Wall clock time and date at job start Mon Mar 30 2020 17:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47645 * 2 1 4 4 C 1.53000 * 109.47124 * 239.99716 * 2 1 3 5 5 C 1.53001 * 109.47535 * 175.00295 * 4 2 1 6 6 C 1.50697 * 109.47458 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99662 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00115 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99921 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99974 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47500 * 60.00454 * 10 8 6 12 12 H 1.48501 * 109.47186 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47291 * 300.00552 * 10 8 6 14 14 N 1.46904 * 109.46996 * 120.00161 * 2 1 3 15 15 C 1.49455 * 111.00225 * 53.36231 * 14 2 1 16 16 C 1.50542 * 104.84296 * 247.64740 * 15 14 2 17 17 H 1.08994 * 112.14080 * 77.92176 * 16 15 14 18 18 C 1.49349 * 131.80452 * 236.96014 * 16 15 14 19 19 C 1.56731 * 80.76848 * 135.45196 * 18 16 15 20 20 C 1.49647 * 81.04487 * 314.10022 * 19 18 16 21 21 N 1.46901 * 113.84175 * 292.76599 * 20 19 18 22 22 C 1.49950 * 110.99553 * 294.99567 * 14 2 1 23 23 H 1.09000 * 109.46675 * 300.00556 * 1 2 3 24 24 H 1.08998 * 109.46886 * 59.99801 * 1 2 3 25 25 H 1.08995 * 109.47645 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47208 * 55.00091 * 4 2 1 27 27 H 1.09001 * 109.47066 * 295.00190 * 4 2 1 28 28 H 1.09007 * 109.47006 * 59.99765 * 5 4 2 29 29 H 1.08997 * 109.47094 * 300.00446 * 5 4 2 30 30 H 0.96994 * 119.99861 * 179.97438 * 9 8 6 31 31 H 1.08999 * 110.36223 * 6.48348 * 15 14 2 32 32 H 1.08994 * 110.36233 * 128.80352 * 15 14 2 33 33 H 1.08997 * 114.65083 * 22.48342 * 18 16 15 34 34 H 1.09004 * 114.68414 * 248.41614 * 18 16 15 35 35 H 1.08998 * 114.60547 * 201.05825 * 19 18 16 36 36 H 1.09010 * 114.59798 * 67.13721 * 19 18 16 37 37 H 1.00893 * 111.00350 * 142.61121 * 21 20 19 38 38 H 1.00896 * 111.00063 * 266.57480 * 21 20 19 39 39 H 1.09000 * 110.86902 * 265.81902 * 22 14 2 40 40 H 1.08994 * 110.87063 * 29.29596 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 6 4.0672 -1.3245 -2.5438 7 1 3.3687 -1.8048 -3.2129 8 6 5.4184 -1.3608 -2.8155 9 7 6.2689 -0.7754 -2.0010 10 14 6.0410 -2.2415 -4.3406 11 1 5.4487 -1.6159 -5.5501 12 1 7.5210 -2.1369 -4.4032 13 1 5.6484 -3.6724 -4.2809 14 7 2.0196 -0.6926 1.1995 15 6 1.4132 -2.0534 1.3173 16 6 0.5223 -1.9750 2.5283 17 1 -0.4175 -1.4660 2.3146 18 6 0.4847 -2.7734 3.7899 19 6 0.3307 -1.3367 4.3969 20 6 1.4518 -1.0676 3.4429 21 7 2.7073 -1.7434 3.7962 22 6 1.6410 0.0544 2.4433 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6054 -0.2619 -2.1369 27 1 1.7516 -1.7716 -1.2055 28 1 3.9995 -1.0730 -0.4259 29 1 3.8533 0.4367 -1.3573 30 1 7.2195 -0.8013 -2.1920 31 1 0.8259 -2.2852 0.4288 32 1 2.1901 -2.8033 1.4658 33 1 1.4202 -3.2742 4.0391 34 1 -0.3935 -3.4098 3.8999 35 1 0.6018 -1.2573 5.4497 36 1 -0.6060 -0.8373 4.1489 37 1 3.1903 -2.0639 2.9704 38 1 3.2983 -1.1419 4.3502 39 1 2.4447 0.7213 2.7556 40 1 0.7140 0.6085 2.2965 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246855152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:52 Heat of formation + Delta-G solvation = 71.001076 kcal Electronic energy + Delta-G solvation = -18019.514816 eV Core-core repulsion = 15450.516969 eV Total energy + Delta-G solvation = -2568.997847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.83673 -38.37950 -35.36801 -33.40125 -32.36290 -30.74443 -29.51884 -27.40654 -26.39551 -24.41977 -23.12865 -21.75064 -20.56933 -20.03485 -18.37634 -17.66933 -16.59140 -16.36129 -16.20391 -15.70877 -15.35195 -14.61955 -14.52065 -14.41887 -13.82566 -13.68715 -13.39809 -13.29662 -12.92027 -12.82808 -12.79538 -12.50981 -12.41551 -12.30615 -11.83980 -11.69293 -11.59261 -11.44108 -11.27409 -10.94701 -10.50458 -10.02795 -9.45184 -9.15268 -8.15592 -6.26503 1.38702 1.41971 1.49749 2.42256 2.64945 2.98413 3.16776 3.41784 3.69972 3.87341 3.97369 4.14753 4.21589 4.31275 4.37639 4.46555 4.53707 4.68169 4.72848 4.76084 4.86741 4.90332 4.92583 4.99915 5.10377 5.15998 5.25066 5.26431 5.33012 5.42073 5.55783 5.67096 5.84334 5.95892 5.99307 6.22039 6.26000 6.31641 6.50448 6.92488 7.41845 8.95610 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.035489 B = 0.005782 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.792318 B = 4841.372773 C = 5119.084123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.078 3.922 3 H 0.062 0.938 4 C -0.088 4.088 5 C 0.042 3.958 6 C -0.544 4.544 7 H 0.054 0.946 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.523 5.523 15 C 0.055 3.945 16 C -0.174 4.174 17 H 0.097 0.903 18 C -0.097 4.097 19 C -0.083 4.083 20 C 0.042 3.958 21 N -0.812 5.812 22 C 0.030 3.970 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.002 0.998 29 H -0.024 1.024 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.345 0.655 38 H 0.343 0.657 39 H 0.063 0.937 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.872 -0.596 11.908 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.031 4.031 3 H 0.081 0.919 4 C -0.126 4.126 5 C 0.005 3.995 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.193 1.193 14 N -0.246 5.246 15 C -0.072 4.072 16 C -0.194 4.194 17 H 0.116 0.884 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.053 4.053 21 N -0.343 5.343 22 C -0.099 4.099 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.021 0.979 29 H -0.006 1.006 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.081 0.919 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.554 -1.098 12.219 18.282 hybrid contribution 0.577 0.715 -1.616 1.859 sum -12.977 -0.383 10.603 16.762 Atomic orbital electron populations 1.22418 0.95652 1.02438 1.02559 1.21767 0.93542 0.97274 0.90487 0.91943 1.21505 0.96837 0.98883 0.95396 1.18786 0.91839 0.93852 0.95063 1.21750 0.92531 1.34535 1.09429 0.92737 1.25942 0.97347 0.96425 0.99984 1.70112 1.02606 1.45519 1.39045 0.85568 0.77045 0.79254 0.79568 1.19245 1.20814 1.19280 1.65592 1.55544 1.01997 1.01501 1.21963 0.96352 0.91367 0.97546 1.23906 0.98804 1.03307 0.93385 0.88445 1.22808 1.03166 0.95338 0.92167 1.22623 0.95221 0.96335 0.97897 1.22554 0.91560 0.93025 0.98123 1.59157 1.07286 1.41966 1.25860 1.22950 1.00267 0.96150 0.90484 0.91485 0.91642 0.92001 0.93142 0.93386 0.97912 1.00552 0.92982 0.92255 0.92262 0.87176 0.91501 0.90529 0.87828 0.84087 0.84305 0.91870 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.49 8.01 71.98 0.58 -3.91 16 2 C 0.08 2.69 2.32 44.91 0.10 2.79 16 3 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.09 -3.76 4.55 30.59 0.14 -3.62 16 5 C 0.04 2.29 4.86 29.85 0.15 2.44 16 6 C -0.54 -32.16 9.11 25.60 0.23 -31.93 16 7 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 8 C 0.00 0.03 5.46 84.65 0.46 0.49 16 9 N -0.93 -58.65 13.29 21.45 0.28 -58.36 16 10 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 N -0.52 -17.26 4.47 -863.26 -3.86 -21.11 16 15 C 0.05 1.65 4.76 85.01 0.40 2.06 16 16 C -0.17 -4.03 4.02 -20.55 -0.08 -4.11 16 17 H 0.10 2.06 6.79 -2.39 -0.02 2.05 16 18 C -0.10 -1.96 7.98 21.75 0.17 -1.79 16 19 C -0.08 -1.47 7.94 20.92 0.17 -1.30 16 20 C 0.04 0.95 2.66 -4.93 -0.01 0.94 16 21 N -0.81 -19.86 7.29 -186.81 -1.36 -21.22 16 22 C 0.03 0.81 6.01 85.20 0.51 1.32 16 23 H 0.07 1.50 6.25 -2.39 -0.01 1.48 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.57 6.03 -2.39 -0.01 1.56 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.02 6.59 -2.39 -0.02 2.01 16 28 H 0.00 0.15 7.75 -2.38 -0.02 0.13 16 29 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.70 16 31 H 0.06 1.85 4.94 -2.39 -0.01 1.83 16 32 H 0.06 2.00 7.12 -2.39 -0.02 1.98 16 33 H 0.11 2.55 6.39 -2.39 -0.02 2.54 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.52 7.50 -2.38 -0.02 1.50 16 37 H 0.34 10.14 6.88 -89.70 -0.62 9.52 16 38 H 0.34 7.73 9.08 -89.70 -0.81 6.91 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.60 5.94 -2.39 -0.01 1.59 16 Total: -1.00 -65.01 297.85 -0.48 -65.49 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.40 Total: 24.24 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 2.82 Total: -36.62 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -4.93 Total: -100.70 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -65.01 -0.48 -65.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246855152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.494 kcal (2) G-P(sol) polarization free energy of solvation -65.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds