1343 -7.3051 -2.0071 16 6 1.5167 -8.4036 -0.2711 17 7 0.9367 -8.5545 0.9198 18 7 1.0371 -9.7997 1.2416 19 7 1.6627 -10.4202 0.3025 20 1 1.8741 -11.3669 0.2974 21 7 1.9632 -9.5823 -0.6295 22 6 2.4233 -6.0733 -0.2397 23 1 -0.4851 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 0.9307 -4.5522 -2.0142 29 1 -0.4014 -4.4592 -0.8168 30 1 -0.1114 -6.7076 -2.2895 31 1 -0.4643 -6.8526 -0.5363 32 1 2.7401 -6.5018 0.7111 33 1 3.2936 -5.7392 -0.8046 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308035816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:47 Heat of formation + Delta-G solvation = 96.884849 kcal Electronic energy + Delta-G solvation = -16391.320743 eV Core-core repulsion = 13681.790525 eV Total energy + Delta-G solvation = -2709.530219 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.128 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.45700 -40.04499 -36.04877 -35.13111 -34.55399 -32.96695 -30.44434 -29.80770 -26.45597 -25.53976 -24.36361 -23.47966 -21.65014 -21.27282 -19.78570 -18.51849 -18.02216 -17.21644 -16.56263 -16.43028 -15.63813 -15.23329 -14.87347 -14.32059 -13.84039 -13.73737 -13.47715 -13.13937 -13.00928 -12.79414 -12.69873 -12.39692 -12.25894 -12.19384 -12.02730 -11.78700 -11.68893 -11.40072 -11.21998 -11.06215 -10.52228 -9.21462 -8.17018 -6.28188 0.15485 1.04838 1.42350 1.44032 1.52930 1.55090 2.43025 2.79167 3.16465 3.17301 3.31744 3.65951 3.80507 4.12551 4.37990 4.42565 4.51623 4.55229 4.61134 4.71315 4.75143 4.89901 5.00403 5.07199 5.12642 5.24508 5.49201 5.68321 5.69775 5.82918 6.05553 6.19012 6.35803 6.88853 7.25455 7.40792 8.95007 Molecular weight = 237.13amu Principal moments of inertia in cm(-1) A = 0.068026 B = 0.004285 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.505648 B = 6532.238703 C = 6605.746272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.070 3.930 11 N -0.532 5.532 12 C 0.041 3.959 13 C -0.101 4.101 14 C 0.003 3.997 15 H 0.132 0.868 16 C 0.183 3.817 17 N -0.296 5.296 18 N -0.066 5.066 19 N -0.206 5.206 20 H 0.492 0.508 21 N -0.300 5.300 22 C 0.050 3.950 23 H 0.263 0.737 24 H 0.002 0.998 25 H -0.011 1.011 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 -20.478 -4.196 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.057 4.057 11 N -0.256 5.256 12 C -0.086 4.086 13 C -0.140 4.140 14 C -0.019 4.019 15 H 0.150 0.850 16 C -0.100 4.100 17 N -0.168 5.168 18 N -0.061 5.061 19 N -0.057 5.057 20 H 0.350 0.650 21 N -0.152 5.152 22 C -0.079 4.079 23 H 0.072 0.928 24 H 0.021 0.979 25 H 0.007 0.993 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.896 -20.765 -3.163 21.363 hybrid contribution 0.768 0.822 -0.801 1.381 sum 4.664 -19.943 -3.964 20.862 Atomic orbital electron populations 1.70108 1.07794 1.27730 1.51489 1.25944 0.95733 1.03258 0.94669 0.85443 0.78622 0.78424 0.78516 1.19612 1.20864 1.18818 1.21633 0.93545 0.92293 1.50824 0.92158 1.18978 0.94254 0.92002 0.95286 1.22167 0.95790 0.88492 0.99290 1.64836 1.14106 1.02651 1.44014 1.23166 0.96331 0.96487 0.92661 1.22536 0.94930 0.93123 1.03446 1.20457 0.98617 0.85373 0.97467 0.85040 1.25572 0.97145 0.95007 0.92287 1.75979 1.20118 1.07175 1.13533 1.78952 1.11760 1.00558 1.14861 1.47842 1.34334 1.14305 1.09172 0.64960 1.74679 1.23002 1.00640 1.16888 1.22832 0.94858 0.90813 0.99364 0.92791 0.97928 0.99288 0.92308 0.95040 0.93297 0.91707 0.87657 0.91124 0.91432 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.73 4.64 29.85 0.14 1.87 16 10 C 0.07 3.03 4.97 86.30 0.43 3.46 16 11 N -0.53 -19.80 5.40 -882.22 -4.77 -24.57 16 12 C 0.04 1.39 5.12 86.59 0.44 1.83 16 13 C -0.10 -2.57 6.60 31.80 0.21 -2.36 16 14 C 0.00 0.07 3.52 -10.66 -0.04 0.03 16 15 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 16 C 0.18 4.49 6.63 138.55 0.92 5.40 16 17 N -0.30 -8.44 12.30 -51.27 -0.63 -9.07 16 18 N -0.07 -1.52 13.48 37.02 0.50 -1.02 16 19 N -0.21 -3.20 7.91 37.00 0.29 -2.91 16 20 H 0.49 2.41 8.96 -347.67 -3.12 -0.71 16 21 N -0.30 -6.00 12.36 -51.20 -0.63 -6.63 16 22 C 0.05 1.46 6.34 86.44 0.55 2.01 16 23 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 24 H 0.00 0.14 6.82 -2.39 -0.02 0.12 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.03 1.29 7.81 -2.38 -0.02 1.27 16 28 H 0.05 1.62 8.00 -2.39 -0.02 1.60 16 29 H 0.06 2.49 7.69 -2.38 -0.02 2.47 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.98 7.69 -2.39 -0.02 1.96 16 32 H 0.07 2.06 7.68 -2.39 -0.02 2.05 16 33 H 0.06 1.69 7.57 -2.39 -0.02 1.67 16 Total: -1.00 -71.30 278.83 -1.58 -72.88 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -1.99 Total: 0.01 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 3.34 Total: -18.29 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -4.95 Total: -101.15 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.30 -1.58 -72.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308035816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.764 kcal (2) G-P(sol) polarization free energy of solvation -71.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds