Wall clock time and date at job start Mon Mar 30 2020 17:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47596 * 2 1 4 4 C 1.52990 * 109.47492 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47588 * 183.82822 * 4 3 2 6 6 N 1.46502 * 115.55000 * 279.98189 * 5 4 3 7 7 C 1.34781 * 119.99524 * 319.26069 * 6 5 4 8 8 O 1.21272 * 120.00012 * 354.39583 * 7 6 5 9 9 C 1.50703 * 119.99779 * 174.39201 * 7 6 5 10 10 H 1.09004 * 109.47076 * 60.00213 * 9 7 6 11 11 C 1.52999 * 109.47467 * 300.00213 * 9 7 6 12 12 C 1.50699 * 109.47269 * 180.02562 * 9 7 6 13 13 H 1.08002 * 119.99885 * 0.02562 * 12 9 7 14 14 C 1.37875 * 120.00399 * 180.02562 * 12 9 7 15 15 N 1.31514 * 119.99595 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 120.00097 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47218 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46744 * 120.00385 * 16 14 12 19 19 H 1.48500 * 109.47125 * 239.99695 * 16 14 12 20 20 C 1.53006 * 117.49821 * 65.64438 * 5 4 3 21 21 C 1.53009 * 60.02868 * 107.48448 * 20 5 4 22 22 H 1.08999 * 109.47372 * 59.99708 * 1 2 3 23 23 H 1.09001 * 109.47799 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47012 * 299.99610 * 1 2 3 25 25 H 1.09005 * 109.47100 * 239.99904 * 2 1 3 26 26 H 1.09005 * 109.47427 * 120.00718 * 2 1 3 27 27 H 1.09000 * 109.46622 * 60.00151 * 3 2 1 28 28 H 1.08999 * 109.46999 * 300.00521 * 3 2 1 29 29 H 1.09004 * 109.47368 * 63.82471 * 4 3 2 30 30 H 1.09013 * 109.47037 * 303.82644 * 4 3 2 31 31 H 0.96992 * 120.00333 * 139.25829 * 6 5 4 32 32 H 1.08999 * 109.47184 * 179.97438 * 11 9 7 33 33 H 1.09004 * 109.46972 * 300.00063 * 11 9 7 34 34 H 1.08999 * 109.47022 * 59.99551 * 11 9 7 35 35 H 0.97003 * 119.99919 * 180.02562 * 15 14 12 36 36 H 1.09003 * 117.49856 * 214.98199 * 20 5 4 37 37 H 1.08999 * 117.49620 * 359.97438 * 20 5 4 38 38 H 1.08997 * 117.49601 * 107.50318 * 21 20 5 39 39 H 1.08998 * 117.49258 * 252.52162 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8816 0.0957 6 7 4.0743 3.6393 -1.1582 7 6 4.4503 3.0436 -2.3072 8 8 4.8896 1.9133 -2.2888 9 6 4.3247 3.7819 -3.6150 10 1 4.9276 4.6893 -3.5792 11 6 2.8594 4.1523 -3.8529 12 6 4.8083 2.9008 -4.7378 13 1 5.1700 1.9055 -4.5258 14 6 4.7890 3.3652 -6.0359 15 7 4.3490 4.5774 -6.2940 16 14 5.3891 2.2733 -7.4275 17 1 5.8298 0.9666 -6.8767 18 1 4.2850 2.0545 -8.3963 19 1 6.5288 2.9305 -8.1162 20 6 3.7886 3.6496 1.3865 21 6 5.2095 3.1662 1.0890 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 1.6768 1.9562 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9330 0.9892 -0.9232 30 1 3.9337 0.8701 0.8529 31 1 3.7998 4.5696 -1.1615 32 1 2.7687 4.6868 -4.7986 33 1 2.2565 3.2449 -3.8886 34 1 2.5092 4.7894 -3.0408 35 1 4.3351 4.9041 -7.2073 36 1 3.5928 4.7187 1.3028 37 1 3.2329 3.1296 2.1668 38 1 5.9484 3.9171 0.8098 39 1 5.5885 2.3279 1.6736 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889524607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:50 Heat of formation + Delta-G solvation = -38.685205 kcal Electronic energy + Delta-G solvation = -17683.228702 eV Core-core repulsion = 15011.755838 eV Total energy + Delta-G solvation = -2671.472864 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.46499 -37.11111 -34.83619 -33.70538 -32.15687 -30.13916 -29.61429 -25.11278 -24.31195 -22.92259 -22.38012 -20.80668 -20.01320 -18.76463 -16.46486 -16.06034 -15.60711 -15.11147 -14.56592 -14.42769 -13.87823 -13.71827 -13.15644 -12.76998 -12.69050 -12.44900 -12.08904 -11.51640 -11.49592 -11.33108 -11.12300 -10.97936 -10.83678 -10.69671 -10.64064 -10.36470 -10.30960 -10.25524 -9.93973 -9.87651 -8.94167 -8.46071 -8.21767 -8.17735 -6.01428 -4.04194 3.33387 3.40904 3.48967 3.59960 3.82923 4.10250 4.49023 4.75995 4.99133 5.08828 5.16910 5.27255 5.31768 5.33442 5.59816 5.67537 5.73095 5.91292 5.94058 5.96284 6.00695 6.12592 6.20356 6.25570 6.34362 6.38734 6.54886 6.64482 6.77590 6.85897 6.96018 7.26635 7.50244 7.77646 8.02244 8.19159 8.49821 9.05418 9.30179 9.61516 11.06329 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.006589 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.490255 B = 4248.363726 C = 4791.647407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.111 4.111 4 C -0.106 4.106 5 C 0.122 3.878 6 N -0.715 5.715 7 C 0.524 3.476 8 O -0.537 6.537 9 C 0.028 3.972 10 H 0.050 0.950 11 C -0.131 4.131 12 C -0.498 4.498 13 H 0.075 0.925 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.183 4.183 21 C -0.191 4.191 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.396 0.604 32 H 0.092 0.908 33 H 0.030 0.970 34 H 0.011 0.989 35 H 0.260 0.740 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 -1.901 13.699 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.144 4.144 5 C 0.033 3.967 6 N -0.368 5.368 7 C 0.315 3.685 8 O -0.413 6.413 9 C 0.007 3.993 10 H 0.068 0.932 11 C -0.189 4.189 12 C -0.536 4.536 13 H 0.093 0.907 14 C -0.143 4.143 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.221 4.221 21 C -0.230 4.230 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.230 0.770 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.757 -2.626 13.515 14.566 hybrid contribution 0.180 0.162 -0.650 0.693 sum -4.578 -2.465 12.865 13.876 Atomic orbital electron populations 1.21764 0.96215 1.01176 1.01659 1.21519 0.95491 0.97297 1.01890 1.21513 0.95381 0.96277 1.01728 1.21592 0.95024 0.92642 1.05122 1.20614 1.01263 0.93293 0.81486 1.45717 1.70475 1.14449 1.06109 1.21932 0.74168 0.87111 0.85314 1.90417 1.44158 1.19814 1.86875 1.18886 0.95696 0.96547 0.88135 0.93197 1.21726 0.95851 0.99278 1.02018 1.21185 1.41080 1.01231 0.90120 0.90694 1.24953 0.95367 0.95195 0.98811 1.69885 1.47411 1.16475 1.19931 0.86415 0.78325 0.80909 0.81720 1.19555 1.21084 1.21080 1.23261 0.99478 1.00337 0.98983 1.23463 0.91989 1.03610 1.03951 0.92665 0.93109 0.93096 0.91804 0.92485 0.92707 0.91910 0.87150 0.92038 0.76963 0.88923 0.95032 0.96958 0.93066 0.88810 0.88372 0.88849 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.56 5.93 -26.73 -0.16 -1.72 16 3 C -0.11 -1.55 5.15 -26.74 -0.14 -1.68 16 4 C -0.11 -1.66 4.98 -26.74 -0.13 -1.79 16 5 C 0.12 1.88 2.19 -131.78 -0.29 1.59 16 6 N -0.72 -12.67 5.42 -47.57 -0.26 -12.93 16 7 C 0.52 11.86 6.92 -10.98 -0.08 11.79 16 8 O -0.54 -13.64 12.85 5.56 0.07 -13.57 16 9 C 0.03 0.71 2.64 -92.92 -0.24 0.46 16 10 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 11 C -0.13 -3.01 8.87 37.16 0.33 -2.68 16 12 C -0.50 -14.12 8.37 -34.44 -0.29 -14.41 16 13 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 14 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 15 N -0.90 -25.30 11.32 55.43 0.63 -24.67 16 16 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.18 -2.17 9.66 -26.72 -0.26 -2.43 16 21 C -0.19 -2.59 10.11 -26.69 -0.27 -2.86 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.67 7.57 -51.93 -0.39 0.28 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.11 2.17 5.24 -51.93 -0.27 1.90 16 30 H 0.06 0.85 7.95 -51.92 -0.41 0.44 16 31 H 0.40 6.17 8.38 -40.82 -0.34 5.82 16 32 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.01 0.23 7.70 -51.93 -0.40 -0.17 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.02 7.95 -51.93 -0.41 0.61 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -29.99 315.93 -7.76 -37.74 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.68 Total: 5.31 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.25 Total: -13.52 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.37 Total: -37.60 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.07 Total: -13.57 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.99 -7.76 -37.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889524607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.941 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds