Wall clock time and date at job start Mon Mar 30 2020 17:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86794 * 120.00022 * 2 1 4 4 H 1.48498 * 109.47434 * 269.99690 * 3 2 1 5 5 H 1.48509 * 109.46906 * 29.99786 * 3 2 1 6 6 H 1.48500 * 109.47322 * 149.99290 * 3 2 1 7 7 C 1.38736 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99773 * 0.02562 * 7 2 1 9 9 S 1.76195 * 119.99934 * 180.02562 * 7 2 1 10 10 C 1.76202 * 99.99949 * 180.02562 * 9 7 2 11 11 N 1.30924 * 124.97324 * 359.97438 * 10 9 7 12 12 C 1.35961 * 108.72762 * 180.02562 * 11 10 9 13 13 C 1.39671 * 133.63267 * 179.97438 * 12 11 10 14 14 C 1.37698 * 119.75710 * 180.02562 * 13 12 11 15 15 C 1.38891 * 120.38387 * 0.03525 * 14 13 12 16 16 F 1.35108 * 119.78028 * 179.97438 * 15 14 13 17 17 C 1.38210 * 120.43043 * 359.94282 * 15 14 13 18 18 C 1.38545 * 119.88539 * 0.04167 * 17 15 14 19 19 O 1.34581 * 124.97370 * 180.02562 * 10 9 7 20 20 H 0.97001 * 120.00495 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.12023 * 359.97438 * 13 12 11 22 22 H 1.08008 * 119.80634 * 180.02562 * 14 13 12 23 23 H 1.08001 * 120.05503 * 180.30921 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.7002 7 6 2.0094 -1.2015 0.0005 8 1 1.4694 -2.1368 0.0005 9 16 3.7714 -1.2015 0.0012 10 6 4.0774 -2.9367 0.0010 11 7 3.1512 -3.8621 0.0009 12 6 3.7524 -5.0815 0.0012 13 6 3.2719 -6.3930 0.0018 14 6 4.1593 -7.4459 0.0026 15 6 5.5282 -7.2110 0.0036 16 9 6.3879 -8.2532 0.0049 17 6 6.0166 -5.9180 0.0026 18 6 5.1368 -4.8478 0.0015 19 8 5.2974 -3.5049 0.0018 20 1 -0.4851 0.8400 -0.0004 21 1 2.2083 -6.5805 0.0024 22 1 3.7886 -8.4604 0.0026 23 1 7.0822 -5.7424 -0.0017 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641429708.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:44 Heat of formation + Delta-G solvation = -9.915019 kcal Electronic energy + Delta-G solvation = -13692.025219 eV Core-core repulsion = 10933.593207 eV Total energy + Delta-G solvation = -2758.432012 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 239.016 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.86182 -42.59418 -37.44907 -34.10538 -32.83484 -30.64267 -29.00749 -26.04410 -23.91766 -22.71960 -21.64852 -18.91434 -17.96027 -16.94664 -16.75097 -16.37033 -15.53540 -15.40759 -15.19364 -14.63273 -14.02163 -13.22353 -13.03229 -12.78636 -11.97691 -11.96878 -11.47037 -11.45643 -11.27525 -11.05489 -10.31196 -9.88026 -9.48230 -9.29507 -8.82712 -8.56818 -7.23972 -6.62057 -4.44640 0.79782 1.29407 1.66176 2.68558 3.00027 3.03701 3.07844 3.26765 3.77289 3.91102 4.16015 4.44748 4.70574 4.76997 4.85191 5.09730 5.21853 5.57139 5.88706 6.10876 6.15688 6.35363 6.49422 6.79988 7.62829 8.04969 8.46269 8.74036 10.46055 Molecular weight = 239.02amu Principal moments of inertia in cm(-1) A = 0.064149 B = 0.005843 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.382119 B = 4790.621616 C = 5217.161813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.105 3.895 3 Si 0.841 3.159 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.544 4.544 8 H 0.127 0.873 9 S 0.136 5.864 10 C 0.233 3.767 11 N -0.488 5.488 12 C 0.046 3.954 13 C -0.050 4.050 14 C -0.147 4.147 15 C 0.094 3.906 16 F -0.137 7.137 17 C -0.121 4.121 18 C 0.012 3.988 19 O -0.206 6.206 20 H 0.279 0.721 21 H 0.143 0.857 22 H 0.143 0.857 23 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.921 -8.129 0.068 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.107 4.107 3 Si 0.664 3.336 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.691 4.691 8 H 0.145 0.855 9 S 0.373 5.627 10 C -0.081 4.081 11 N -0.222 5.222 12 C -0.070 4.070 13 C -0.071 4.071 14 C -0.168 4.168 15 C 0.072 3.928 16 F -0.116 7.116 17 C -0.142 4.142 18 C -0.042 4.042 19 O -0.102 6.102 20 H 0.089 0.911 21 H 0.160 0.840 22 H 0.161 0.839 23 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.815 -6.829 0.069 11.151 hybrid contribution 0.212 -0.512 -0.012 0.555 sum 9.027 -7.341 0.057 11.635 Atomic orbital electron populations 1.69866 1.05715 1.28387 1.44336 1.24652 0.94636 0.98480 0.92936 0.87040 0.81775 0.84198 0.80592 1.18263 1.18410 1.16103 1.22722 0.86503 0.99960 1.59936 0.85536 1.83232 1.12030 0.83470 1.84000 1.29206 0.78065 1.03415 0.97373 1.71386 1.29925 0.96106 1.24833 1.20216 0.89979 0.94187 1.02635 1.20077 1.00428 0.87870 0.98751 1.20856 0.90792 1.00228 1.04874 1.16936 0.87179 0.82824 1.05823 1.91486 1.69847 1.55984 1.94268 1.19386 0.99612 0.87916 1.07247 1.19848 0.95868 0.82791 1.05717 1.84656 1.32715 1.16619 1.76164 0.91065 0.83951 0.83948 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.64 13.96 55.49 0.77 -22.87 14 2 C 0.11 2.79 5.50 -17.48 -0.10 2.69 14 3 Si 0.84 18.31 27.73 -169.99 -4.71 13.60 14 4 H -0.26 -5.52 7.11 56.52 0.40 -5.11 14 5 H -0.26 -5.50 7.11 56.52 0.40 -5.10 14 6 H -0.24 -4.86 6.74 56.52 0.38 -4.48 14 7 C -0.54 -14.66 9.89 30.92 0.31 -14.35 14 8 H 0.13 3.80 7.07 -52.49 -0.37 3.42 14 9 S 0.14 3.09 19.86 -107.50 -2.14 0.95 14 10 C 0.23 5.27 8.34 52.38 0.44 5.71 14 11 N -0.49 -11.43 10.02 -11.42 -0.11 -11.54 14 12 C 0.05 0.91 7.23 -84.69 -0.61 0.30 14 13 C -0.05 -0.78 10.10 -39.24 -0.40 -1.18 14 14 C -0.15 -1.93 10.00 -39.54 -0.40 -2.32 14 15 C 0.09 1.30 7.29 -39.35 -0.29 1.01 14 16 F -0.14 -1.80 17.26 2.25 0.04 -1.76 14 17 C -0.12 -1.83 10.03 -39.48 -0.40 -2.22 14 18 C 0.01 0.23 7.42 -38.66 -0.29 -0.06 14 19 O -0.21 -4.23 10.79 2.27 0.02 -4.21 14 20 H 0.28 7.08 8.31 -40.82 -0.34 6.74 14 21 H 0.14 1.97 8.06 -52.48 -0.42 1.55 14 22 H 0.14 1.40 8.06 -52.48 -0.42 0.98 14 23 H 0.14 1.77 8.06 -52.49 -0.42 1.35 14 LS Contribution 235.94 15.07 3.56 3.56 Total: -1.00 -28.25 235.94 -5.09 -33.34 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -0.80 Total: -0.66 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.73 Total: -10.42 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.66 Total: -34.41 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: 0.02 Total: -4.21 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -4.71 Total: 13.60 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.14 Total: 0.95 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.25 -5.09 -33.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641429708.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.430 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds