Wall clock time and date at job start Mon Mar 30 2020 17:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47353 * 300.00033 * 3 2 1 6 6 H 1.48499 * 109.47342 * 60.00047 * 3 2 1 7 7 C 1.38812 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99185 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.50701 * 109.47209 * 274.99978 * 10 9 7 13 13 O 1.20828 * 119.99823 * 359.97438 * 12 10 9 14 14 O 1.34224 * 120.00059 * 179.97438 * 12 10 9 15 15 C 1.50703 * 109.47155 * 154.99975 * 10 9 7 16 16 C 1.38245 * 119.97223 * 39.72374 * 15 10 9 17 17 C 1.38199 * 120.02281 * 179.76964 * 16 15 10 18 18 C 1.38457 * 119.97562 * 0.50483 * 17 16 15 19 19 F 1.35100 * 120.02739 * 179.77231 * 18 17 16 20 20 C 1.38462 * 119.94864 * 359.74801 * 18 17 16 21 21 C 1.38199 * 119.97087 * 0.02562 * 20 18 17 22 22 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 23 23 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 24 24 H 0.96701 * 117.00226 * 179.97438 * 14 12 10 25 25 H 1.07996 * 119.98979 * 0.02562 * 16 15 10 26 26 H 1.08002 * 120.01181 * 180.25478 * 17 16 15 27 27 H 1.07994 * 120.01534 * 179.97438 * 20 18 17 28 28 H 1.07998 * 119.98345 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5889 12 6 2.4164 -4.0299 -1.4160 13 8 2.0928 -3.3101 -2.3309 14 8 3.0952 -5.1618 -1.6602 15 6 1.1940 -4.7357 0.5999 16 6 -0.1573 -4.7789 0.3112 17 6 -0.9497 -5.7707 0.8575 18 6 -0.3917 -6.7150 1.7026 19 9 -1.1663 -7.6822 2.2408 20 6 0.9608 -6.6675 1.9951 21 6 1.7521 -5.6776 1.4439 22 1 -0.4849 0.8400 0.0004 23 1 0.3555 -2.3880 -0.0005 24 1 3.3020 -5.3591 -2.5841 25 1 -0.5930 -4.0399 -0.3447 26 1 -2.0045 -5.8067 0.6286 27 1 1.3970 -7.4033 2.6544 28 1 2.8071 -5.6407 1.6717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:45:39 Heat of formation + Delta-G solvation = -96.217551 kcal Electronic energy + Delta-G solvation = -16524.573314 eV Core-core repulsion = 13455.479166 eV Total energy + Delta-G solvation = -3069.094147 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.74859 -39.80802 -38.54119 -35.57805 -34.64101 -32.11946 -30.97640 -29.60095 -26.41717 -23.74720 -22.69501 -22.11530 -20.10079 -17.86543 -17.44262 -17.23111 -16.12617 -15.88055 -15.56176 -15.38947 -14.75477 -14.34048 -13.96411 -13.48282 -13.34151 -12.97302 -12.85466 -12.36866 -11.90080 -11.41557 -11.00715 -10.96095 -10.82900 -10.71656 -10.18506 -10.01249 -9.93242 -9.16487 -8.90855 -8.34423 -7.30817 -5.96085 -3.27157 1.29538 1.43752 3.01705 3.34661 3.42160 3.44428 3.64199 3.90694 4.41643 4.47381 4.90745 5.01249 5.06655 5.40345 5.46219 5.50487 5.74188 5.92424 6.09254 6.15624 6.21961 6.28881 6.45491 6.77651 7.05701 7.17182 7.53580 8.17238 8.68679 9.31601 9.74811 10.10658 11.25223 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.007079 C = 0.006192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.750337 B = 3954.611360 C = 4520.528705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.001 3.999 3 Si 0.915 3.085 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.254 4.254 8 H 0.076 0.924 9 N -0.679 5.679 10 C 0.227 3.773 11 H 0.099 0.901 12 C 0.434 3.566 13 O -0.496 6.496 14 O -0.533 6.533 15 C -0.080 4.080 16 C -0.073 4.073 17 C -0.152 4.152 18 C 0.088 3.912 19 F -0.146 7.146 20 C -0.156 4.156 21 C -0.072 4.072 22 H 0.260 0.740 23 H 0.393 0.607 24 H 0.387 0.613 25 H 0.137 0.863 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 -12.833 2.426 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.196 4.196 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.111 3.889 11 H 0.117 0.883 12 C 0.270 3.730 13 O -0.381 6.381 14 O -0.344 6.344 15 C -0.081 4.081 16 C -0.092 4.092 17 C -0.171 4.171 18 C 0.069 3.931 19 F -0.125 7.125 20 C -0.175 4.175 21 C -0.091 4.091 22 H 0.070 0.930 23 H 0.229 0.771 24 H 0.244 0.756 25 H 0.155 0.845 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.255 -12.348 2.610 12.821 hybrid contribution 0.071 0.666 -0.772 1.022 sum 2.326 -11.682 1.838 12.052 Atomic orbital electron populations 1.69671 1.05310 1.26310 1.55421 1.24814 0.95578 0.98092 1.01162 0.86017 0.78893 0.83273 0.77308 1.20258 1.21516 1.21518 1.19257 0.91258 0.83388 1.44559 0.90591 1.42466 1.06206 0.98678 1.84436 1.18804 0.96004 0.86085 0.88038 0.88329 1.26786 0.73622 0.76948 0.95643 1.90671 1.50185 1.50643 1.46569 1.84712 1.70638 1.43894 1.35130 1.19891 0.94292 0.96029 0.97938 1.20986 0.93094 0.96762 0.98349 1.21086 1.01060 0.95670 0.99260 1.17714 0.89210 0.88676 0.97537 1.91464 1.75026 1.61407 1.84597 1.21028 0.92075 1.01165 1.03213 1.20841 1.00036 0.92932 0.95256 0.93039 0.77083 0.75620 0.84506 0.84870 0.84927 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 13.06 55.49 0.72 -26.30 15 2 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 15 3 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 15 7 C -0.25 -6.88 9.81 -15.06 -0.15 -7.03 15 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 15 9 N -0.68 -16.54 4.59 -55.68 -0.26 -16.79 15 10 C 0.23 4.41 3.00 -70.23 -0.21 4.20 15 11 H 0.10 1.79 7.94 -51.93 -0.41 1.37 15 12 C 0.43 8.55 7.65 36.01 0.28 8.82 15 13 O -0.50 -11.88 17.10 -18.75 -0.32 -12.20 15 14 O -0.53 -8.16 13.34 -39.24 -0.52 -8.68 15 15 C -0.08 -1.34 4.88 -104.62 -0.51 -1.85 15 16 C -0.07 -1.22 9.05 -39.59 -0.36 -1.58 15 17 C -0.15 -2.22 10.03 -39.52 -0.40 -2.62 15 18 C 0.09 1.25 7.30 -39.42 -0.29 0.96 15 19 F -0.15 -2.06 17.27 2.25 0.04 -2.02 15 20 C -0.16 -2.03 10.03 -39.51 -0.40 -2.42 15 21 C -0.07 -1.00 9.67 -39.60 -0.38 -1.38 15 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.39 10.02 6.05 -40.82 -0.25 9.77 15 24 H 0.39 4.36 9.10 45.56 0.41 4.77 15 25 H 0.14 2.44 6.90 -52.49 -0.36 2.08 15 26 H 0.13 1.69 8.06 -52.49 -0.42 1.26 15 27 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.14 1.55 8.04 -52.49 -0.42 1.12 15 LS Contribution 263.42 15.07 3.97 3.97 Total: -1.00 -31.95 263.42 -5.32 -37.27 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -1.42 Total: 10.78 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.51 Total: -2.95 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.47 Total: -43.09 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.84 Total: -20.88 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.95 -5.32 -37.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.950 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds