Wall clock time and date at job start Mon Mar 30 2020 17:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86797 * 120.00153 * 2 1 4 4 H 1.48501 * 109.47299 * 270.00104 * 3 2 1 5 5 H 1.48507 * 109.47091 * 29.99749 * 3 2 1 6 6 H 1.48492 * 109.47312 * 149.99987 * 3 2 1 7 7 C 1.40047 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00401 * 179.97438 * 7 2 1 9 9 C 1.46387 * 119.99686 * 0.02562 * 7 2 1 10 10 O 1.21684 * 119.99958 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99491 * 179.97438 * 9 7 2 12 12 C 1.46504 * 119.99788 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.47262 * 180.02562 * 12 11 9 14 14 H 1.09001 * 115.55292 * 29.27598 * 13 12 11 15 15 C 1.53006 * 117.49597 * 243.61136 * 13 12 11 16 16 C 1.52997 * 117.50138 * 174.99032 * 13 12 11 17 17 H 1.09002 * 117.49884 * 214.98139 * 16 13 12 18 18 C 1.53006 * 117.49537 * 359.97438 * 16 13 12 19 19 C 1.54257 * 110.03336 * 297.18352 * 18 16 13 20 20 C 1.54894 * 104.19577 * 217.10492 * 19 18 16 21 21 C 1.54894 * 102.74823 * 37.94415 * 20 19 18 22 22 C 1.53876 * 110.02919 * 180.02562 * 18 16 13 23 23 H 0.97004 * 120.00196 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00453 * 0.02562 * 11 9 7 25 25 H 1.08997 * 109.46619 * 59.99902 * 12 11 9 26 26 H 1.09002 * 109.47169 * 300.00530 * 12 11 9 27 27 H 1.08990 * 117.50086 * 359.97438 * 15 13 12 28 28 H 1.09004 * 117.49623 * 145.02417 * 15 13 12 29 29 H 1.09003 * 110.01485 * 58.63024 * 18 16 13 30 30 H 1.09003 * 110.49048 * 335.77960 * 19 18 16 31 31 H 1.09004 * 110.48838 * 98.42714 * 19 18 16 32 32 H 1.09005 * 110.75695 * 279.62844 * 20 19 18 33 33 H 1.08995 * 110.75651 * 156.25959 * 20 19 18 34 34 H 1.08992 * 110.48299 * 203.38142 * 21 20 19 35 35 H 1.09001 * 110.48481 * 80.73354 * 21 20 19 36 36 H 1.09009 * 110.03219 * 238.57025 * 22 18 16 37 37 H 1.08993 * 110.03702 * 359.95164 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4401 0.7000 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4806 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2164 -4.9165 0.0011 13 6 2.2106 -6.0794 0.0016 14 1 3.1681 -5.8791 0.4824 15 6 2.2111 -7.0088 -1.2138 16 6 1.6421 -7.4948 0.1208 17 1 2.2255 -8.2260 0.6803 18 6 0.1228 -7.6389 0.2309 19 6 -0.3806 -6.9571 1.5198 20 6 -1.5212 -7.8797 2.0168 21 6 -0.9810 -9.2951 1.6946 22 6 -0.2588 -9.1254 0.3422 23 1 -0.4850 0.8401 -0.0004 24 1 2.9189 -3.6477 0.0009 25 1 0.5894 -4.9743 -0.8886 26 1 0.5900 -4.9740 0.8913 27 1 1.5030 -6.7921 -2.0134 28 1 3.1689 -7.4204 -1.5322 29 1 -0.3582 -7.1940 -0.6402 30 1 0.4175 -6.9045 2.2603 31 1 -0.7643 -5.9609 1.2996 32 1 -2.4430 -7.6839 1.4688 33 1 -1.6753 -7.7599 3.0892 34 1 -1.8029 -10.0050 1.6018 35 1 -0.2799 -9.6200 2.4633 36 1 -0.9259 -9.4018 -0.4744 37 1 0.6381 -9.7442 0.3169 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520905187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:28 Heat of formation + Delta-G solvation = -62.041693 kcal Electronic energy + Delta-G solvation = -16763.540075 eV Core-core repulsion = 14118.365876 eV Total energy + Delta-G solvation = -2645.174198 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44977 -39.13448 -37.18913 -34.88156 -34.16441 -29.93826 -29.48742 -28.99130 -26.82226 -22.92183 -22.06496 -21.77162 -21.32579 -20.24536 -18.97450 -17.48540 -17.10966 -16.51988 -15.96453 -15.70378 -15.58380 -15.02064 -14.61981 -14.24017 -14.12295 -13.60880 -13.32916 -13.07136 -12.75161 -12.64700 -12.47585 -12.29944 -12.05402 -12.00938 -11.90544 -11.73474 -11.50540 -11.32356 -10.95431 -10.79449 -10.67467 -9.86223 -9.42339 -8.29646 -6.86673 1.39693 1.41727 1.57158 2.24611 2.46419 2.75292 3.20436 3.59199 3.60961 3.73095 3.76023 4.08150 4.10561 4.14407 4.39912 4.53806 4.57774 4.60914 4.71639 4.81200 4.81691 4.89965 4.94669 4.98171 5.05455 5.09802 5.24068 5.28420 5.31056 5.37168 5.39724 5.51157 5.55156 5.87171 6.24199 6.29229 6.85724 7.55967 8.48800 8.66978 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042025 B = 0.004927 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.102618 B = 5681.905655 C = 6143.644083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.534 3.466 10 O -0.635 6.635 11 N -0.755 5.755 12 C 0.164 3.836 13 C -0.170 4.170 14 H 0.118 0.882 15 C -0.165 4.165 16 C -0.118 4.118 17 H 0.129 0.871 18 C -0.065 4.065 19 C -0.124 4.124 20 C -0.128 4.128 21 C -0.117 4.117 22 C -0.111 4.111 23 H 0.274 0.726 24 H 0.395 0.605 25 H 0.019 0.981 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 -16.564 1.702 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.612 4.612 8 H 0.106 0.894 9 C 0.338 3.662 10 O -0.523 6.523 11 N -0.409 5.409 12 C 0.039 3.961 13 C -0.189 4.189 14 H 0.136 0.864 15 C -0.202 4.202 16 C -0.137 4.137 17 H 0.147 0.853 18 C -0.084 4.084 19 C -0.161 4.161 20 C -0.166 4.166 21 C -0.155 4.155 22 C -0.149 4.149 23 H 0.084 0.916 24 H 0.228 0.772 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.585 -16.516 1.695 16.986 hybrid contribution 0.314 1.071 -0.155 1.127 sum 3.899 -15.445 1.540 16.004 Atomic orbital electron populations 1.70200 1.09641 1.28956 1.36536 1.27018 0.95535 1.05067 0.91122 0.84983 0.78751 0.74851 0.79454 1.18561 1.19721 1.17110 1.21457 0.94768 0.90105 1.54826 0.89372 1.18674 0.86883 0.84491 0.76121 1.90541 1.16284 1.88087 1.57343 1.45848 1.09291 1.04806 1.80959 1.20638 0.93613 0.82963 0.98857 1.22450 1.00543 0.90723 1.05142 0.86361 1.23235 1.03374 1.02546 0.91065 1.22591 0.95316 0.95369 1.00385 0.85335 1.21362 0.92968 0.96897 0.97171 1.22500 0.98488 0.97755 0.97378 1.22538 0.97489 0.95662 1.00878 1.22344 1.00012 0.95992 0.97136 1.22166 1.00870 0.94070 0.97787 0.91566 0.77178 0.96218 0.93663 0.90030 0.86479 0.93108 0.91415 0.94456 0.92218 0.91217 0.90621 0.90774 0.91670 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.80 11.83 21.83 0.26 -51.55 16 2 C 0.03 1.56 5.50 85.30 0.47 2.03 16 3 Si 1.00 41.69 29.56 68.60 2.03 43.72 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.57 -33.62 9.54 24.83 0.24 -33.38 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 9 C 0.53 32.44 7.75 86.36 0.67 33.11 16 10 O -0.63 -44.43 15.02 -4.30 -0.06 -44.49 16 11 N -0.75 -35.91 5.55 -467.40 -2.59 -38.50 16 12 C 0.16 6.77 4.86 86.38 0.42 7.19 16 13 C -0.17 -4.94 5.77 -10.79 -0.06 -5.00 16 14 H 0.12 3.11 8.04 -2.39 -0.02 3.09 16 15 C -0.17 -3.98 9.83 30.60 0.30 -3.68 16 16 C -0.12 -2.74 4.83 -10.79 -0.05 -2.79 16 17 H 0.13 2.36 7.93 -2.39 -0.02 2.34 16 18 C -0.07 -1.64 2.49 -10.07 -0.03 -1.66 16 19 C -0.12 -3.49 4.81 31.67 0.15 -3.34 16 20 C -0.13 -2.93 6.91 31.89 0.22 -2.71 16 21 C -0.12 -2.08 6.83 31.66 0.22 -1.86 16 22 C -0.11 -2.09 6.45 31.31 0.20 -1.89 16 23 H 0.27 15.57 8.29 -92.71 -0.77 14.80 16 24 H 0.39 16.08 8.38 -92.71 -0.78 15.30 16 25 H 0.02 0.90 7.88 -2.39 -0.02 0.88 16 26 H 0.05 2.02 5.09 -2.39 -0.01 2.01 16 27 H 0.08 2.18 7.96 -2.39 -0.02 2.16 16 28 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.05 1.48 7.93 -2.39 -0.02 1.46 16 30 H 0.07 1.87 7.85 -2.39 -0.02 1.85 16 31 H 0.04 1.33 6.45 -2.38 -0.02 1.31 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.17 8.14 -2.38 -0.02 1.16 16 37 H 0.08 1.27 7.54 -2.39 -0.02 1.25 16 Total: -1.00 -76.62 298.90 2.65 -73.97 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.28 Total: 30.83 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 2.75 Total: -13.97 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -2.34 Total: -90.05 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.06 Total: -44.49 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -76.62 2.65 -73.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520905187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.924 kcal (2) G-P(sol) polarization free energy of solvation -76.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds