Wall clock time and date at job start Mon Mar 30 2020 17:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21591 * 120.00059 * 0.02562 * 14 13 3 16 16 C 1.47460 * 119.99729 * 180.02562 * 14 13 3 17 17 N 1.31289 * 125.70405 * 180.02562 * 16 14 13 18 18 C 1.33456 * 108.70805 * 179.97438 * 17 16 14 19 19 C 1.50691 * 126.08084 * 179.97438 * 18 17 16 20 20 C 1.35236 * 107.83561 * 0.02562 * 18 17 16 21 21 O 1.34311 * 107.21699 * 359.75761 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 28 28 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 29 29 H 1.09005 * 109.46864 * 90.03275 * 19 18 17 30 30 H 1.09002 * 109.46985 * 210.02614 * 19 18 17 31 31 H 1.08999 * 109.47699 * 330.02563 * 19 18 17 32 32 H 1.08002 * 126.39441 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3415 2.6318 0.4321 16 6 0.0454 3.3241 2.6268 17 7 -1.1065 3.9089 2.8609 18 6 -1.0967 4.3909 4.1054 19 6 -2.2212 5.1357 4.7775 20 6 0.1022 4.0930 4.6556 21 8 0.8087 3.4230 3.7304 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8292 -0.0604 -2.9503 28 1 2.2720 2.1231 1.9978 29 1 -2.8732 4.4264 5.2873 30 1 -1.8096 5.8372 5.5032 31 1 -2.7939 5.6823 4.0283 32 1 0.4289 4.3429 5.6542 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259948310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:22 Heat of formation + Delta-G solvation = -20.248327 kcal Electronic energy + Delta-G solvation = -16829.353217 eV Core-core repulsion = 13984.732309 eV Total energy + Delta-G solvation = -2844.620907 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.33283 -39.01688 -35.51048 -34.99779 -32.52266 -31.67868 -30.91506 -27.90147 -26.87426 -24.30835 -22.85213 -21.41981 -20.53151 -19.50615 -18.15170 -16.79629 -16.64267 -15.82589 -15.48253 -14.59205 -14.47828 -14.31365 -13.52533 -13.41925 -13.07588 -12.74353 -12.29243 -12.17897 -11.62017 -11.31459 -11.03127 -11.00339 -10.89443 -10.54191 -10.38798 -10.27286 -9.75810 -9.54699 -9.12950 -8.83477 -8.57533 -8.02497 -6.17944 -4.27858 1.08976 2.37953 2.63221 3.21728 3.29486 3.32016 3.48673 3.64909 4.29299 4.60689 4.72046 4.94195 5.14084 5.42826 5.44998 5.58229 5.78156 5.85291 6.18414 6.34517 6.40407 6.58761 6.97342 7.09508 7.15825 7.29623 7.46542 7.60251 7.72677 7.82114 8.08375 8.44461 8.62817 8.85962 9.38954 10.87592 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038889 B = 0.005942 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.832345 B = 4710.775173 C = 5190.983699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.056 0.944 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.685 5.685 14 C 0.597 3.403 15 O -0.497 6.497 16 C 0.159 3.841 17 N -0.425 5.425 18 C -0.022 4.022 19 C -0.070 4.070 20 C -0.066 4.066 21 O -0.186 6.186 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.027 0.973 25 H 0.034 0.966 26 H 0.104 0.896 27 H 0.265 0.735 28 H 0.396 0.604 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 5.405 13.261 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.334 5.334 14 C 0.377 3.623 15 O -0.372 6.372 16 C -0.048 4.048 17 N -0.158 5.158 18 C -0.146 4.146 19 C -0.127 4.127 20 C -0.139 4.139 21 O -0.070 6.070 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.122 0.878 27 H 0.075 0.925 28 H 0.229 0.771 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.488 5.249 11.877 14.098 hybrid contribution 1.791 -0.004 0.956 2.031 sum -3.697 5.245 12.834 14.349 Atomic orbital electron populations 1.21874 0.98229 0.98496 1.01237 1.21967 0.92687 0.99388 1.02722 1.19008 0.94779 0.89387 0.79979 0.92669 1.21219 0.90254 1.39404 1.06574 0.91788 1.24878 0.98798 0.94627 0.95255 1.69899 1.35170 1.37410 1.09299 0.86358 0.84552 0.77819 0.78177 1.19702 1.20808 1.20817 1.46504 1.13215 1.54306 1.19401 1.16167 0.83989 0.79715 0.82456 1.90876 1.51429 1.58766 1.36109 1.26535 0.86563 1.02460 0.89291 1.70316 1.19800 1.10240 1.15407 1.22014 0.97273 1.03983 0.91296 1.20103 0.94343 0.98707 0.99547 1.25151 0.92684 1.00250 0.95772 1.84514 1.43463 1.57412 1.21613 0.92883 0.94517 0.95414 0.94692 0.87836 0.92465 0.77111 0.90643 0.90662 0.90407 0.76471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.08 5.45 -26.74 -0.15 -3.22 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.06 1.56 7.58 -51.93 -0.39 1.17 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.10 11.30 55.43 0.63 -23.47 16 9 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.69 -14.47 5.02 -56.00 -0.28 -14.75 16 14 C 0.60 12.73 6.38 -12.50 -0.08 12.65 16 15 O -0.50 -12.12 14.21 5.29 0.08 -12.05 16 16 C 0.16 2.95 8.07 -14.03 -0.11 2.84 16 17 N -0.43 -7.75 11.25 -8.03 -0.09 -7.84 16 18 C -0.02 -0.30 7.10 -82.96 -0.59 -0.89 16 19 C -0.07 -0.63 10.43 36.00 0.38 -0.25 16 20 C -0.07 -0.78 12.10 29.66 0.36 -0.42 16 21 O -0.19 -2.85 10.52 5.01 0.05 -2.80 16 22 H 0.05 1.24 7.84 -51.93 -0.41 0.84 16 23 H 0.04 0.81 5.64 -51.93 -0.29 0.51 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.40 7.39 8.30 -40.82 -0.34 7.05 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.22 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 277.58 15.07 4.18 4.18 Total: -1.00 -30.60 277.58 -4.70 -35.30 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.82 Total: 4.29 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.43 Total: 1.93 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.25 Total: -46.06 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.13 Total: -14.84 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.60 -4.70 -35.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259948310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.052 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds