Wall clock time and date at job start Mon Mar 30 2020 17:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47225 * 2 1 4 4 C 1.53003 * 109.47408 * 120.00234 * 2 1 3 5 5 N 1.46500 * 109.47499 * 174.24733 * 4 2 1 6 6 C 1.46493 * 119.99844 * 276.60265 * 5 4 2 7 7 C 1.50704 * 109.47212 * 269.99973 * 6 5 4 8 8 H 1.07997 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99664 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00241 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99382 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47174 * 90.00308 * 11 9 7 13 13 H 1.48506 * 109.47080 * 210.00257 * 11 9 7 14 14 H 1.48495 * 109.47359 * 329.99858 * 11 9 7 15 15 C 1.34773 * 120.00052 * 96.60292 * 5 4 2 16 16 O 1.21283 * 120.00358 * 185.42126 * 15 5 4 17 17 C 1.50705 * 120.00075 * 5.41640 * 15 5 4 18 18 H 1.09001 * 115.54977 * 321.17806 * 17 15 5 19 19 C 1.53001 * 117.51858 * 106.88023 * 17 15 5 20 20 C 1.52994 * 59.99981 * 107.48049 * 19 17 15 21 21 H 1.08996 * 117.52106 * 252.51950 * 20 19 17 22 22 C 1.53007 * 117.49967 * 107.48953 * 20 19 17 23 23 H 1.09007 * 109.47235 * 299.99817 * 1 2 3 24 24 H 1.09004 * 109.47133 * 60.00076 * 1 2 3 25 25 H 1.09004 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47235 * 240.00183 * 2 1 3 27 27 H 1.08992 * 109.47056 * 304.57616 * 3 2 1 28 28 H 1.09003 * 109.46903 * 64.57176 * 3 2 1 29 29 H 1.08997 * 109.46997 * 184.57136 * 3 2 1 30 30 H 1.08995 * 109.46888 * 54.24290 * 4 2 1 31 31 H 1.09000 * 109.46843 * 294.24898 * 4 2 1 32 32 H 1.09004 * 109.47106 * 30.00319 * 6 5 4 33 33 H 1.09001 * 109.46868 * 149.99775 * 6 5 4 34 34 H 0.97000 * 119.99541 * 179.97438 * 10 9 7 35 35 H 1.09006 * 117.49716 * 359.97438 * 19 17 15 36 36 H 1.09001 * 117.49884 * 214.97748 * 19 17 15 37 37 H 1.09003 * 109.46694 * 351.37878 * 22 20 19 38 38 H 1.09000 * 109.47102 * 231.38238 * 22 20 19 39 39 H 1.08995 * 109.46816 * 111.37290 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4984 -0.8424 1.1820 6 6 4.1083 -1.9412 0.4292 7 6 4.3042 -3.1260 1.3397 8 1 4.0048 -3.0663 2.3756 9 6 4.8666 -4.2858 0.8503 10 7 5.2317 -4.3584 -0.4111 11 14 5.1101 -5.7542 1.9791 12 1 3.9019 -6.6165 1.9370 13 1 6.2909 -6.5342 1.5290 14 1 5.3311 -5.2791 3.3685 15 6 4.2791 0.0571 1.8128 16 8 5.4836 0.0157 1.6771 17 6 3.6553 1.1147 2.6867 18 1 2.7235 1.5415 2.3158 19 6 3.8083 0.9607 4.2013 20 6 4.5983 2.0399 3.4584 21 1 5.6698 1.8838 3.3339 22 6 4.1612 3.4936 3.6503 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6112 1.9794 -0.8461 28 1 1.7450 1.9321 0.9281 29 1 3.1268 1.4436 -0.0819 30 1 1.5950 -1.7148 1.3022 31 1 1.7632 -0.1515 2.1362 32 1 3.4551 -2.2219 -0.3971 33 1 5.0734 -1.6210 0.0367 34 1 5.6277 -5.1743 -0.7551 35 1 4.3598 0.0941 4.5659 36 1 2.9770 1.2862 4.8267 37 1 3.2192 3.5204 4.1982 38 1 4.0285 3.9647 2.6763 39 1 4.9243 4.0311 4.2131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:40 Heat of formation + Delta-G solvation = -30.863222 kcal Electronic energy + Delta-G solvation = -17923.299145 eV Core-core repulsion = 15252.165468 eV Total energy + Delta-G solvation = -2671.133677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.56950 -36.82854 -35.95863 -33.58251 -32.21746 -28.85971 -27.54689 -27.01755 -25.58465 -23.99821 -21.88085 -20.42419 -20.15863 -18.08866 -16.78620 -16.38227 -15.44320 -14.71289 -14.63238 -14.19914 -13.88156 -13.77961 -13.15905 -12.91726 -12.76701 -12.29304 -12.21688 -12.16754 -11.68232 -11.50676 -11.27990 -11.22195 -10.97809 -10.88011 -10.68845 -10.53841 -10.38733 -10.09871 -10.01978 -9.73368 -9.57331 -8.82076 -8.41515 -7.56796 -6.02186 -4.06929 3.26142 3.30858 3.37475 3.41999 3.88974 4.21029 4.45807 4.87340 5.01219 5.08210 5.14334 5.19176 5.31320 5.34989 5.44093 5.49939 5.72432 5.74922 5.78740 5.80636 5.88219 5.90473 5.98242 6.08042 6.11983 6.22937 6.26528 6.31198 6.48647 6.52943 6.61060 7.13261 7.49887 7.61488 7.95222 8.26846 8.50976 8.93354 9.17806 9.58317 11.05758 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.007960 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.483828 B = 3516.675576 C = 4365.925167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.146 4.146 4 C 0.117 3.883 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.537 3.463 16 O -0.546 6.546 17 C -0.190 4.190 18 H 0.123 0.877 19 C -0.154 4.154 20 C -0.131 4.131 21 H 0.115 0.885 22 C -0.119 4.119 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 12.216 4.827 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.203 4.203 4 C -0.007 4.007 5 N -0.322 5.322 6 C 0.127 3.873 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.324 3.676 16 O -0.424 6.424 17 C -0.211 4.211 18 H 0.140 0.860 19 C -0.191 4.191 20 C -0.150 4.150 21 H 0.133 0.867 22 C -0.177 4.177 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.471 12.034 4.596 15.417 hybrid contribution 0.013 -1.023 0.467 1.124 sum -8.458 11.011 5.062 14.779 Atomic orbital electron populations 1.21757 0.95088 1.01810 1.01300 1.21572 0.95349 0.96579 1.00241 1.21925 1.01607 0.95940 1.00830 1.21517 0.81740 1.00935 0.96543 1.48075 1.05268 1.27755 1.51128 1.19248 0.94437 0.82593 0.91028 1.21456 1.40919 0.97372 0.96746 0.92506 1.24934 0.95275 0.98722 0.95180 1.69936 1.42014 1.27861 1.13550 0.86511 0.77682 0.82337 0.80980 1.20635 1.21090 1.19932 1.19389 0.86669 0.81415 0.80144 1.90643 1.14637 1.73671 1.63475 1.22638 1.02407 1.01608 0.94482 0.85982 1.23033 1.02662 1.01431 0.92004 1.22317 0.98701 0.91498 1.02439 0.86743 1.21363 1.00867 0.93854 1.01571 0.92931 0.92877 0.92460 0.90487 0.93061 0.92954 0.92438 0.90386 0.91321 0.95084 0.93885 0.92752 0.88399 0.88435 0.92692 0.92212 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 37.15 0.34 -1.27 16 2 C -0.12 -1.69 3.11 -90.62 -0.28 -1.98 16 3 C -0.15 -1.94 7.83 37.16 0.29 -1.65 16 4 C 0.12 1.96 4.86 -4.04 -0.02 1.94 16 5 N -0.59 -12.83 2.26 -175.06 -0.40 -13.22 16 6 C 0.25 6.56 5.22 -5.20 -0.03 6.53 16 7 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 11 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.54 11.61 6.23 -10.98 -0.07 11.54 16 16 O -0.55 -14.27 15.82 5.55 0.09 -14.18 16 17 C -0.19 -3.04 4.11 -91.77 -0.38 -3.42 16 18 H 0.12 1.67 4.39 -51.93 -0.23 1.44 16 19 C -0.15 -2.18 9.88 -26.73 -0.26 -2.44 16 20 C -0.13 -1.88 5.92 -90.62 -0.54 -2.42 16 21 H 0.11 1.89 7.68 -51.93 -0.40 1.49 16 22 C -0.12 -1.27 10.19 37.16 0.38 -0.90 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.27 8.02 -51.93 -0.42 0.85 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.61 6.26 -51.93 -0.33 0.28 16 29 H 0.06 0.91 6.96 -51.93 -0.36 0.55 16 30 H 0.08 1.37 8.12 -51.93 -0.42 0.94 16 31 H 0.07 0.99 6.14 -51.93 -0.32 0.68 16 32 H 0.03 0.84 7.95 -51.93 -0.41 0.42 16 33 H 0.04 1.30 7.35 -51.93 -0.38 0.92 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 37 H 0.05 0.51 7.90 -51.93 -0.41 0.10 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -32.57 315.53 -7.42 -39.98 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.60 Total: -0.37 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.98 Total: -7.86 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.34 Total: -39.40 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.18 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.57 -7.42 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.120 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds