Wall clock time and date at job start Mon Mar 30 2020 17:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47225 * 2 1 4 4 C 1.53003 * 109.47408 * 120.00234 * 2 1 3 5 5 N 1.46500 * 109.47499 * 174.24733 * 4 2 1 6 6 C 1.46493 * 119.99844 * 276.60265 * 5 4 2 7 7 C 1.50704 * 109.47212 * 269.99973 * 6 5 4 8 8 H 1.07997 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99664 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00241 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99382 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47174 * 90.00308 * 11 9 7 13 13 H 1.48506 * 109.47080 * 210.00257 * 11 9 7 14 14 H 1.48495 * 109.47359 * 329.99858 * 11 9 7 15 15 C 1.34773 * 120.00052 * 96.60292 * 5 4 2 16 16 O 1.21283 * 120.00358 * 185.42126 * 15 5 4 17 17 C 1.50705 * 120.00075 * 5.41640 * 15 5 4 18 18 H 1.09001 * 115.54977 * 321.17806 * 17 15 5 19 19 C 1.53001 * 117.51858 * 106.88023 * 17 15 5 20 20 C 1.52994 * 59.99981 * 107.48049 * 19 17 15 21 21 H 1.08996 * 117.52106 * 252.51950 * 20 19 17 22 22 C 1.53007 * 117.49967 * 107.48953 * 20 19 17 23 23 H 1.09007 * 109.47235 * 299.99817 * 1 2 3 24 24 H 1.09004 * 109.47133 * 60.00076 * 1 2 3 25 25 H 1.09004 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47235 * 240.00183 * 2 1 3 27 27 H 1.08992 * 109.47056 * 304.57616 * 3 2 1 28 28 H 1.09003 * 109.46903 * 64.57176 * 3 2 1 29 29 H 1.08997 * 109.46997 * 184.57136 * 3 2 1 30 30 H 1.08995 * 109.46888 * 54.24290 * 4 2 1 31 31 H 1.09000 * 109.46843 * 294.24898 * 4 2 1 32 32 H 1.09004 * 109.47106 * 30.00319 * 6 5 4 33 33 H 1.09001 * 109.46868 * 149.99775 * 6 5 4 34 34 H 0.97000 * 119.99541 * 179.97438 * 10 9 7 35 35 H 1.09006 * 117.49716 * 359.97438 * 19 17 15 36 36 H 1.09001 * 117.49884 * 214.97748 * 19 17 15 37 37 H 1.09003 * 109.46694 * 351.37878 * 22 20 19 38 38 H 1.09000 * 109.47102 * 231.38238 * 22 20 19 39 39 H 1.08995 * 109.46816 * 111.37290 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4984 -0.8424 1.1820 6 6 4.1083 -1.9412 0.4292 7 6 4.3042 -3.1260 1.3397 8 1 4.0048 -3.0663 2.3756 9 6 4.8666 -4.2858 0.8503 10 7 5.2317 -4.3584 -0.4111 11 14 5.1101 -5.7542 1.9791 12 1 3.9019 -6.6165 1.9370 13 1 6.2909 -6.5342 1.5290 14 1 5.3311 -5.2791 3.3685 15 6 4.2791 0.0571 1.8128 16 8 5.4836 0.0157 1.6771 17 6 3.6553 1.1147 2.6867 18 1 2.7235 1.5415 2.3158 19 6 3.8083 0.9607 4.2013 20 6 4.5983 2.0399 3.4584 21 1 5.6698 1.8838 3.3339 22 6 4.1612 3.4936 3.6503 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6112 1.9794 -0.8461 28 1 1.7450 1.9321 0.9281 29 1 3.1268 1.4436 -0.0819 30 1 1.5950 -1.7148 1.3022 31 1 1.7632 -0.1515 2.1362 32 1 3.4551 -2.2219 -0.3971 33 1 5.0734 -1.6210 0.0367 34 1 5.6277 -5.1743 -0.7551 35 1 4.3598 0.0941 4.5659 36 1 2.9770 1.2862 4.8267 37 1 3.2192 3.5204 4.1982 38 1 4.0285 3.9647 2.6763 39 1 4.9243 4.0311 4.2131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:40 Heat of formation + Delta-G solvation = -50.629040 kcal Electronic energy + Delta-G solvation = -17924.156255 eV Core-core repulsion = 15252.165468 eV Total energy + Delta-G solvation = -2671.990787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15720 -38.15557 -37.45615 -35.45286 -34.12878 -30.24167 -29.15222 -28.09297 -26.96905 -25.84401 -23.52891 -21.60209 -21.40522 -19.63896 -18.59705 -18.30017 -17.21218 -16.41925 -16.23746 -15.60031 -15.23917 -15.02786 -14.49637 -14.25803 -14.14014 -13.81700 -13.64589 -13.33423 -13.15808 -12.91401 -12.79253 -12.60868 -12.55871 -12.36003 -12.24088 -12.15799 -11.83677 -11.65079 -11.55723 -11.21881 -10.86738 -10.67116 -10.56878 -9.40938 -8.25313 -6.41275 1.33444 1.36909 1.47184 1.68742 2.25319 2.41620 2.91327 3.03506 3.62673 3.80740 3.89818 3.96046 4.03925 4.21543 4.26077 4.44783 4.52448 4.69777 4.74198 4.80790 4.88085 4.91848 4.97311 5.00002 5.05793 5.06647 5.13484 5.19883 5.24870 5.28004 5.40952 5.47690 5.49745 5.56388 5.85050 6.03340 6.66812 6.79992 7.24846 7.47886 8.81846 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.007960 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.483828 B = 3516.675576 C = 4365.925167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C -0.141 4.141 4 C 0.112 3.888 5 N -0.596 5.596 6 C 0.263 3.737 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.970 3.030 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.272 1.272 15 C 0.526 3.474 16 O -0.607 6.607 17 C -0.197 4.197 18 H 0.155 0.845 19 C -0.139 4.139 20 C -0.129 4.129 21 H 0.081 0.919 22 C -0.112 4.112 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.022 0.978 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.019 0.981 33 H -0.008 1.008 34 H 0.268 0.732 35 H 0.072 0.928 36 H 0.143 0.857 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 13.436 6.913 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 C -0.198 4.198 4 C -0.011 4.011 5 N -0.325 5.325 6 C 0.142 3.858 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.794 3.206 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.197 1.197 15 C 0.316 3.684 16 O -0.490 6.490 17 C -0.217 4.217 18 H 0.172 0.828 19 C -0.177 4.177 20 C -0.147 4.147 21 H 0.099 0.901 22 C -0.169 4.169 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.037 0.963 33 H 0.010 0.990 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.161 0.839 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.154 13.272 6.685 18.581 hybrid contribution 0.871 -1.390 -0.233 1.657 sum -10.283 11.882 6.452 16.987 Atomic orbital electron populations 1.21703 0.91901 1.02289 1.03236 1.21522 0.97842 0.96669 0.97407 1.21887 0.99349 0.95412 1.03131 1.21848 0.78400 1.01455 0.99347 1.48083 1.07580 1.26492 1.50343 1.18659 0.92154 0.83863 0.91121 1.21709 1.41525 0.98400 0.96737 0.92848 1.25909 0.94566 1.01940 0.96826 1.70065 1.42408 1.28940 1.15428 0.85377 0.78352 0.78377 0.78484 1.18559 1.20510 1.19715 1.20445 0.86081 0.82012 0.79887 1.90600 1.17470 1.75455 1.65488 1.22562 1.03803 1.00710 0.94631 0.82775 1.23187 1.03464 1.00384 0.90625 1.22416 0.96887 0.94050 1.01392 0.90091 1.21374 1.02427 0.90604 1.02468 0.90438 0.91464 0.92795 0.93842 0.91147 0.90241 0.95894 0.91459 0.87861 0.96314 0.98950 0.92346 0.90919 0.83910 0.90050 0.91770 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.19 71.98 0.66 -1.98 16 2 C -0.11 -3.20 3.11 -10.79 -0.03 -3.23 16 3 C -0.14 -3.49 7.83 71.98 0.56 -2.92 16 4 C 0.11 3.69 4.86 86.38 0.42 4.11 16 5 N -0.60 -26.88 2.26 -826.15 -1.87 -28.75 16 6 C 0.26 15.02 5.22 85.64 0.45 15.47 16 7 C -0.55 -32.66 9.39 25.60 0.24 -32.42 16 8 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 9 C 0.01 0.39 5.46 84.66 0.46 0.85 16 10 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 11 Si 0.97 45.93 29.54 68.60 2.03 47.95 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 15 C 0.53 23.58 6.23 87.66 0.55 24.13 16 16 O -0.61 -34.02 15.82 -3.04 -0.05 -34.06 16 17 C -0.20 -5.99 4.11 -11.54 -0.05 -6.04 16 18 H 0.15 3.62 4.39 -2.39 -0.01 3.61 16 19 C -0.14 -3.60 9.88 30.59 0.30 -3.30 16 20 C -0.13 -3.51 5.92 -10.79 -0.06 -3.57 16 21 H 0.08 2.76 7.68 -2.39 -0.02 2.75 16 22 C -0.11 -1.97 10.19 71.98 0.73 -1.24 16 23 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.04 1.49 8.02 -2.38 -0.02 1.47 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.52 6.26 -2.39 -0.01 1.51 16 29 H 0.02 0.71 6.96 -2.39 -0.02 0.70 16 30 H 0.07 2.35 8.12 -2.39 -0.02 2.33 16 31 H 0.10 2.68 6.14 -2.39 -0.01 2.66 16 32 H 0.02 1.09 7.95 -2.38 -0.02 1.07 16 33 H -0.01 -0.51 7.35 -2.39 -0.02 -0.52 16 34 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.14 2.44 8.05 -2.39 -0.02 2.42 16 37 H 0.08 1.05 7.90 -2.39 -0.02 1.03 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -77.00 315.53 5.63 -71.37 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.00 Total: 11.21 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.23 Total: -10.15 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -1.58 Total: -86.32 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.05 Total: -34.06 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -77.00 5.63 -71.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.742 kcal (2) G-P(sol) polarization free energy of solvation -77.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds