Wall clock time and date at job start Mon Mar 30 2020 17:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47680 * 270.00658 * 3 2 1 5 5 H 1.48507 * 109.47088 * 30.00428 * 3 2 1 6 6 H 1.48499 * 109.47294 * 150.00134 * 3 2 1 7 7 C 1.37879 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00356 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99649 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47499 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99283 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00195 * 179.97438 * 11 10 9 14 14 C 1.47639 * 122.07296 * 0.02562 * 13 11 10 15 15 C 1.53637 * 106.71848 * 179.97438 * 14 13 11 16 16 C 1.53059 * 109.02334 * 59.55276 * 15 14 13 17 17 C 1.54096 * 110.14169 * 300.41328 * 16 15 14 18 18 C 1.47710 * 122.06998 * 179.97438 * 13 11 10 19 19 C 1.53330 * 107.96744 * 238.69352 * 18 13 11 20 20 C 1.53053 * 109.02339 * 299.72138 * 15 14 13 21 21 H 0.97000 * 119.99964 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47189 * 60.00435 * 9 7 2 23 23 H 1.08998 * 109.47411 * 299.99878 * 9 7 2 24 24 H 1.09001 * 109.47539 * 60.00197 * 10 9 7 25 25 H 1.09003 * 109.47606 * 300.00119 * 10 9 7 26 26 H 1.09004 * 110.00168 * 299.27083 * 14 13 11 27 27 H 1.08996 * 110.00954 * 60.57358 * 14 13 11 28 28 H 1.09003 * 109.66706 * 179.63197 * 15 14 13 29 29 H 1.08999 * 109.38904 * 60.25132 * 16 15 14 30 30 H 1.09000 * 109.38426 * 180.02562 * 16 15 14 31 31 H 1.09006 * 109.26263 * 240.55763 * 17 16 15 32 32 H 1.08997 * 110.25019 * 120.24998 * 17 16 15 33 33 H 1.09002 * 110.55853 * 359.73843 * 18 13 11 34 34 H 1.08997 * 109.45384 * 63.56360 * 19 18 13 35 35 H 1.08998 * 109.45581 * 183.50146 * 19 18 13 36 36 H 1.09006 * 109.38221 * 180.02562 * 20 15 14 37 37 H 1.08993 * 109.38516 * 299.85555 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5285 -2.6366 -0.0022 12 8 6.1349 -1.5862 -0.0018 13 7 6.2024 -3.8038 -0.0026 14 6 5.5109 -5.1082 -0.0037 15 6 6.6040 -6.1879 -0.0046 16 6 7.4742 -6.0178 1.2431 17 6 8.1241 -4.6207 1.2502 18 6 7.6785 -3.8572 -0.0032 19 6 8.1234 -4.6315 -1.2496 20 6 7.4630 -6.0271 -1.2610 21 1 -0.4850 0.8400 0.0004 22 1 3.8751 -0.6805 0.8888 23 1 3.8745 -0.6800 -0.8911 24 1 3.6579 -3.1498 -0.8925 25 1 3.6585 -3.1510 0.8875 26 1 4.8934 -5.2036 0.8895 27 1 4.8920 -5.2016 -0.8961 28 1 6.1437 -7.1760 0.0012 29 1 6.8552 -6.1267 2.1336 30 1 8.2524 -6.7810 1.2482 31 1 9.2088 -4.7286 1.2429 32 1 7.8206 -4.0679 2.1393 33 1 8.0979 -2.8511 -0.0078 34 1 7.8193 -4.0865 -2.1432 35 1 9.2080 -4.7394 -1.2421 36 1 8.2407 -6.7910 -1.2677 37 1 6.8358 -6.1407 -2.1451 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330088829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:13 Heat of formation + Delta-G solvation = -78.209101 kcal Electronic energy + Delta-G solvation = -17316.336266 eV Core-core repulsion = 14670.460997 eV Total energy + Delta-G solvation = -2645.875270 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.75300 -39.44425 -35.59854 -34.34336 -33.28792 -32.38733 -31.61643 -28.26914 -26.18192 -23.88083 -23.53167 -22.67186 -20.78091 -19.25865 -18.04104 -17.86243 -17.14163 -17.12376 -16.32988 -15.78757 -15.71430 -15.13948 -14.68519 -14.29697 -14.07393 -13.75126 -13.40039 -13.18016 -13.10450 -13.08319 -12.95406 -12.89535 -12.28433 -12.09117 -11.99105 -11.79681 -11.43339 -11.35332 -11.15238 -11.08812 -10.80125 -10.57928 -9.52991 -8.33656 -6.36524 1.30899 1.32591 1.48308 1.65430 2.01359 2.33176 3.01784 3.55511 3.70499 3.74109 3.95696 4.03984 4.22757 4.33912 4.38682 4.42419 4.44042 4.46819 4.51335 4.66119 4.76408 4.90612 4.93944 4.97724 5.09394 5.22303 5.27630 5.30274 5.32360 5.34983 5.38403 5.40676 5.58091 5.67626 6.21382 6.46273 6.69057 7.22504 7.28890 8.82070 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045124 B = 0.005624 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.366067 B = 4977.357013 C = 5240.223163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.007 3.993 10 C -0.110 4.110 11 C 0.513 3.487 12 O -0.593 6.593 13 N -0.610 5.610 14 C 0.104 3.896 15 C -0.094 4.094 16 C -0.108 4.108 17 C -0.124 4.124 18 C 0.128 3.872 19 C -0.124 4.124 20 C -0.108 4.108 21 H 0.268 0.732 22 H 0.007 0.993 23 H 0.006 0.994 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.110 -16.932 -0.036 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.031 4.031 10 C -0.150 4.150 11 C 0.303 3.697 12 O -0.474 6.474 13 N -0.344 5.344 14 C -0.017 4.017 15 C -0.112 4.112 16 C -0.146 4.146 17 C -0.163 4.163 18 C 0.026 3.974 19 C -0.162 4.162 20 C -0.146 4.146 21 H 0.077 0.923 22 H 0.026 0.974 23 H 0.025 0.975 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.265 -16.276 -0.034 24.465 hybrid contribution -0.251 1.302 -0.010 1.326 sum 18.014 -14.974 -0.044 23.425 Atomic orbital electron populations 1.70013 1.07691 1.28138 1.52391 1.25767 0.95489 1.02723 0.94181 0.85852 0.79170 0.79640 0.79195 1.19299 1.20025 1.18927 1.21397 0.91034 0.93791 1.50486 0.93104 1.19209 0.94121 0.93641 0.96148 1.21453 0.89342 0.99780 1.04392 1.21159 0.91014 0.82942 0.74555 1.90605 1.71357 1.32956 1.52493 1.48755 1.07218 1.05905 1.72543 1.22283 0.95633 0.81251 1.02580 1.21504 0.95119 0.98793 0.95784 1.21707 0.99540 0.96032 0.97303 1.22117 1.01767 0.96565 0.95810 1.21517 0.79415 0.99535 0.96969 1.22142 1.01686 0.96612 0.95809 1.21780 0.99485 0.96061 0.97244 0.92290 0.97414 0.97532 0.88436 0.88475 0.90619 0.90572 0.86860 0.91779 0.89195 0.89014 0.93359 0.91263 0.93504 0.88950 0.89245 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.69 13.96 21.45 0.30 -59.39 16 2 C 0.02 0.99 5.47 84.66 0.46 1.45 16 3 Si 0.94 47.86 27.47 68.60 1.88 49.75 16 4 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.26 -13.60 6.54 99.48 0.65 -12.95 16 7 C -0.53 -31.37 9.66 25.60 0.25 -31.13 16 8 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 9 C 0.01 0.35 3.33 29.85 0.10 0.45 16 10 C -0.11 -4.50 4.58 29.85 0.14 -4.36 16 11 C 0.51 20.18 7.75 87.66 0.68 20.86 16 12 O -0.59 -28.38 15.57 -3.03 -0.05 -28.42 16 13 N -0.61 -17.72 2.81 -789.51 -2.22 -19.93 16 14 C 0.10 2.18 5.28 86.38 0.46 2.63 16 15 C -0.09 -1.30 3.26 -10.54 -0.03 -1.34 16 16 C -0.11 -1.48 5.70 30.98 0.18 -1.31 16 17 C -0.12 -2.31 5.96 31.09 0.19 -2.13 16 18 C 0.13 3.16 3.49 45.00 0.16 3.32 16 19 C -0.12 -2.30 5.90 31.18 0.18 -2.12 16 20 C -0.11 -1.47 5.79 31.09 0.18 -1.29 16 21 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 22 H 0.01 0.41 7.16 -2.39 -0.02 0.40 16 23 H 0.01 0.34 7.53 -2.39 -0.02 0.32 16 24 H 0.10 3.67 8.12 -2.39 -0.02 3.65 16 25 H 0.10 3.67 8.13 -2.39 -0.02 3.65 16 26 H 0.08 1.54 8.13 -2.39 -0.02 1.52 16 27 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 28 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 2.12 7.20 -2.39 -0.02 2.11 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -74.39 290.69 3.82 -70.57 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: 0.97 Total: 2.38 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 2.93 Total: -14.95 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.92 Total: -79.32 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.88 Total: 49.75 kcal Total: -74.39 3.82 -70.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330088829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.637 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds