Wall clock time and date at job start Mon Mar 30 2020 17:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46932 * 2 1 4 4 C 1.35903 * 117.00204 * 180.02562 * 3 2 1 5 5 C 1.38710 * 120.04051 * 359.97438 * 4 3 2 6 6 C 1.38339 * 119.91689 * 180.02562 * 5 4 3 7 7 F 1.35109 * 119.99582 * 180.02562 * 6 5 4 8 8 C 1.38521 * 120.00896 * 359.97438 * 6 5 4 9 9 C 1.38209 * 120.08183 * 0.02562 * 8 6 5 10 10 C 1.38171 * 120.08013 * 0.28263 * 9 8 6 11 11 C 1.50705 * 120.00254 * 179.70244 * 10 9 8 12 12 C 1.53002 * 109.46732 * 264.99633 * 11 10 9 13 13 C 1.50705 * 109.46732 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00057 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99703 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99722 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00079 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47487 * 89.99673 * 17 15 13 19 19 H 1.48498 * 109.46991 * 210.00171 * 17 15 13 20 20 H 1.48502 * 109.47106 * 329.99470 * 17 15 13 21 21 H 1.09004 * 109.46464 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46977 * 300.00043 * 1 2 3 23 23 H 1.08993 * 109.47121 * 60.00844 * 1 2 3 24 24 H 1.08997 * 109.47825 * 239.99954 * 2 1 3 25 25 H 1.08998 * 109.47551 * 119.99337 * 2 1 3 26 26 H 1.08000 * 120.04296 * 0.02562 * 5 4 3 27 27 H 1.07994 * 119.95702 * 179.97438 * 8 6 5 28 28 H 1.08002 * 119.95546 * 179.97438 * 9 8 6 29 29 H 1.09002 * 109.46799 * 24.99551 * 11 10 9 30 30 H 1.08993 * 109.47162 * 144.99379 * 11 10 9 31 31 H 1.08998 * 109.46961 * 299.99356 * 12 11 10 32 32 H 1.08993 * 109.47504 * 59.99956 * 12 11 10 33 33 H 0.97001 * 120.00272 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 4.1994 0.4261 -0.0005 6 6 5.5705 0.6104 -0.0005 7 9 6.3958 -0.4593 -0.0010 8 6 6.0973 1.8915 -0.0011 9 6 5.2546 2.9870 -0.0011 10 6 3.8847 2.8070 0.0053 11 6 2.9676 4.0029 0.0121 12 6 2.5645 4.3282 1.4517 13 6 1.6479 5.5244 1.4585 14 1 1.3800 6.0047 0.5291 15 6 1.1513 6.0056 2.6514 16 7 0.3518 7.0497 2.6574 17 14 1.6152 5.1752 4.2591 18 1 2.8455 5.8036 4.8039 19 1 0.5064 5.3306 5.2345 20 1 1.8626 3.7311 4.0170 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 3.7881 -0.5725 -0.0005 27 1 7.1677 2.0344 -0.0007 28 1 5.6676 3.9850 -0.0012 29 1 3.4834 4.8588 -0.4232 30 1 2.0757 3.7800 -0.5734 31 1 2.0487 3.4723 1.8869 32 1 3.4564 4.5511 2.0372 33 1 0.0027 7.3885 3.4966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:38 Heat of formation + Delta-G solvation = -77.492278 kcal Electronic energy + Delta-G solvation = -16586.600768 eV Core-core repulsion = 13719.577615 eV Total energy + Delta-G solvation = -2867.023153 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.82171 -40.07135 -37.34415 -34.05854 -32.15258 -31.62578 -29.99459 -28.78627 -25.06050 -24.05309 -22.01642 -21.59244 -20.12759 -18.38143 -16.80097 -16.74806 -16.08604 -15.78176 -15.41039 -15.12723 -14.25227 -14.11020 -13.70379 -13.27000 -13.20664 -12.63665 -12.61533 -12.41535 -11.88633 -11.83193 -11.39661 -11.29987 -10.96182 -10.88336 -10.63218 -10.12026 -9.80515 -9.67849 -9.14104 -8.66850 -8.49717 -7.86602 -6.00789 -3.97978 1.30791 1.44774 3.28498 3.33399 3.40606 3.46460 3.75851 4.33459 4.49053 4.80025 4.92323 4.98557 5.06160 5.14933 5.22240 5.34043 5.41794 5.52616 5.79105 5.82209 6.04249 6.09153 6.17170 6.22625 6.40146 6.54633 6.69413 6.83429 6.99181 7.36182 7.48545 7.56058 7.83457 8.57544 9.04442 9.62267 11.12721 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.007307 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.332366 B = 3830.901441 C = 4494.940944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.294 6.294 4 C 0.158 3.842 5 C -0.248 4.248 6 C 0.116 3.884 7 F -0.145 7.145 8 C -0.189 4.189 9 C -0.058 4.058 10 C -0.102 4.102 11 C -0.061 4.061 12 C -0.004 4.004 13 C -0.517 4.517 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.019 0.981 32 H 0.010 0.990 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.843 -14.797 -5.706 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.207 6.207 4 C 0.112 3.888 5 C -0.267 4.267 6 C 0.097 3.903 7 F -0.124 7.124 8 C -0.208 4.208 9 C -0.076 4.076 10 C -0.103 4.103 11 C -0.098 4.098 12 C -0.042 4.042 13 C -0.555 4.555 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.153 0.847 27 H 0.150 0.850 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.593 -14.588 -5.586 16.955 hybrid contribution 0.453 -0.873 0.994 1.398 sum 7.047 -15.461 -4.592 17.601 Atomic orbital electron populations 1.21766 0.92548 1.02452 1.04197 1.22803 0.96255 0.82305 1.00974 1.86257 1.18107 1.28545 1.87791 1.18572 0.82534 0.92814 0.94879 1.21057 0.92544 0.99453 1.13685 1.17297 0.87113 0.83341 1.02583 1.91463 1.71912 1.54927 1.94060 1.20982 1.00850 0.90828 1.08188 1.20821 0.91579 0.98812 0.96407 1.19901 0.94632 0.93622 1.02150 1.20481 0.96730 0.91945 1.00661 1.19524 0.96187 0.97140 0.91301 1.21141 1.27576 1.11900 0.94849 0.90938 1.24993 0.94681 0.94685 0.99019 1.69911 1.33421 1.24265 1.26813 0.86820 0.78142 0.80863 0.83768 1.20316 1.21430 1.18986 0.90691 0.91023 0.91314 0.92310 0.92219 0.84748 0.85023 0.84217 0.91614 0.91076 0.96286 0.97181 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.27 16 2 C 0.05 0.64 5.46 37.16 0.20 0.84 16 3 O -0.29 -4.95 9.27 -19.43 -0.18 -5.13 16 4 C 0.16 2.66 6.66 -39.23 -0.26 2.39 16 5 C -0.25 -3.64 9.01 -39.37 -0.35 -3.99 16 6 C 0.12 1.69 7.30 -39.44 -0.29 1.40 16 7 F -0.14 -2.05 17.27 2.25 0.04 -2.01 16 8 C -0.19 -2.63 10.02 -39.49 -0.40 -3.02 16 9 C -0.06 -0.88 9.67 -39.62 -0.38 -1.26 16 10 C -0.10 -1.80 5.15 -104.46 -0.54 -2.34 16 11 C -0.06 -1.24 5.01 -27.88 -0.14 -1.38 16 12 C 0.00 -0.10 4.02 -27.88 -0.11 -0.21 16 13 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 17 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 25 H 0.06 0.67 7.66 -51.93 -0.40 0.28 16 26 H 0.13 1.66 6.30 -52.49 -0.33 1.33 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 28 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 29 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 30 H 0.07 1.48 7.68 -51.93 -0.40 1.08 16 31 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 32 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 285.39 15.07 4.30 4.30 Total: -1.00 -31.58 285.39 -6.46 -38.04 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.41 Total: -3.17 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -2.32 Total: -22.16 kcal Atomic # 7 Polarization: -28.13 SS G_CDS: 0.77 Total: -27.35 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.18 Total: -5.13 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.58 -6.46 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.449 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds