Wall clock time and date at job start Mon Mar 30 2020 17:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47198 * 90.00383 * 8 6 4 10 10 H 1.48506 * 109.47350 * 210.00533 * 8 6 4 11 11 H 1.48502 * 109.47345 * 330.00247 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.39503 * 120.00066 * 180.02562 * 15 13 12 17 17 C 1.36102 * 126.21451 * 359.68749 * 16 15 13 18 18 C 1.39767 * 107.82483 * 179.90420 * 17 16 15 19 19 N 1.30845 * 108.32180 * 0.36256 * 18 17 16 20 20 N 1.35247 * 126.21215 * 179.97438 * 16 15 13 21 21 C 1.46500 * 126.04822 * 359.92748 * 20 16 15 22 22 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 23 23 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 25 25 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 26 26 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 27 27 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 28 28 H 1.08000 * 126.08504 * 0.03367 * 17 16 15 29 29 H 1.08001 * 125.84063 * 180.14002 * 18 17 16 30 30 H 1.08997 * 109.46825 * 89.99724 * 21 20 16 31 31 H 1.08997 * 109.47207 * 209.99833 * 21 20 16 32 32 H 1.08998 * 109.46929 * 330.00275 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5461 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8526 1.1602 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7139 0.0385 -4.6633 17 6 2.4228 1.3521 -4.8682 18 6 2.6933 1.6464 -6.2075 19 7 3.1220 0.5559 -6.7898 20 7 3.1449 -0.4725 -5.8390 21 6 3.5625 -1.8565 -6.0761 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7083 1.1608 3.4844 26 1 2.2490 -1.6318 -1.1527 27 1 2.8167 -1.5973 -3.4167 28 1 2.0511 2.0444 -4.1272 29 1 2.5666 2.6085 -6.6816 30 1 2.6999 -2.4492 -6.3807 31 1 4.3153 -1.8790 -6.8641 32 1 3.9830 -2.2711 -5.1599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124629607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:03 Heat of formation + Delta-G solvation = 34.884006 kcal Electronic energy + Delta-G solvation = -16660.632559 eV Core-core repulsion = 13850.695120 eV Total energy + Delta-G solvation = -2809.937439 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.47414 -40.79363 -37.01286 -35.90373 -34.34309 -33.97095 -31.15105 -29.41719 -27.60077 -27.31495 -24.14196 -22.53837 -21.73422 -21.30009 -19.70145 -18.94437 -17.73692 -17.08528 -16.89199 -16.36055 -15.94913 -15.63935 -15.13528 -14.65264 -14.41714 -14.19223 -13.83065 -13.58894 -13.25707 -12.98512 -12.90730 -12.75051 -12.25959 -12.13648 -12.02923 -11.75087 -11.09968 -11.07572 -10.58975 -10.00111 -9.83450 -9.02264 -8.15907 -6.33081 0.80467 1.00508 1.48328 1.48795 1.59079 1.83454 2.01872 2.29886 2.43930 3.15225 3.30504 3.65050 4.24193 4.40191 4.50409 4.63048 4.66038 4.77046 4.94345 5.01221 5.10709 5.15427 5.38266 5.59088 5.63869 5.79167 5.86025 5.97759 6.10566 6.21680 6.71576 6.75032 7.14393 7.34904 7.58768 8.90610 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.050377 B = 0.005078 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.678990 B = 5513.133360 C = 5838.754399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.289 3.711 3 H 0.003 0.997 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.706 5.706 13 C 0.701 3.299 14 O -0.606 6.606 15 N -0.648 5.648 16 C 0.325 3.675 17 C -0.318 4.318 18 C 0.064 3.936 19 N -0.317 5.317 20 N -0.391 5.391 21 C 0.088 3.912 22 H 0.013 0.987 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.266 0.734 26 H 0.406 0.594 27 H 0.423 0.577 28 H 0.148 0.852 29 H 0.213 0.787 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.570 -8.140 -12.930 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.185 3.815 3 H 0.021 0.979 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.183 1.183 12 N -0.359 5.359 13 C 0.400 3.600 14 O -0.484 6.484 15 N -0.300 5.300 16 C 0.103 3.897 17 C -0.351 4.351 18 C -0.121 4.121 19 N -0.140 5.140 20 N -0.179 5.179 21 C -0.052 4.052 22 H 0.032 0.968 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.241 0.759 27 H 0.261 0.739 28 H 0.165 0.835 29 H 0.230 0.770 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.658 -7.674 -13.835 16.493 hybrid contribution -0.013 -0.499 1.748 1.818 sum 4.646 -8.173 -12.087 15.313 Atomic orbital electron populations 1.21937 0.98251 0.99596 0.99698 1.18318 0.90986 0.91850 0.80306 0.97885 1.21512 1.32683 1.13705 0.90484 0.90554 1.25770 0.94851 0.95580 1.02253 1.70047 1.36839 1.23926 1.24668 0.85332 0.77657 0.79212 0.78027 1.20521 1.21147 1.18269 1.45395 1.68684 1.14131 1.07726 1.15927 0.78603 0.84880 0.80553 1.90830 1.57370 1.16014 1.84224 1.41679 1.68775 1.14126 1.05400 1.17734 0.98855 0.91829 0.81302 1.21670 1.18896 0.95481 0.99041 1.24138 0.96754 0.98583 0.92650 1.77333 1.27538 0.96105 1.13034 1.48743 1.53906 1.11153 1.04136 1.22222 1.02587 0.75118 1.05261 0.96836 0.93949 0.91360 0.92520 0.75856 0.73886 0.83494 0.77028 0.89222 0.87726 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 9.26 71.98 0.67 -6.02 16 2 C 0.29 14.41 2.56 44.24 0.11 14.52 16 3 H 0.00 0.19 7.58 -2.39 -0.02 0.17 16 4 C -0.55 -27.62 8.73 25.60 0.22 -27.39 16 5 H 0.08 3.55 7.74 -2.91 -0.02 3.53 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -51.31 11.32 21.45 0.24 -51.07 16 8 Si 0.97 40.63 29.54 68.60 2.03 42.65 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 12 N -0.71 -27.59 5.07 -461.42 -2.34 -29.93 16 13 C 0.70 27.56 8.49 179.05 1.52 29.08 16 14 O -0.61 -29.39 13.13 -4.01 -0.05 -29.44 16 15 N -0.65 -18.81 5.42 -322.30 -1.75 -20.55 16 16 C 0.33 10.17 7.66 131.31 1.01 11.18 16 17 C -0.32 -11.15 9.65 22.14 0.21 -10.93 16 18 C 0.06 1.83 12.01 85.21 1.02 2.85 16 19 N -0.32 -9.13 12.56 -57.09 -0.72 -9.84 16 20 N -0.39 -10.08 4.02 -366.45 -1.47 -11.55 16 21 C 0.09 1.24 11.28 127.77 1.44 2.68 16 22 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 25 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 26 H 0.41 12.63 8.55 -92.71 -0.79 11.83 16 27 H 0.42 8.26 7.98 -92.71 -0.74 7.52 16 28 H 0.15 6.04 5.82 -2.91 -0.02 6.02 16 29 H 0.21 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 0.96 7.50 -2.39 -0.02 0.94 16 Total: -1.00 -70.10 277.52 2.22 -67.88 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.37 Total: 24.61 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.66 Total: 17.24 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -6.04 Total: -122.95 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.44 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -70.10 2.22 -67.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124629607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.767 kcal (2) G-P(sol) polarization free energy of solvation -70.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds