Wall clock time and date at job start Mon Mar 30 2020 17:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99815 * 2 1 4 4 C 1.50698 * 109.47059 * 269.99844 * 3 2 1 5 5 H 1.08001 * 119.99878 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00070 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00257 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00110 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.46891 * 90.00474 * 8 6 4 10 10 H 1.48498 * 109.47213 * 209.99999 * 8 6 4 11 11 H 1.48494 * 109.47311 * 330.00526 * 8 6 4 12 12 C 1.34777 * 120.00060 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99930 * 179.97438 * 12 2 1 14 14 C 1.50696 * 119.99855 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47018 * 179.97438 * 14 12 2 16 16 C 1.50704 * 109.47417 * 180.02562 * 15 14 12 17 17 C 1.34664 * 126.58651 * 275.03863 * 16 15 14 18 18 N 1.34134 * 108.01786 * 179.74146 * 17 16 15 19 19 C 1.30496 * 109.25675 * 0.37372 * 18 17 16 20 20 N 1.35047 * 108.70161 * 359.62603 * 19 18 17 21 21 H 0.96997 * 126.40535 * 180.25138 * 20 19 18 22 22 H 1.09000 * 109.47264 * 269.99695 * 1 2 3 23 23 H 1.08998 * 109.47208 * 30.00488 * 1 2 3 24 24 H 1.09006 * 109.47010 * 150.00190 * 1 2 3 25 25 H 1.09005 * 109.47468 * 29.99526 * 3 2 1 26 26 H 1.09000 * 109.47005 * 150.00023 * 3 2 1 27 27 H 0.97000 * 120.00783 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47441 * 59.99731 * 14 12 2 29 29 H 1.08998 * 109.47505 * 299.99456 * 14 12 2 30 30 H 1.08992 * 109.47476 * 59.99861 * 15 14 12 31 31 H 1.09004 * 109.47205 * 299.99755 * 15 14 12 32 32 H 1.07998 * 125.99171 * 359.92955 * 17 16 15 33 33 H 1.08002 * 125.65353 * 179.89694 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3465 3.2568 -2.9127 8 14 3.7338 3.9287 -0.2530 9 1 5.1070 3.5069 0.1236 10 1 3.7497 5.3554 -0.6649 11 1 2.8273 3.7597 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0001 14 6 1.3854 -2.4722 0.0005 15 6 2.3797 -3.6352 0.0005 16 6 1.6262 -4.9403 -0.0001 17 6 1.1423 -5.5883 1.0767 18 7 0.5343 -6.7053 0.6501 19 6 0.6300 -6.7780 -0.6493 20 7 1.3016 -5.6946 -1.0953 21 1 1.5139 -5.4890 -2.0192 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 1.6084 2.0285 0.5138 26 1 3.1499 1.1384 0.5138 27 1 3.8233 4.0827 -3.0900 28 1 0.7591 -2.5302 -0.8896 29 1 0.7585 -2.5299 0.8903 30 1 3.0063 -3.5775 0.8904 31 1 3.0063 -3.5774 -0.8895 32 1 1.2262 -5.2638 2.1033 33 1 0.2337 -7.5709 -1.2663 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320675995.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:56 Heat of formation + Delta-G solvation = 17.595420 kcal Electronic energy + Delta-G solvation = -16268.684492 eV Core-core repulsion = 13523.423274 eV Total energy + Delta-G solvation = -2745.261217 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10485 -39.13662 -35.05422 -33.82934 -32.57421 -32.32189 -29.36884 -28.04118 -25.98959 -24.43646 -22.02755 -21.57074 -20.73987 -18.44070 -17.95380 -16.99537 -16.27102 -15.49763 -15.42557 -14.88442 -14.49472 -14.02785 -13.62745 -13.36054 -13.19796 -12.68583 -12.28888 -12.25638 -12.11363 -11.92450 -11.44486 -11.17697 -10.88866 -10.54076 -10.16920 -10.11245 -10.05328 -9.57937 -9.10514 -8.61831 -8.41671 -7.73942 -6.11858 -4.10896 1.94504 3.03306 3.06961 3.27445 3.30402 3.33530 3.35285 3.83956 4.37163 4.56450 4.78463 5.00584 5.12848 5.18865 5.26824 5.39039 5.49460 5.54059 5.70647 5.75606 5.85022 6.12048 6.13942 6.28309 6.65498 6.67029 6.91638 7.26145 7.29769 7.57995 7.95631 8.20845 8.43574 8.88507 8.94312 9.48472 11.01539 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.050776 B = 0.004693 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.308572 B = 5964.969099 C = 6027.315603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.214 3.786 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.505 3.495 13 O -0.543 6.543 14 C -0.132 4.132 15 C -0.031 4.031 16 C -0.012 4.012 17 C -0.029 4.029 18 N -0.496 5.496 19 C 0.175 3.825 20 N -0.567 5.567 21 H 0.420 0.580 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.265 0.735 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.169 0.831 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 -14.420 4.829 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.330 5.330 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.292 3.708 13 O -0.421 6.421 14 C -0.173 4.173 15 C -0.070 4.070 16 C -0.128 4.128 17 C -0.177 4.177 18 N -0.215 5.215 19 C -0.108 4.108 20 N -0.171 5.171 21 H 0.258 0.742 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.830 -14.833 5.279 17.162 hybrid contribution 0.656 1.334 -0.542 1.583 sum -6.175 -13.498 4.737 15.581 Atomic orbital electron populations 1.21670 0.80907 1.02964 1.00542 1.47852 1.06307 1.07193 1.71650 1.19672 0.92502 0.80117 0.98342 1.21323 1.37036 1.07186 0.91262 0.90873 1.24863 0.95201 0.97353 0.95620 1.69894 1.41477 1.23602 1.18694 0.86831 0.80143 0.79727 0.82880 1.19866 1.21048 1.19045 1.20338 0.88077 0.85141 0.77230 1.90673 1.13917 1.87299 1.50179 1.21664 0.99016 0.92561 1.04024 1.19802 0.95777 0.86191 1.05196 1.21454 1.06472 0.97595 0.87234 1.22112 1.03079 0.93641 0.98822 1.70261 1.21344 1.20664 1.09256 1.24921 1.00681 0.92946 0.92273 1.43351 1.44201 1.19549 1.09955 0.74231 0.93536 0.90593 0.92175 0.95221 0.94499 0.92536 0.89594 0.89039 0.88606 0.90240 0.81401 0.77789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.85 0.61 1.85 16 2 N -0.60 -12.04 2.86 -182.95 -0.52 -12.56 16 3 C 0.21 5.20 4.23 -5.20 -0.02 5.18 16 4 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 5 H 0.07 2.29 8.06 -52.49 -0.42 1.86 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 8 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 9 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 12 C 0.51 9.80 7.67 -10.99 -0.08 9.71 16 13 O -0.54 -12.80 15.56 5.56 0.09 -12.71 16 14 C -0.13 -1.77 4.23 -27.89 -0.12 -1.89 16 15 C -0.03 -0.39 5.06 -27.88 -0.14 -0.53 16 16 C -0.01 -0.13 6.49 -81.60 -0.53 -0.66 16 17 C -0.03 -0.36 11.79 -17.81 -0.21 -0.57 16 18 N -0.50 -6.39 11.25 -14.66 -0.16 -6.55 16 19 C 0.18 1.69 13.04 -90.37 -1.18 0.51 16 20 N -0.57 -5.28 6.15 -10.30 -0.06 -5.34 16 21 H 0.42 2.78 8.96 -40.82 -0.37 2.41 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 24 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 25 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 26 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.09 1.06 7.40 -51.93 -0.38 0.67 16 29 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 30 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.21 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 285.96 15.07 4.31 4.31 Total: -1.00 -35.89 285.96 -6.71 -42.60 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.35 Total: 0.13 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.11 Total: 0.13 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.02 Total: -51.24 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.89 -6.71 -42.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320675995.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.192 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds