Wall clock time and date at job start Mon Mar 30 2020 17:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99910 * 2 1 4 4 H 1.07994 * 119.99728 * 200.37004 * 3 2 1 5 5 C 1.38811 * 120.00052 * 20.37539 * 3 2 1 6 6 N 1.31618 * 120.00286 * 14.97708 * 5 3 2 7 7 Si 1.86800 * 119.99892 * 194.98053 * 5 3 2 8 8 H 1.48497 * 109.47297 * 84.99988 * 7 5 3 9 9 H 1.48498 * 109.46970 * 205.00308 * 7 5 3 10 10 H 1.48509 * 109.47084 * 324.99941 * 7 5 3 11 11 C 1.46501 * 119.99596 * 180.02562 * 2 1 3 12 12 C 1.50705 * 109.47128 * 269.99757 * 11 2 1 13 13 N 1.31182 * 125.97155 * 269.69320 * 12 11 2 14 14 N 1.40415 * 108.28986 * 179.89033 * 13 12 11 15 15 H 0.96996 * 126.10999 * 180.14307 * 14 13 12 16 16 C 1.33944 * 107.77144 * 0.33027 * 14 13 12 17 17 C 1.36062 * 107.91326 * 359.85440 * 16 14 13 18 18 C 1.50823 * 123.05653 * 179.82953 * 17 16 14 19 19 O 1.43425 * 107.96005 * 344.90927 * 18 17 16 20 20 C 1.42995 * 114.39854 * 50.76063 * 19 18 17 21 21 C 1.50893 * 129.25275 * 179.90130 * 16 14 13 22 22 H 1.09009 * 109.46943 * 275.09217 * 1 2 3 23 23 H 1.09000 * 109.47294 * 35.08550 * 1 2 3 24 24 H 1.08995 * 109.47182 * 155.09339 * 1 2 3 25 25 H 0.96999 * 120.00494 * 179.97438 * 6 5 3 26 26 H 1.08997 * 109.46690 * 149.99756 * 11 2 1 27 27 H 1.09000 * 109.47099 * 30.00239 * 11 2 1 28 28 H 1.09003 * 109.77006 * 104.51052 * 18 17 16 29 29 H 1.08997 * 109.76578 * 225.28295 * 18 17 16 30 30 H 1.09005 * 109.43427 * 169.05021 * 20 19 18 31 31 H 1.08994 * 109.41140 * 49.14671 * 20 19 18 32 32 H 1.08997 * 109.81290 * 283.74384 * 21 16 14 33 33 H 1.09003 * 109.81825 * 44.58728 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3256 5 6 1.5208 2.3504 0.4185 6 7 0.3877 2.2835 1.0848 7 14 2.2826 4.0126 0.0361 8 1 1.8683 4.4462 -1.3224 9 1 1.8226 5.0097 1.0358 10 1 3.7626 3.9032 0.0910 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7045 1.4201 13 7 3.4992 -1.4011 2.1448 14 7 3.3506 -1.9971 3.4074 15 1 3.9775 -1.9373 4.1451 16 6 2.1903 -2.6663 3.4096 17 6 1.6107 -2.5029 2.1895 18 6 0.2852 -3.1199 1.8192 19 8 -0.0193 -4.1300 2.7908 20 6 0.0823 -3.6932 4.1486 21 6 1.5587 -3.4786 4.5133 22 1 -0.3633 0.0912 1.0237 23 1 -0.3634 0.8409 -0.5907 24 1 -0.3633 -0.9320 -0.4328 25 1 -0.0516 3.0973 1.3776 26 1 3.1498 -1.1382 -0.5144 27 1 1.6083 -2.0282 -0.5148 28 1 -0.4921 -2.3558 1.8262 29 1 0.3519 -3.5695 0.8285 30 1 -0.3475 -4.4491 4.8059 31 1 -0.4611 -2.7561 4.2693 32 1 2.0622 -4.4416 4.5977 33 1 1.6324 -2.9393 5.4577 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332626362.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:34 Heat of formation + Delta-G solvation = 54.120410 kcal Electronic energy + Delta-G solvation = -17270.403266 eV Core-core repulsion = 14526.725891 eV Total energy + Delta-G solvation = -2743.677375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00962 -37.78139 -35.60670 -32.77160 -31.47679 -30.47889 -29.51030 -26.41214 -25.69386 -24.56485 -23.42233 -21.65596 -19.24459 -18.72524 -17.37582 -16.57599 -15.96882 -15.35824 -14.80623 -14.35275 -14.15143 -13.64543 -13.49732 -13.34213 -12.93621 -12.73876 -12.10236 -11.60585 -11.38176 -10.96538 -10.85856 -10.81910 -10.66060 -10.38957 -10.04296 -9.93518 -9.77420 -9.53846 -8.67049 -8.51220 -7.78898 -6.79835 -5.69335 -3.12163 2.36658 3.32143 3.35359 3.44555 3.48091 3.50814 4.01673 4.56569 4.75255 4.95206 5.25615 5.30819 5.35397 5.52475 5.67095 5.71366 5.74245 5.77535 5.97457 6.02682 6.12180 6.47288 6.62015 6.68600 6.76921 7.27413 7.34028 7.40268 7.74999 7.80830 7.87820 8.37182 8.42895 9.26482 9.88233 10.35734 11.35870 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032960 B = 0.007511 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.311831 B = 3726.953826 C = 3947.838435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.584 5.584 3 C -0.247 4.247 4 H 0.072 0.928 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.215 3.785 12 C 0.098 3.902 13 N -0.286 5.286 14 N -0.477 5.477 15 H 0.429 0.571 16 C 0.073 3.927 17 C -0.271 4.271 18 C 0.145 3.855 19 O -0.385 6.385 20 C 0.069 3.931 21 C -0.086 4.086 22 H 0.028 0.972 23 H 0.046 0.954 24 H 0.001 0.999 25 H 0.251 0.749 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 -11.872 5.464 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.306 5.306 3 C -0.377 4.377 4 H 0.090 0.910 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.085 3.915 12 C -0.071 4.071 13 N -0.110 5.110 14 N -0.182 5.182 15 H 0.271 0.729 16 C -0.058 4.058 17 C -0.284 4.284 18 C 0.068 3.932 19 O -0.304 6.304 20 C -0.008 4.008 21 C -0.125 4.125 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.866 -11.268 5.457 12.550 hybrid contribution 0.135 1.050 0.767 1.308 sum 1.001 -10.217 6.224 12.006 Atomic orbital electron populations 1.20850 0.82119 0.95713 0.99470 1.44143 1.02034 1.00213 1.84211 1.19269 0.97184 0.84480 1.36734 0.90991 1.24994 0.97916 0.98445 0.98365 1.70094 1.18862 1.26714 1.39541 0.86248 0.78743 0.83898 0.77541 1.21368 1.21915 1.20537 1.19503 0.96908 0.88648 0.86412 1.23641 0.90337 0.92889 1.00272 1.77663 1.23731 1.20153 0.89418 1.45983 1.17231 1.40889 1.14077 0.72920 1.20560 0.89703 0.98228 0.97271 1.20345 1.01970 1.10834 0.95216 1.20963 0.91479 0.89426 0.91322 1.87940 1.89633 1.38092 1.14695 1.22499 0.93587 1.00637 0.84118 1.20983 0.97244 0.98877 0.95418 0.95355 0.93543 0.98055 0.93865 0.92081 0.92090 0.91876 0.88464 0.88455 0.92500 0.89584 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.02 59.85 0.54 4.54 16 2 N -0.58 -14.96 2.91 -182.50 -0.53 -15.49 16 3 C -0.25 -6.98 9.68 -15.06 -0.15 -7.13 16 4 H 0.07 2.02 7.86 -52.49 -0.41 1.61 16 5 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 6 N -0.91 -26.97 10.67 55.49 0.59 -26.37 16 7 Si 0.91 22.54 29.58 -169.99 -5.03 17.51 16 8 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 C 0.22 4.66 6.17 -5.19 -0.03 4.63 16 12 C 0.10 2.13 6.79 -82.59 -0.56 1.57 16 13 N -0.29 -6.32 12.72 33.55 0.43 -5.89 16 14 N -0.48 -8.43 7.33 33.49 0.25 -8.18 16 15 H 0.43 5.89 8.96 -182.36 -1.63 4.26 16 16 C 0.07 1.24 7.20 -82.36 -0.59 0.65 16 17 C -0.27 -5.20 6.01 -105.07 -0.63 -5.83 16 18 C 0.15 2.42 7.12 36.07 0.26 2.68 16 19 O -0.39 -5.89 10.74 -35.23 -0.38 -6.27 16 20 C 0.07 0.86 6.79 37.46 0.25 1.11 16 21 C -0.09 -1.04 6.56 -27.49 -0.18 -1.22 16 22 H 0.03 0.76 7.40 -51.92 -0.38 0.38 16 23 H 0.05 1.22 7.21 -51.93 -0.37 0.85 16 24 H 0.00 0.02 7.83 -51.93 -0.41 -0.39 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 27 H 0.06 1.13 7.84 -51.93 -0.41 0.73 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 277.92 15.07 4.19 4.19 Total: -1.00 -33.60 277.92 -7.37 -40.97 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.71 Total: -1.39 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.18 Total: 0.93 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.73 Total: -55.94 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.38 Total: -6.27 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.60 -7.37 -40.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332626362.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.092 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds