Wall clock time and date at job start Mon Mar 30 2020 17:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47474 * 327.25150 * 3 2 1 5 5 C 1.36940 * 120.00165 * 270.32748 * 4 3 2 6 6 H 1.08007 * 119.99938 * 188.70376 * 5 4 3 7 7 C 1.38810 * 119.99648 * 8.70715 * 5 4 3 8 8 N 1.31616 * 120.00357 * 25.53864 * 7 5 4 9 9 Si 1.86804 * 119.99733 * 205.53702 * 7 5 4 10 10 H 1.48502 * 109.46899 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46986 * 119.99795 * 9 7 5 12 12 H 1.48495 * 109.47066 * 239.99983 * 9 7 5 13 13 C 1.46504 * 120.00252 * 90.32803 * 4 3 2 14 14 C 1.53006 * 109.46884 * 270.00354 * 13 4 3 15 15 C 1.53000 * 109.47839 * 304.97073 * 14 13 4 16 16 C 1.53090 * 109.47795 * 184.93972 * 14 13 4 17 17 C 1.53174 * 109.16169 * 182.40988 * 16 14 13 18 18 C 1.53174 * 109.04057 * 56.97815 * 17 16 14 19 19 C 1.53085 * 109.16096 * 303.02193 * 18 17 16 20 20 O 1.42899 * 109.48037 * 64.99759 * 14 13 4 21 21 H 4.40637 * 5.51398 * 179.97438 * 4 1 2 22 22 H 1.09003 * 109.47136 * 207.24934 * 3 2 1 23 23 H 1.09008 * 109.47013 * 87.25554 * 3 2 1 24 24 H 0.96996 * 120.00153 * 180.02562 * 8 7 5 25 25 H 1.09002 * 109.47006 * 29.99607 * 13 4 3 26 26 H 1.08992 * 109.47738 * 149.99877 * 13 4 3 27 27 H 1.09002 * 109.46738 * 60.00256 * 15 14 13 28 28 H 1.09003 * 109.46812 * 179.97438 * 15 14 13 29 29 H 1.08993 * 109.47122 * 300.00282 * 15 14 13 30 30 H 1.09008 * 109.52512 * 302.31326 * 16 14 13 31 31 H 1.09000 * 109.52650 * 62.49869 * 16 14 13 32 32 H 1.09008 * 109.54336 * 297.10771 * 17 16 14 33 33 H 1.09004 * 109.62025 * 176.89567 * 17 16 14 34 34 H 1.09000 * 109.52255 * 183.11381 * 18 17 16 35 35 H 1.09003 * 109.51964 * 62.92504 * 18 17 16 36 36 H 1.08998 * 109.48477 * 297.62152 * 19 18 17 37 37 H 1.09008 * 109.48904 * 177.59253 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1607 0.7471 5 6 3.3567 -1.0640 2.0950 6 1 3.8475 -1.8698 2.6207 7 6 2.9508 0.0697 2.7855 8 7 1.9562 0.7992 2.3262 9 14 3.8162 0.5600 4.3667 10 1 4.8932 -0.4179 4.6653 11 1 4.4071 1.9133 4.2084 12 1 2.8369 0.5749 5.4828 13 6 3.3865 -2.4258 0.0524 14 6 2.1143 -3.2757 0.0637 15 6 1.6346 -3.4569 1.5052 16 6 2.4100 -4.6456 -0.5523 17 6 1.1185 -5.4682 -0.5925 18 6 0.0571 -4.6937 -1.3797 19 6 -0.1477 -3.3220 -0.7318 20 8 1.0975 -2.6217 -0.6983 21 1 -1.0498 -0.0002 0.0004 22 1 3.0089 0.9145 0.4705 23 1 3.0093 -0.0484 -1.0266 24 1 1.6728 1.5916 2.8085 25 1 3.6785 -2.2226 -0.9780 26 1 4.1880 -2.9647 0.5576 27 1 1.4237 -2.4814 1.9433 28 1 0.7280 -4.0620 1.5130 29 1 2.4101 -3.9561 2.0861 30 1 2.7904 -4.5150 -1.5655 31 1 3.1536 -5.1643 0.0528 32 1 0.7646 -5.6413 0.4239 33 1 1.3086 -6.4244 -1.0800 34 1 -0.8821 -5.2468 -1.3663 35 1 0.3899 -4.5641 -2.4096 36 1 -0.5192 -3.4518 0.2847 37 1 -0.8710 -2.7496 -1.3127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621549608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:34 Heat of formation + Delta-G solvation = 20.955293 kcal Electronic energy + Delta-G solvation = -18327.290577 eV Core-core repulsion = 15685.715398 eV Total energy + Delta-G solvation = -2641.575179 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70247 -37.66903 -34.41385 -34.03997 -33.15987 -31.86639 -28.94475 -27.77366 -27.60148 -24.89272 -23.89295 -21.93714 -19.89369 -19.22667 -18.02882 -17.03652 -16.90435 -16.46063 -15.78982 -15.43101 -15.36234 -15.04033 -14.60677 -14.00261 -13.70309 -13.36792 -13.32217 -12.98248 -12.94775 -12.72423 -12.47920 -12.35198 -12.10692 -11.96833 -11.76661 -11.71557 -11.50208 -10.86070 -10.54313 -10.44222 -10.03136 -9.91048 -8.86106 -7.72227 -5.05261 1.48030 1.52992 1.60324 2.51776 2.73471 2.93937 3.18851 3.36196 3.83281 4.01972 4.04065 4.10781 4.29702 4.35360 4.36818 4.51606 4.64342 4.71850 4.84975 4.91189 4.96685 5.01043 5.07784 5.09716 5.14130 5.18382 5.25968 5.42551 5.45639 5.48387 5.74117 5.80748 5.87371 6.35011 6.75937 7.20358 7.71267 7.95354 8.37526 9.28203 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031882 B = 0.009240 C = 0.008214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.014218 B = 3029.716329 C = 3408.000334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.085 4.085 3 C 0.275 3.725 4 N -0.591 5.591 5 C -0.243 4.243 6 H 0.077 0.923 7 C -0.050 4.050 8 N -0.909 5.909 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.296 1.296 12 H -0.306 1.306 13 C 0.155 3.845 14 C 0.094 3.906 15 C -0.150 4.150 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.145 4.145 19 C 0.058 3.942 20 O -0.370 6.370 21 H 0.202 0.798 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.241 0.759 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 -10.905 -7.007 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 C -0.088 4.088 3 C 0.150 3.850 4 N -0.310 5.310 5 C -0.372 4.372 6 H 0.094 0.906 7 C -0.246 4.246 8 N -0.555 5.555 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.223 1.223 12 H -0.234 1.234 13 C 0.029 3.971 14 C 0.052 3.948 15 C -0.207 4.207 16 C -0.175 4.175 17 C -0.155 4.155 18 C -0.183 4.183 19 C -0.019 4.019 20 O -0.289 6.289 21 H 0.219 0.781 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.815 -10.597 -7.017 12.735 hybrid contribution -0.368 0.426 1.438 1.545 sum -1.183 -10.171 -5.579 11.660 Atomic orbital electron populations 1.24363 0.95744 1.05348 1.07877 1.24068 0.95369 0.95597 0.93749 1.17703 0.83497 0.91050 0.92735 1.44310 1.74801 1.07095 1.04825 1.19374 1.30457 1.02271 0.85125 0.90557 1.25328 0.98304 1.00317 1.00625 1.70362 1.25576 1.18426 1.41168 0.85516 0.78485 0.77836 0.80444 1.19390 1.22305 1.23419 1.21130 0.93502 0.86061 0.96387 1.22307 0.90345 0.92424 0.89729 1.22124 0.99833 1.01237 0.97539 1.22107 0.98519 0.95261 1.01576 1.21582 0.94867 0.98719 1.00346 1.22119 1.00138 0.95997 1.00010 1.22459 0.87135 0.93448 0.98899 1.88103 1.20888 1.48076 1.71798 0.78129 0.91923 0.93056 0.94901 0.92430 0.91008 0.93642 0.93533 0.92954 0.91102 0.90525 0.92439 0.90002 0.89895 0.91231 0.95198 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.93 18.57 74.32 1.38 -13.55 16 2 C -0.08 -4.26 9.31 31.13 0.29 -3.97 16 3 C 0.28 13.48 5.43 84.57 0.46 13.94 16 4 N -0.59 -28.14 2.15 -712.53 -1.53 -29.68 16 5 C -0.24 -12.58 7.45 84.03 0.63 -11.96 16 6 H 0.08 3.87 7.93 -2.91 -0.02 3.85 16 7 C -0.05 -2.73 4.88 84.86 0.41 -2.32 16 8 N -0.91 -52.41 9.17 21.65 0.20 -52.21 16 9 Si 0.95 44.70 29.62 68.60 2.03 46.73 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 13 C 0.16 6.03 5.02 86.38 0.43 6.46 16 14 C 0.09 3.35 0.88 -10.76 -0.01 3.34 16 15 C -0.15 -5.88 7.15 71.98 0.51 -5.36 16 16 C -0.14 -3.69 4.92 30.68 0.15 -3.54 16 17 C -0.12 -2.77 5.72 30.71 0.18 -2.60 16 18 C -0.15 -3.51 6.14 30.68 0.19 -3.32 16 19 C 0.06 1.84 6.51 72.01 0.47 2.31 16 20 O -0.37 -14.23 7.13 -148.98 -1.06 -15.29 16 21 H 0.20 8.22 7.80 -4.43 -0.03 8.18 16 22 H 0.06 3.39 6.36 -2.39 -0.02 3.38 16 23 H 0.05 2.25 7.89 -2.38 -0.02 2.24 16 24 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 25 H 0.06 2.09 7.89 -2.39 -0.02 2.07 16 26 H 0.07 2.60 8.03 -2.39 -0.02 2.58 16 27 H 0.04 2.27 6.29 -2.39 -0.01 2.25 16 28 H 0.05 1.66 4.98 -2.39 -0.01 1.65 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 1.82 8.14 -2.38 -0.02 1.81 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.42 6.62 -2.38 -0.02 1.40 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.03 1.03 6.34 -2.39 -0.02 1.01 16 37 H 0.08 2.52 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -61.12 286.80 5.76 -55.36 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.03 Total: 15.66 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 5.09 Total: -20.58 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.33 Total: -81.89 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -1.06 Total: -15.29 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.12 5.76 -55.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621549608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.319 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds