Wall clock time and date at job start Mon Mar 30 2020 17:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.52996 * 109.47553 * 270.00551 * 3 2 1 5 5 N 1.46503 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99885 * 179.97438 * 5 4 3 7 7 H 1.07993 * 120.00302 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99481 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00277 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99590 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47319 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47209 * 120.00426 * 10 8 6 13 13 H 1.48507 * 109.47045 * 240.00060 * 10 8 6 14 14 C 1.34783 * 119.99770 * 180.02562 * 2 1 3 15 15 O 1.21686 * 120.00018 * 180.71210 * 14 2 1 16 16 C 1.46683 * 119.99687 * 0.98531 * 14 2 1 17 17 C 1.37871 * 126.22699 * 168.24550 * 16 14 2 18 18 C 1.39837 * 107.08272 * 179.88432 * 17 16 14 19 19 C 1.35450 * 107.86611 * 0.38436 * 18 17 16 20 20 N 1.35536 * 108.87128 * 359.76483 * 19 18 17 21 21 H 0.96998 * 125.68430 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.46726 * 263.43821 * 1 2 3 23 23 H 1.08998 * 109.47119 * 23.43262 * 1 2 3 24 24 H 1.08993 * 109.47482 * 143.43689 * 1 2 3 25 25 H 1.09003 * 109.46805 * 30.00869 * 3 2 1 26 26 H 1.08999 * 109.47466 * 150.00017 * 3 2 1 27 27 H 1.09000 * 109.46819 * 299.99908 * 4 3 2 28 28 H 1.08994 * 109.47317 * 59.99746 * 4 3 2 29 29 H 0.97003 * 119.99583 * 0.02562 * 5 4 3 30 30 H 0.97004 * 120.00065 * 180.02562 * 9 8 6 31 31 H 1.08001 * 126.46462 * 0.03056 * 17 16 14 32 32 H 1.07998 * 126.07031 * 180.14899 * 18 17 16 33 33 H 1.08000 * 125.57066 * 179.76370 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1846 2.9794 -1.4424 6 6 3.5273 3.5722 -2.6283 7 1 3.2575 3.1045 -3.5635 8 6 4.2214 4.7743 -2.6281 9 7 4.5506 5.3441 -1.4883 10 14 4.6882 5.5834 -4.2459 11 1 4.2061 4.7475 -5.3747 12 1 4.0652 6.9291 -4.3243 13 1 6.1652 5.7164 -4.3247 14 6 2.1389 -1.1673 -0.0005 15 8 3.3557 -1.1674 0.0126 16 6 1.4055 -2.4374 -0.0229 17 6 1.9443 -3.6855 -0.2528 18 6 0.8941 -4.6060 -0.1807 19 6 -0.2440 -3.9185 0.0775 20 7 0.0531 -2.5997 0.1756 21 1 -0.5815 -1.8887 0.3562 22 1 -0.3633 -0.1174 1.0210 23 1 -0.3633 0.9429 -0.4087 24 1 -0.3634 -0.8253 -0.6121 25 1 1.6085 2.0282 0.5140 26 1 3.1500 1.1383 0.5138 27 1 3.0415 0.9508 -1.9563 28 1 1.5002 1.8408 -1.9562 29 1 3.4272 3.3993 -0.6023 30 1 5.0353 6.1843 -1.4882 31 1 2.9823 -3.9103 -0.4490 32 1 0.9754 -5.6749 -0.3118 33 1 -1.2277 -4.3505 0.1874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713571790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:53 Heat of formation + Delta-G solvation = 21.684402 kcal Electronic energy + Delta-G solvation = -16319.298674 eV Core-core repulsion = 13574.214768 eV Total energy + Delta-G solvation = -2745.083906 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.41797 -40.29855 -37.50319 -36.23364 -33.57451 -32.14236 -30.79691 -29.37525 -27.80895 -25.88362 -23.82188 -22.42605 -21.66758 -21.00724 -19.33132 -18.76572 -17.43401 -17.14828 -16.55278 -16.42637 -15.40432 -15.31283 -15.11621 -14.82315 -14.66648 -14.44002 -14.16331 -13.54423 -13.22957 -13.12703 -13.05798 -12.90229 -12.76206 -12.39122 -12.11463 -11.90368 -11.25498 -11.02086 -10.03607 -9.82555 -9.16837 -9.10240 -8.00577 -5.31860 0.45465 1.44898 1.47237 1.57130 1.75173 1.84853 2.24022 2.38255 2.53853 3.32785 3.53445 3.91555 4.04919 4.09062 4.17470 4.35220 4.40484 4.43475 4.50853 4.54096 4.67159 4.92107 5.02016 5.12886 5.26971 5.35283 5.44885 5.76211 5.93568 6.20932 6.27201 6.56773 7.00829 7.27235 7.97555 8.23820 9.22963 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051308 B = 0.004438 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.591118 B = 6307.787673 C = 6408.711394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.609 5.609 3 C 0.123 3.877 4 C 0.148 3.852 5 N -0.742 5.742 6 C -0.253 4.253 7 H 0.072 0.928 8 C -0.071 4.071 9 N -0.967 5.967 10 Si 0.979 3.021 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.292 1.292 14 C 0.575 3.425 15 O -0.581 6.581 16 C -0.080 4.080 17 C -0.130 4.130 18 C -0.228 4.228 19 C 0.044 3.956 20 N -0.533 5.533 21 H 0.434 0.566 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.061 0.939 27 H -0.004 1.004 28 H 0.032 0.968 29 H 0.376 0.624 30 H 0.254 0.746 31 H 0.129 0.871 32 H 0.163 0.837 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.812 -17.943 5.003 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.341 5.341 3 C -0.001 4.001 4 C 0.021 3.979 5 N -0.386 5.386 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.807 3.193 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.219 1.219 14 C 0.366 3.634 15 O -0.461 6.461 16 C -0.193 4.193 17 C -0.157 4.157 18 C -0.251 4.251 19 C -0.093 4.093 20 N -0.138 5.138 21 H 0.282 0.718 22 H 0.110 0.890 23 H 0.117 0.883 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.014 0.986 28 H 0.050 0.950 29 H 0.209 0.791 30 H 0.063 0.937 31 H 0.147 0.853 32 H 0.180 0.820 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -16.307 -17.727 4.869 24.574 hybrid contribution 0.718 1.112 -0.446 1.397 sum -15.589 -16.615 4.424 23.208 Atomic orbital electron populations 1.22543 0.77339 1.05649 1.03680 1.47740 1.08434 1.04910 1.73022 1.21408 0.97580 0.84658 0.96426 1.20951 0.94420 0.86835 0.95739 1.42386 1.67665 1.22873 1.05685 1.19626 1.29312 1.02665 0.86897 0.90956 1.25628 1.01440 0.98756 1.00540 1.69821 1.45902 1.19894 1.26098 0.85011 0.77216 0.78107 0.78998 1.19198 1.21216 1.21909 1.17706 0.86492 0.83311 0.75856 1.90826 1.15152 1.87390 1.52727 1.20006 0.85102 0.93987 1.20158 1.21525 1.00174 0.91184 1.02833 1.21223 0.91776 1.00553 1.11559 1.22876 1.01685 0.82089 1.02654 1.43169 1.06521 1.09985 1.54106 0.71757 0.88995 0.88293 0.89391 0.87799 0.92049 0.98557 0.94970 0.79144 0.93697 0.85274 0.81960 0.76357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 8.89 127.77 1.14 1.92 16 2 N -0.61 -17.56 2.87 -851.53 -2.45 -20.01 16 3 C 0.12 4.36 5.50 86.38 0.47 4.83 16 4 C 0.15 6.53 6.58 86.38 0.57 7.10 16 5 N -0.74 -40.21 5.60 -343.47 -1.92 -42.13 16 6 C -0.25 -14.91 9.99 84.03 0.84 -14.07 16 7 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 8 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 9 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 10 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 13 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 14 C 0.58 19.62 7.64 86.45 0.66 20.29 16 15 O -0.58 -25.91 16.48 -4.30 -0.07 -25.98 16 16 C -0.08 -2.10 6.64 40.35 0.27 -1.83 16 17 C -0.13 -3.35 10.67 22.57 0.24 -3.11 16 18 C -0.23 -3.92 10.81 22.01 0.24 -3.69 16 19 C 0.04 0.51 11.89 83.48 0.99 1.51 16 20 N -0.53 -8.13 5.03 -183.62 -0.92 -9.06 16 21 H 0.43 3.90 4.97 -92.71 -0.46 3.44 16 22 H 0.09 0.89 7.71 -2.38 -0.02 0.87 16 23 H 0.10 1.45 8.02 -2.39 -0.02 1.44 16 24 H 0.09 1.10 5.20 -2.39 -0.01 1.09 16 25 H 0.10 3.16 8.07 -2.39 -0.02 3.14 16 26 H 0.06 2.52 7.41 -2.39 -0.02 2.51 16 27 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.38 21.20 7.67 -92.71 -0.71 20.49 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.22 0.35 8.06 -2.91 -0.02 0.33 16 Total: -1.00 -80.74 283.69 2.79 -77.95 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -0.04 Total: 20.92 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 5.89 Total: 9.22 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -5.01 Total: -131.37 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.07 Total: -25.98 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -80.74 2.79 -77.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713571790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.632 kcal (2) G-P(sol) polarization free energy of solvation -80.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds