Wall clock time and date at job start Mon Mar 30 2020 17:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.52996 * 109.47553 * 270.00551 * 3 2 1 5 5 N 1.46503 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99885 * 179.97438 * 5 4 3 7 7 H 1.07993 * 120.00302 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99481 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00277 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99590 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47319 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47209 * 120.00426 * 10 8 6 13 13 H 1.48507 * 109.47045 * 240.00060 * 10 8 6 14 14 C 1.34783 * 119.99770 * 180.02562 * 2 1 3 15 15 O 1.21686 * 120.00018 * 180.71210 * 14 2 1 16 16 C 1.46683 * 119.99687 * 0.98531 * 14 2 1 17 17 C 1.37871 * 126.22699 * 168.24550 * 16 14 2 18 18 C 1.39837 * 107.08272 * 179.88432 * 17 16 14 19 19 C 1.35450 * 107.86611 * 0.38436 * 18 17 16 20 20 N 1.35536 * 108.87128 * 359.76483 * 19 18 17 21 21 H 0.96998 * 125.68430 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.46726 * 263.43821 * 1 2 3 23 23 H 1.08998 * 109.47119 * 23.43262 * 1 2 3 24 24 H 1.08993 * 109.47482 * 143.43689 * 1 2 3 25 25 H 1.09003 * 109.46805 * 30.00869 * 3 2 1 26 26 H 1.08999 * 109.47466 * 150.00017 * 3 2 1 27 27 H 1.09000 * 109.46819 * 299.99908 * 4 3 2 28 28 H 1.08994 * 109.47317 * 59.99746 * 4 3 2 29 29 H 0.97003 * 119.99583 * 0.02562 * 5 4 3 30 30 H 0.97004 * 120.00065 * 180.02562 * 9 8 6 31 31 H 1.08001 * 126.46462 * 0.03056 * 17 16 14 32 32 H 1.07998 * 126.07031 * 180.14899 * 18 17 16 33 33 H 1.08000 * 125.57066 * 179.76370 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1846 2.9794 -1.4424 6 6 3.5273 3.5722 -2.6283 7 1 3.2575 3.1045 -3.5635 8 6 4.2214 4.7743 -2.6281 9 7 4.5506 5.3441 -1.4883 10 14 4.6882 5.5834 -4.2459 11 1 4.2061 4.7475 -5.3747 12 1 4.0652 6.9291 -4.3243 13 1 6.1652 5.7164 -4.3247 14 6 2.1389 -1.1673 -0.0005 15 8 3.3557 -1.1674 0.0126 16 6 1.4055 -2.4374 -0.0229 17 6 1.9443 -3.6855 -0.2528 18 6 0.8941 -4.6060 -0.1807 19 6 -0.2440 -3.9185 0.0775 20 7 0.0531 -2.5997 0.1756 21 1 -0.5815 -1.8887 0.3562 22 1 -0.3633 -0.1174 1.0210 23 1 -0.3633 0.9429 -0.4087 24 1 -0.3634 -0.8253 -0.6121 25 1 1.6085 2.0282 0.5140 26 1 3.1500 1.1383 0.5138 27 1 3.0415 0.9508 -1.9563 28 1 1.5002 1.8408 -1.9562 29 1 3.4272 3.3993 -0.6023 30 1 5.0353 6.1843 -1.4882 31 1 2.9823 -3.9103 -0.4490 32 1 0.9754 -5.6749 -0.3118 33 1 -1.2277 -4.3505 0.1874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713571790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:54 Heat of formation + Delta-G solvation = 47.775193 kcal Electronic energy + Delta-G solvation = -16318.167293 eV Core-core repulsion = 13574.214768 eV Total energy + Delta-G solvation = -2743.952524 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.52970 -39.11240 -36.03807 -34.44550 -31.79799 -31.03205 -29.57400 -28.07905 -26.67455 -24.04836 -22.19591 -21.29492 -20.60843 -20.12289 -17.78410 -17.17007 -16.22879 -15.86959 -15.38327 -14.54991 -14.09887 -13.99109 -13.82433 -13.42007 -13.18631 -13.13449 -12.93483 -12.61666 -12.42015 -12.14906 -11.31659 -11.01169 -10.89276 -10.69522 -10.08103 -9.95871 -9.72140 -9.13498 -8.87147 -8.66916 -8.30625 -6.92762 -5.75405 -3.04757 1.44569 2.63649 2.86660 3.09244 3.44160 3.45096 3.50806 3.53193 4.49411 4.62409 4.72672 4.87575 4.99898 5.21929 5.29269 5.38051 5.49812 5.63569 5.78667 5.95507 5.99060 6.05920 6.08798 6.46655 6.59409 6.72680 6.82025 6.89274 7.20268 7.41289 7.72063 8.22222 8.42992 9.54109 10.09702 10.45020 11.47596 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051308 B = 0.004438 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.591118 B = 6307.787673 C = 6408.711394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.611 5.611 3 C 0.108 3.892 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.933 5.933 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.583 3.417 15 O -0.519 6.519 16 C -0.047 4.047 17 C -0.111 4.111 18 C -0.212 4.212 19 C 0.009 3.991 20 N -0.547 5.547 21 H 0.420 0.580 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.024 0.976 28 H 0.017 0.983 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.785 -16.872 5.294 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.345 5.345 3 C -0.014 4.014 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.372 3.628 15 O -0.394 6.394 16 C -0.160 4.160 17 C -0.138 4.138 18 C -0.236 4.236 19 C -0.127 4.127 20 N -0.151 5.151 21 H 0.266 0.734 22 H 0.076 0.924 23 H 0.108 0.892 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.200 -16.645 5.161 21.862 hybrid contribution -0.133 0.909 -0.551 1.071 sum -13.333 -15.736 4.611 21.134 Atomic orbital electron populations 1.22169 0.80951 1.04348 1.01015 1.47701 1.06293 1.06615 1.73898 1.21766 0.97602 0.82620 0.99380 1.20915 0.95177 0.89518 0.93037 1.42214 1.67128 1.21535 1.06641 1.19258 1.29392 1.02322 0.85970 0.91121 1.24749 1.01201 0.98045 0.96959 1.69671 1.45062 1.19543 1.23918 0.86089 0.77964 0.79098 0.82882 1.20541 1.21840 1.21761 1.17167 0.86878 0.81900 0.76887 1.90875 1.12456 1.86413 1.49658 1.20516 0.83192 0.95614 1.16659 1.21348 0.99820 0.90055 1.02566 1.20902 0.92171 0.99634 1.10906 1.22071 1.00320 0.83216 1.07053 1.43218 1.08080 1.08810 1.55029 0.73399 0.92378 0.89158 0.91099 0.90284 0.89323 0.95765 0.96486 0.78240 0.93519 0.83528 0.84097 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 8.89 59.85 0.53 1.08 16 2 N -0.61 -8.94 2.87 -183.13 -0.53 -9.46 16 3 C 0.11 1.89 5.50 -4.05 -0.02 1.87 16 4 C 0.14 3.07 6.58 -4.04 -0.03 3.04 16 5 N -0.73 -19.34 5.60 -59.91 -0.34 -19.68 16 6 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 7 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 10 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 14 C 0.58 9.65 7.64 -12.85 -0.10 9.56 16 15 O -0.52 -10.77 16.48 5.20 0.09 -10.68 16 16 C -0.05 -0.63 6.64 -81.98 -0.54 -1.17 16 17 C -0.11 -1.44 10.67 -39.12 -0.42 -1.85 16 18 C -0.21 -2.10 10.81 -39.98 -0.43 -2.53 16 19 C 0.01 0.07 11.89 -16.91 -0.20 -0.13 16 20 N -0.55 -5.10 5.03 -9.39 -0.05 -5.14 16 21 H 0.42 2.78 4.97 -40.82 -0.20 2.58 16 22 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 23 H 0.09 0.81 8.02 -51.93 -0.42 0.39 16 24 H 0.07 0.57 5.20 -51.93 -0.27 0.29 16 25 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 26 H 0.09 1.72 7.41 -51.93 -0.38 1.34 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 30 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 283.69 15.07 4.28 4.28 Total: -1.00 -35.56 283.69 -6.37 -41.93 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.07 Total: 6.66 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.46 Total: 2.29 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.18 Total: -62.33 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -35.56 -6.37 -41.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713571790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.702 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds