Wall clock time and date at job start Mon Mar 30 2020 17:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30181 * 126.80302 * 2 1 4 4 O 1.20916 * 111.60402 * 180.25518 * 3 2 1 5 5 C 1.34041 * 111.57207 * 359.74847 * 4 3 2 6 6 C 1.50694 * 126.78328 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44121 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00687 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.47294 * 14.99686 * 8 7 5 10 10 C 1.53002 * 109.47093 * 254.99977 * 8 7 5 11 11 N 1.46905 * 109.47206 * 134.99968 * 8 7 5 12 12 C 1.46901 * 110.99870 * 205.00135 * 11 8 7 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 8 14 14 C 1.50703 * 109.46807 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00107 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99714 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99765 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47110 * 90.00207 * 18 16 14 20 20 H 1.48501 * 109.47137 * 210.00199 * 18 16 14 21 21 H 1.48496 * 109.47323 * 330.00240 * 18 16 14 22 22 H 1.09003 * 109.46814 * 270.16064 * 1 2 3 23 23 H 1.08997 * 109.46752 * 30.16088 * 1 2 3 24 24 H 1.08999 * 109.47224 * 150.16235 * 1 2 3 25 25 H 1.08999 * 109.47545 * 270.00064 * 6 5 4 26 26 H 1.09002 * 109.46539 * 30.00591 * 6 5 4 27 27 H 1.09000 * 109.47120 * 150.00074 * 6 5 4 28 28 H 1.08996 * 109.46950 * 179.97438 * 10 8 7 29 29 H 1.09003 * 109.46813 * 300.00004 * 10 8 7 30 30 H 1.08999 * 109.47105 * 60.00118 * 10 8 7 31 31 H 1.00901 * 110.99869 * 81.04847 * 11 8 7 32 32 H 1.09004 * 109.47031 * 299.99620 * 12 11 8 33 33 H 1.08995 * 109.47111 * 59.99900 * 12 11 8 34 34 H 1.08995 * 109.46615 * 299.99641 * 13 12 11 35 35 H 1.08996 * 109.46939 * 60.00272 * 13 12 11 36 36 H 0.97007 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7254 -0.0050 5 6 3.6026 -0.6068 -0.0036 6 6 4.9022 -1.3696 -0.0091 7 6 2.3540 -1.1320 0.0025 8 6 1.9591 -2.5863 0.0059 9 1 2.8230 -3.1969 0.2686 10 6 1.4590 -2.9822 -1.3848 11 7 0.8900 -2.8012 0.9902 12 6 0.8786 -4.1931 1.4597 13 6 -0.2459 -4.3778 2.4806 14 6 -0.2580 -5.8060 2.9617 15 1 0.4638 -6.5113 2.5774 16 6 -1.1907 -6.2120 3.8924 17 7 -2.0700 -5.3531 4.3600 18 14 -1.2061 -7.9823 4.4882 19 1 -0.3278 -8.1117 5.6786 20 1 -2.5927 -8.3702 4.8517 21 1 -0.7101 -8.8725 3.4081 22 1 -0.3633 0.0029 1.0277 23 1 -0.3633 0.8885 -0.5163 24 1 -0.3633 -0.8914 -0.5113 25 1 5.2103 -1.5552 -1.0380 26 1 5.6686 -0.7850 0.5000 27 1 4.7677 -2.3202 0.5070 28 1 1.1738 -4.0342 -1.3825 29 1 0.5950 -2.3717 -1.6476 30 1 2.2522 -2.8228 -2.1152 31 1 -0.0080 -2.5399 0.6116 32 1 0.7140 -4.8605 0.6137 33 1 1.8355 -4.4271 1.9262 34 1 -0.0818 -3.7105 3.3265 35 1 -1.2026 -4.1441 2.0135 36 1 -2.7264 -5.6388 5.0146 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086110521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:22 Heat of formation + Delta-G solvation = 39.056548 kcal Electronic energy + Delta-G solvation = -16908.750718 eV Core-core repulsion = 14202.534557 eV Total energy + Delta-G solvation = -2706.216161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.74600 -37.47583 -34.41733 -33.57528 -32.79345 -30.69256 -28.61521 -27.88360 -27.53716 -24.50670 -23.28296 -20.79313 -20.64437 -19.84399 -17.50825 -16.74163 -16.29177 -15.22252 -14.68447 -14.38627 -14.34410 -13.76070 -13.41698 -13.18255 -13.06354 -12.77307 -12.58236 -12.49505 -12.31349 -12.20317 -11.62734 -11.40181 -11.12523 -10.94779 -10.59236 -10.57363 -10.07915 -9.67529 -9.43861 -9.19498 -8.96385 -8.37574 -7.87402 -6.01727 -4.04549 1.59685 2.39927 3.23767 3.30740 3.37053 3.39660 4.26157 4.43313 4.57444 4.73461 4.99639 5.03921 5.24146 5.30477 5.32650 5.34454 5.38700 5.54182 5.66666 5.74213 5.80478 5.92605 5.95346 6.05410 6.10553 6.29642 6.31812 6.42999 6.93186 7.42743 7.69036 7.78165 7.90200 8.05362 8.40528 8.44556 9.02672 9.59453 11.09667 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036802 B = 0.004830 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.636233 B = 5795.290713 C = 6068.414012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.039 3.961 3 N -0.377 5.377 4 O 0.090 5.910 5 C -0.042 4.042 6 C -0.071 4.071 7 C -0.170 4.170 8 C 0.158 3.842 9 H 0.086 0.914 10 C -0.177 4.177 11 N -0.683 5.683 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.338 0.662 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.014 0.986 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.994 7.436 -11.280 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.120 4.120 3 N -0.084 5.084 4 O 0.026 5.974 5 C -0.106 4.106 6 C -0.128 4.128 7 C -0.175 4.175 8 C 0.047 3.953 9 H 0.105 0.895 10 C -0.236 4.236 11 N -0.314 5.314 12 C -0.061 4.061 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.106 0.894 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.002 8.984 -10.614 17.130 hybrid contribution -0.562 -2.179 -0.317 2.273 sum 9.440 6.805 -10.932 15.966 Atomic orbital electron populations 1.20196 0.86134 1.02806 1.04011 1.23349 0.98857 0.88248 1.01515 1.73781 0.89320 1.24074 1.21217 1.84751 1.21721 1.22466 1.68464 1.24116 0.98085 0.83866 1.04561 1.20294 0.90147 0.98759 1.03606 1.20976 0.91317 0.97446 1.07749 1.19715 0.96422 0.88391 0.90820 0.89545 1.22481 1.01605 1.02011 0.97539 1.60656 1.06802 1.25481 1.38471 1.22207 1.01604 0.84658 0.97664 1.19064 0.91934 0.96687 0.93524 1.21159 1.15587 0.95510 1.23838 0.92755 1.24997 0.95518 0.97437 0.96355 1.69971 1.18432 1.34351 1.30441 0.86593 0.77224 0.85043 0.79120 1.20628 1.21221 1.19924 0.89361 0.91190 0.90351 0.89827 0.90069 0.89054 0.91664 0.92383 0.92425 0.84338 0.96381 0.92297 0.95662 0.96812 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 9.46 36.01 0.34 -0.60 16 2 C 0.04 0.59 7.28 -82.10 -0.60 -0.01 16 3 N -0.38 -5.98 12.07 33.42 0.40 -5.58 16 4 O 0.09 1.31 11.20 17.18 0.19 1.50 16 5 C -0.04 -0.54 7.49 -35.31 -0.26 -0.81 16 6 C -0.07 -0.60 10.26 36.00 0.37 -0.23 16 7 C -0.17 -2.42 5.23 -104.42 -0.55 -2.97 16 8 C 0.16 2.21 2.94 -68.86 -0.20 2.00 16 9 H 0.09 1.16 6.80 -51.93 -0.35 0.81 16 10 C -0.18 -2.14 9.14 37.16 0.34 -1.80 16 11 N -0.68 -11.69 5.88 -107.94 -0.63 -12.32 16 12 C 0.07 1.34 5.42 -3.82 -0.02 1.32 16 13 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 14 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.91 5.92 -51.93 -0.31 0.60 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.75 7.28 -51.93 -0.38 0.37 16 28 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 29 H 0.06 0.68 6.99 -51.93 -0.36 0.32 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.34 5.56 6.66 -39.29 -0.26 5.30 16 32 H 0.02 0.35 7.44 -51.93 -0.39 -0.03 16 33 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -31.32 299.96 -6.30 -37.62 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.36 Total: -0.24 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -1.14 Total: -15.93 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.51 Total: -43.88 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.19 Total: 1.50 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.32 -6.30 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.675 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds