Wall clock time and date at job start Mon Mar 30 2020 17:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99785 * 2 1 4 4 H 1.48498 * 109.47303 * 270.00065 * 3 2 1 5 5 H 1.48508 * 109.47130 * 30.00136 * 3 2 1 6 6 H 1.48503 * 109.47068 * 150.00071 * 3 2 1 7 7 C 1.37875 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99545 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00381 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47019 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99714 * 179.97438 * 10 9 7 12 12 O 1.21597 * 120.00084 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00108 * 180.02562 * 11 10 9 14 14 C 1.40093 * 119.99878 * 184.21071 * 13 11 10 15 15 C 1.39099 * 120.49712 * 325.89410 * 14 13 11 16 16 C 1.38637 * 118.39163 * 180.26420 * 15 14 13 17 17 C 1.38149 * 119.28517 * 359.46052 * 16 15 14 18 18 N 1.31944 * 120.94305 * 0.29938 * 17 16 15 19 19 C 1.31953 * 121.75934 * 359.97438 * 18 17 16 20 20 F 1.35104 * 119.69649 * 179.97438 * 19 18 17 21 21 H 0.96997 * 120.00111 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.46631 * 59.99906 * 9 7 2 23 23 H 1.09000 * 109.46908 * 300.00221 * 9 7 2 24 24 H 0.96993 * 119.99832 * 0.02562 * 10 9 7 25 25 H 0.97001 * 119.99568 * 4.20642 * 13 11 10 26 26 H 1.07996 * 120.80926 * 0.02562 * 15 14 13 27 27 H 1.07998 * 120.35431 * 179.73494 * 16 15 14 28 28 H 1.07996 * 119.53122 * 180.27877 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8214 -0.0001 12 8 6.1151 -1.8971 0.0004 13 7 5.7743 -4.0921 -0.0008 14 6 7.1486 -4.3491 0.0882 15 6 8.0676 -3.4865 -0.5002 16 6 9.4168 -3.7858 -0.3900 17 6 9.8039 -4.9156 0.3045 18 7 8.9088 -5.7125 0.8565 19 6 7.6149 -5.4682 0.7713 20 9 6.7346 -6.3127 1.3520 21 1 -0.4850 0.8400 0.0004 22 1 3.8745 -0.6807 0.8906 23 1 3.8753 -0.6795 -0.8894 24 1 3.3696 -3.3124 -0.0009 25 1 5.1461 -4.8286 -0.0628 26 1 7.7381 -2.6071 -1.0333 27 1 10.1575 -3.1403 -0.8385 28 1 10.8540 -5.1501 0.3966 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466948310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:45:12 Heat of formation + Delta-G solvation = -30.163054 kcal Electronic energy + Delta-G solvation = -16149.401658 eV Core-core repulsion = 13115.464600 eV Total energy + Delta-G solvation = -3033.937058 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.06099 -40.66942 -39.23127 -35.28319 -34.39855 -32.58050 -32.03044 -29.99701 -27.74264 -24.24965 -23.45364 -22.09046 -20.62697 -18.85277 -18.07777 -17.76392 -16.87586 -16.46516 -16.05500 -15.31068 -15.08545 -14.72279 -14.34711 -13.72776 -13.44065 -13.27451 -13.21794 -12.72121 -12.47396 -12.39645 -11.08795 -11.04559 -10.79080 -10.23998 -10.02742 -9.82295 -9.57917 -9.45129 -8.87478 -8.54502 -8.13169 -6.27694 -4.31027 0.76162 1.04303 2.73164 3.21878 3.29568 3.29952 3.36746 3.44104 3.64105 4.27171 4.35661 4.52690 4.77199 4.89399 5.07423 5.16026 5.48257 5.84538 6.00035 6.13913 6.52078 6.67258 6.96057 6.99711 7.13375 7.33129 7.49238 8.12601 8.42844 8.68603 8.84541 9.31094 10.84061 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.047645 B = 0.005146 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.533643 B = 5440.304759 C = 5924.484856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.237 3.763 10 N -0.710 5.710 11 C 0.695 3.305 12 O -0.586 6.586 13 N -0.686 5.686 14 C 0.114 3.886 15 C -0.057 4.057 16 C -0.161 4.161 17 C 0.104 3.896 18 N -0.496 5.496 19 C 0.271 3.729 20 F -0.113 7.113 21 H 0.269 0.731 22 H 0.027 0.973 23 H 0.023 0.977 24 H 0.397 0.603 25 H 0.411 0.589 26 H 0.165 0.835 27 H 0.146 0.854 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.878 -8.930 -1.527 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.098 0.902 9 C 0.115 3.885 10 N -0.361 5.361 11 C 0.395 3.605 12 O -0.464 6.464 13 N -0.335 5.335 14 C 0.014 3.986 15 C -0.085 4.085 16 C -0.181 4.181 17 C -0.054 4.054 18 N -0.210 5.210 19 C 0.114 3.886 20 F -0.092 7.092 21 H 0.079 0.921 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.231 0.769 25 H 0.247 0.753 26 H 0.182 0.818 27 H 0.163 0.837 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 16.494 -8.635 -1.038 18.647 hybrid contribution -0.809 0.679 -0.295 1.097 sum 15.685 -7.956 -1.333 17.638 Atomic orbital electron populations 1.69872 1.06219 1.27551 1.49055 1.24776 0.94804 0.99175 0.93781 0.86812 0.80581 0.83179 0.79078 1.19789 1.20826 1.18452 1.21051 0.88314 0.95341 1.53759 0.90163 1.19475 0.95148 0.76893 0.97003 1.45465 1.03159 1.11746 1.75740 1.16079 0.84125 0.81837 0.78429 1.90861 1.54923 1.42637 1.57978 1.42629 1.04766 1.08534 1.77542 1.18263 0.85092 0.96235 0.99050 1.21880 0.91665 0.99312 0.95651 1.22156 0.96362 0.98598 1.00996 1.22415 0.98336 0.90528 0.94084 1.66968 1.00195 1.32621 1.21229 1.17933 0.85642 0.89431 0.95625 1.91606 1.65537 1.70056 1.82026 0.92143 0.95527 0.95947 0.76937 0.75317 0.81780 0.83658 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.96 55.43 0.77 -25.16 15 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 15 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 15 7 C -0.55 -14.57 9.83 -34.44 -0.34 -14.91 15 8 H 0.08 2.23 7.84 -52.48 -0.41 1.81 15 9 C 0.24 5.60 4.50 -5.19 -0.02 5.58 15 10 N -0.71 -13.76 5.55 -66.41 -0.37 -14.12 15 11 C 0.70 12.84 8.42 -86.92 -0.73 12.11 15 12 O -0.59 -12.49 13.78 5.28 0.07 -12.42 15 13 N -0.69 -9.94 5.25 -14.06 -0.07 -10.01 15 14 C 0.11 1.62 6.35 -83.42 -0.53 1.09 15 15 C -0.06 -0.75 8.81 -39.12 -0.34 -1.10 15 16 C -0.16 -1.60 10.10 -39.47 -0.40 -2.00 15 17 C 0.10 1.05 11.17 -17.54 -0.20 0.85 15 18 N -0.50 -6.55 10.37 -13.45 -0.14 -6.69 15 19 C 0.27 3.78 8.43 -17.16 -0.14 3.64 15 20 F -0.11 -1.58 16.99 2.25 0.04 -1.54 15 21 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 22 H 0.03 0.67 7.20 -51.93 -0.37 0.29 15 23 H 0.02 0.55 7.57 -51.93 -0.39 0.16 15 24 H 0.40 6.69 8.34 -40.82 -0.34 6.35 15 25 H 0.41 4.78 8.69 -40.82 -0.35 4.43 15 26 H 0.16 2.39 6.26 -52.49 -0.33 2.06 15 27 H 0.15 0.99 8.06 -52.49 -0.42 0.57 15 28 H 0.17 1.05 8.06 -52.49 -0.42 0.63 15 LS Contribution 257.53 15.07 3.88 3.88 Total: -1.00 -31.68 257.53 -5.50 -37.19 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.21 Total: 5.34 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -2.80 Total: 7.34 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.19 Total: -55.98 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.68 -5.50 -37.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466948310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.025 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds