Wall clock time and date at job start Mon Mar 30 2020 17:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99899 * 2 1 4 4 H 1.48508 * 109.46924 * 239.99878 * 3 2 1 5 5 H 1.48497 * 109.47413 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47362 * 120.00103 * 3 2 1 7 7 C 1.38810 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99637 * 163.17915 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17619 * 7 2 1 10 10 C 1.46923 * 120.63052 * 151.92570 * 9 7 2 11 11 C 1.53192 * 108.89264 * 126.47035 * 10 9 7 12 12 C 1.53041 * 109.31335 * 54.56274 * 11 10 9 13 13 C 1.52997 * 109.45926 * 178.61294 * 12 11 10 14 14 C 1.50697 * 109.47498 * 184.99950 * 13 12 11 15 15 N 1.33312 * 126.55109 * 269.69524 * 14 13 12 16 16 N 1.28995 * 107.35629 * 179.83237 * 15 14 13 17 17 N 1.28776 * 108.72725 * 0.42652 * 16 15 14 18 18 H 0.96993 * 125.45733 * 179.72739 * 17 16 15 19 19 N 1.28889 * 109.09983 * 359.73161 * 17 16 15 20 20 C 1.53034 * 109.53846 * 298.63620 * 12 11 10 21 21 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 22 22 H 0.97000 * 119.99586 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.58814 * 6.60497 * 10 9 7 24 24 H 1.09002 * 109.58411 * 246.32718 * 10 9 7 25 25 H 1.09005 * 109.49585 * 174.51826 * 11 10 9 26 26 H 1.08997 * 109.49466 * 294.60443 * 11 10 9 27 27 H 1.08998 * 109.45744 * 58.65976 * 12 11 10 28 28 H 1.09007 * 109.47206 * 305.00418 * 13 12 11 29 29 H 1.09001 * 109.47241 * 64.99676 * 13 12 11 30 30 H 1.09000 * 109.49720 * 181.31749 * 20 12 11 31 31 H 1.09010 * 109.49370 * 301.38037 * 20 12 11 32 32 H 1.08993 * 109.46933 * 113.74085 * 21 9 7 33 33 H 1.09000 * 109.71279 * 353.45490 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2701 9 7 1.3695 -2.3625 0.3443 10 6 1.8155 -3.6530 -0.1985 11 6 2.0654 -4.6199 0.9631 12 6 0.8078 -4.7041 1.8311 13 6 1.0418 -5.6954 2.9727 14 6 -0.2342 -5.8715 3.7548 15 7 -0.6209 -5.1600 4.8138 16 7 -1.7672 -5.6185 5.1877 17 7 -2.0986 -6.5887 4.4085 18 1 -2.9140 -7.1098 4.4741 19 7 -1.1731 -6.7568 3.5272 20 6 0.4928 -3.3235 2.4112 21 6 0.2251 -2.3418 1.2660 22 1 -0.4849 0.8401 -0.0004 23 1 2.7377 -3.5131 -0.7625 24 1 1.0449 -4.0598 -0.8533 25 1 2.3025 -5.6082 0.5692 26 1 2.8992 -4.2580 1.5647 27 1 -0.0311 -5.0425 1.2230 28 1 1.3517 -6.6564 2.5618 29 1 1.8219 -5.3135 3.6314 30 1 -0.3894 -3.3890 3.0480 31 1 1.3413 -2.9740 2.9998 32 1 -0.6769 -2.6405 0.7320 33 1 0.0955 -1.3373 1.6687 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648208252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:39 Heat of formation + Delta-G solvation = 108.716343 kcal Electronic energy + Delta-G solvation = -16941.130048 eV Core-core repulsion = 14232.112881 eV Total energy + Delta-G solvation = -2709.017167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.40469 -39.48272 -36.24443 -35.05864 -34.17854 -32.56566 -31.47523 -29.31701 -26.38159 -25.53055 -23.98707 -23.61229 -22.19425 -20.62542 -20.03517 -18.68681 -18.00718 -16.81263 -15.89074 -15.76827 -15.33041 -15.27744 -14.90463 -14.59811 -14.19544 -13.71874 -13.35222 -13.04064 -12.92245 -12.71829 -12.51141 -12.34691 -12.21137 -12.03410 -11.94192 -11.82570 -11.66456 -11.29522 -11.06132 -10.88983 -10.50928 -8.65195 -7.85075 -5.30685 0.19248 1.12477 1.47369 1.50764 1.57133 1.58329 2.53440 2.97814 3.29559 3.39445 3.74433 4.02326 4.08271 4.09189 4.48627 4.59176 4.64612 4.73578 4.76443 4.85415 4.93531 4.99376 5.11530 5.26597 5.33590 5.39454 5.46873 5.57770 5.68452 5.72102 5.79128 6.41554 7.16998 7.28397 7.89898 8.41789 9.21341 Molecular weight = 237.13amu Principal moments of inertia in cm(-1) A = 0.039395 B = 0.006000 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.588305 B = 4665.722682 C = 5053.448803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.055 4.055 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.611 5.611 10 C 0.137 3.863 11 C -0.112 4.112 12 C -0.064 4.064 13 C -0.014 4.014 14 C 0.177 3.823 15 N -0.303 5.303 16 N -0.069 5.069 17 N -0.209 5.209 18 H 0.490 0.510 19 N -0.306 5.306 20 C -0.117 4.117 21 C 0.180 3.820 22 H 0.248 0.752 23 H 0.057 0.943 24 H 0.010 0.990 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.044 0.956 31 H 0.055 0.945 32 H -0.016 1.016 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 -15.602 7.257 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.391 4.391 8 H 0.088 0.912 9 N -0.335 5.335 10 C 0.012 3.988 11 C -0.151 4.151 12 C -0.085 4.085 13 C -0.054 4.054 14 C -0.105 4.105 15 N -0.176 5.176 16 N -0.064 5.064 17 N -0.059 5.059 18 H 0.349 0.651 19 N -0.158 5.158 20 C -0.156 4.156 21 C 0.054 3.946 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.028 0.972 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.002 0.998 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.002 -15.331 7.712 17.191 hybrid contribution -0.431 0.904 -0.454 1.099 sum -1.433 -14.427 7.258 16.214 Atomic orbital electron populations 1.70206 1.06884 1.25773 1.55788 1.25847 0.96002 1.01712 1.01454 0.85331 0.77535 0.79092 0.78467 1.19802 1.22285 1.20348 1.19542 0.92910 0.86087 1.40573 0.91218 1.44323 1.35715 1.02649 1.50768 1.21119 0.97232 0.85920 0.94573 1.21909 0.96492 0.99890 0.96833 1.20915 0.98766 0.93454 0.95320 1.20212 0.88190 1.02093 0.94946 1.26047 0.99296 0.90557 0.94618 1.75916 1.04599 1.23701 1.13358 1.78875 1.09177 1.01580 1.16754 1.47818 1.18654 1.22900 1.16555 0.65146 1.74673 1.00249 1.25292 1.15616 1.21992 1.00149 0.96029 0.97441 1.20499 0.87574 0.97381 0.89106 0.94307 0.92418 0.97242 0.88714 0.91625 0.92562 0.86056 0.87712 0.93703 0.92637 0.99767 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.86 11.20 21.65 0.24 -57.62 16 2 C -0.06 -3.18 4.92 84.86 0.42 -2.77 16 3 Si 0.97 45.95 29.59 68.60 2.03 47.98 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.26 -14.66 9.58 84.03 0.81 -13.86 16 8 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 9 N -0.61 -31.44 3.00 -699.03 -2.10 -33.54 16 10 C 0.14 5.57 6.51 86.36 0.56 6.13 16 11 C -0.11 -3.40 5.36 30.67 0.16 -3.23 16 12 C -0.06 -2.00 2.14 -10.77 -0.02 -2.03 16 13 C -0.01 -0.34 5.32 29.85 0.16 -0.18 16 14 C 0.18 4.78 6.81 138.55 0.94 5.73 16 15 N -0.30 -9.20 11.81 -51.27 -0.61 -9.81 16 16 N -0.07 -1.78 13.48 37.02 0.50 -1.28 16 17 N -0.21 -4.02 7.91 37.00 0.29 -3.73 16 18 H 0.49 4.30 8.96 -347.69 -3.12 1.18 16 19 N -0.31 -7.25 12.36 -51.20 -0.63 -7.89 16 20 C -0.12 -4.64 5.20 30.67 0.16 -4.48 16 21 C 0.18 9.20 5.30 86.35 0.46 9.66 16 22 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 23 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 24 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.78 6.79 -2.39 -0.02 1.76 16 31 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 32 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.05 2.71 6.07 -2.39 -0.01 2.70 16 Total: -1.00 -71.77 272.89 1.38 -70.39 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -1.99 Total: 0.52 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 3.64 Total: -5.03 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -2.30 Total: -113.86 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -71.77 1.38 -70.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648208252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.102 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds