Wall clock time and date at job start Mon Mar 30 2020 17:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99815 * 2 1 4 4 C 1.50698 * 109.47059 * 269.99844 * 3 2 1 5 5 H 1.08001 * 119.99878 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00070 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00257 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00110 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.46891 * 90.00474 * 8 6 4 10 10 H 1.48498 * 109.47213 * 209.99999 * 8 6 4 11 11 H 1.48494 * 109.47311 * 330.00526 * 8 6 4 12 12 C 1.34777 * 120.00060 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99930 * 179.97438 * 12 2 1 14 14 C 1.50696 * 119.99855 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47018 * 179.97438 * 14 12 2 16 16 C 1.50704 * 109.47417 * 180.02562 * 15 14 12 17 17 C 1.34664 * 126.58651 * 275.03863 * 16 15 14 18 18 N 1.34134 * 108.01786 * 179.74146 * 17 16 15 19 19 C 1.30496 * 109.25675 * 0.37372 * 18 17 16 20 20 N 1.35047 * 108.70161 * 359.62603 * 19 18 17 21 21 H 0.96997 * 126.40535 * 180.25138 * 20 19 18 22 22 H 1.09000 * 109.47264 * 269.99695 * 1 2 3 23 23 H 1.08998 * 109.47208 * 30.00488 * 1 2 3 24 24 H 1.09006 * 109.47010 * 150.00190 * 1 2 3 25 25 H 1.09005 * 109.47468 * 29.99526 * 3 2 1 26 26 H 1.09000 * 109.47005 * 150.00023 * 3 2 1 27 27 H 0.97000 * 120.00783 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47441 * 59.99731 * 14 12 2 29 29 H 1.08998 * 109.47505 * 299.99456 * 14 12 2 30 30 H 1.08992 * 109.47476 * 59.99861 * 15 14 12 31 31 H 1.09004 * 109.47205 * 299.99755 * 15 14 12 32 32 H 1.07998 * 125.99171 * 359.92955 * 17 16 15 33 33 H 1.08002 * 125.65353 * 179.89694 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3465 3.2568 -2.9127 8 14 3.7338 3.9287 -0.2530 9 1 5.1070 3.5069 0.1236 10 1 3.7497 5.3554 -0.6649 11 1 2.8273 3.7597 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0001 14 6 1.3854 -2.4722 0.0005 15 6 2.3797 -3.6352 0.0005 16 6 1.6262 -4.9403 -0.0001 17 6 1.1423 -5.5883 1.0767 18 7 0.5343 -6.7053 0.6501 19 6 0.6300 -6.7780 -0.6493 20 7 1.3016 -5.6946 -1.0953 21 1 1.5139 -5.4890 -2.0192 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 1.6084 2.0285 0.5138 26 1 3.1499 1.1384 0.5138 27 1 3.8233 4.0827 -3.0900 28 1 0.7591 -2.5302 -0.8896 29 1 0.7585 -2.5299 0.8903 30 1 3.0063 -3.5775 0.8904 31 1 3.0063 -3.5774 -0.8895 32 1 1.2262 -5.2638 2.1033 33 1 0.2337 -7.5709 -1.2663 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320675995.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:55 Heat of formation + Delta-G solvation = -7.728385 kcal Electronic energy + Delta-G solvation = -16269.782614 eV Core-core repulsion = 13523.423274 eV Total energy + Delta-G solvation = -2746.359340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.91962 -40.67272 -36.69209 -35.01621 -34.58082 -33.20216 -30.92116 -29.36660 -27.35850 -25.79812 -23.71335 -22.39714 -21.61253 -19.93338 -19.15496 -18.83639 -17.62962 -17.11583 -16.77022 -16.10257 -15.75889 -15.30829 -14.85752 -14.55634 -14.39221 -14.24644 -13.70612 -13.61740 -13.57264 -13.31106 -13.01935 -12.73768 -12.40702 -12.17406 -11.99868 -11.75263 -10.95762 -10.90794 -10.83891 -10.67535 -9.38877 -9.28938 -8.35056 -6.40246 1.12528 1.33146 1.36890 1.45463 1.80905 2.20779 2.27155 2.30693 2.45564 2.99695 3.60630 3.93337 4.02058 4.08870 4.25692 4.39978 4.53462 4.62750 4.67206 4.69963 4.80200 4.86520 4.97027 4.98963 5.11258 5.38183 5.45303 5.61480 5.81322 6.22663 6.59007 6.60946 6.70664 7.15750 7.20896 7.42419 8.81864 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.050776 B = 0.004693 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.308572 B = 5964.969099 C = 6027.315603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.221 3.779 4 C -0.537 4.537 5 H 0.028 0.972 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.238 1.238 12 C 0.495 3.505 13 O -0.595 6.595 14 C -0.114 4.114 15 C -0.021 4.021 16 C -0.019 4.019 17 C -0.041 4.041 18 N -0.537 5.537 19 C 0.190 3.810 20 N -0.561 5.561 21 H 0.433 0.567 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.019 0.981 27 H 0.268 0.732 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.175 0.825 33 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 -15.224 6.109 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C 0.099 3.901 4 C -0.576 4.576 5 H 0.047 0.953 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.161 1.161 12 C 0.285 3.715 13 O -0.477 6.477 14 C -0.154 4.154 15 C -0.060 4.060 16 C -0.135 4.135 17 C -0.188 4.188 18 N -0.256 5.256 19 C -0.094 4.094 20 N -0.165 5.165 21 H 0.273 0.727 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.192 0.808 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.337 -15.651 6.555 18.905 hybrid contribution 1.069 1.482 -1.044 2.105 sum -7.267 -14.168 5.511 16.850 Atomic orbital electron populations 1.21969 0.77631 1.03911 1.02991 1.47994 1.08451 1.06065 1.71500 1.19343 0.92813 0.82723 0.95257 1.21574 1.36775 1.06756 0.92451 0.95318 1.25859 0.95288 0.98966 0.98617 1.70045 1.42749 1.24527 1.21304 0.85706 0.79590 0.77732 0.79874 1.20156 1.20043 1.16085 1.21401 0.87850 0.86686 0.75607 1.90641 1.16465 1.88185 1.52385 1.21618 0.98740 0.88965 1.06114 1.19608 0.95480 0.86724 1.04227 1.21145 1.07075 0.97397 0.87885 1.22339 1.03197 0.93809 0.99493 1.70271 1.22964 1.21364 1.11018 1.25703 0.98780 0.93053 0.91861 1.43355 1.43696 1.19161 1.10277 0.72727 0.90181 0.91732 0.89278 0.93264 0.96250 0.92258 0.87831 0.86131 0.89404 0.91619 0.80777 0.73950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.09 10.24 127.77 1.31 3.40 16 2 N -0.61 -23.89 2.86 -851.12 -2.43 -26.32 16 3 C 0.22 10.65 4.23 85.63 0.36 11.01 16 4 C -0.54 -31.41 9.94 25.60 0.25 -31.16 16 5 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 6 C 0.01 0.63 5.47 84.65 0.46 1.09 16 7 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 8 Si 0.95 44.18 27.47 68.60 1.88 46.06 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 12 C 0.50 18.92 7.67 87.66 0.67 19.59 16 13 O -0.60 -28.65 15.56 -3.04 -0.05 -28.70 16 14 C -0.11 -2.83 4.23 29.85 0.13 -2.70 16 15 C -0.02 -0.51 5.06 29.85 0.15 -0.36 16 16 C -0.02 -0.39 6.49 40.95 0.27 -0.13 16 17 C -0.04 -0.94 11.79 83.52 0.98 0.04 16 18 N -0.54 -12.72 11.25 -200.31 -2.25 -14.97 16 19 C 0.19 3.12 13.04 180.26 2.35 5.47 16 20 N -0.56 -9.06 6.15 -186.49 -1.15 -10.21 16 21 H 0.43 4.67 8.96 -92.71 -0.83 3.84 16 22 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 24 H 0.09 1.89 6.44 -2.38 -0.02 1.87 16 25 H 0.05 2.17 7.13 -2.38 -0.02 2.16 16 26 H 0.02 1.00 6.85 -2.39 -0.02 0.99 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.10 2.24 7.40 -2.39 -0.02 2.22 16 29 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 30 H 0.09 2.25 8.10 -2.39 -0.02 2.23 16 31 H 0.07 1.75 8.10 -2.38 -0.02 1.73 16 32 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.24 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -80.87 285.96 3.47 -77.40 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.23 Total: 9.77 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 6.94 Total: 6.26 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -5.53 Total: -110.79 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.05 Total: -28.70 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -80.87 3.47 -77.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320675995.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.671 kcal (2) G-P(sol) polarization free energy of solvation -80.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds