Wall clock time and date at job start Mon Mar 30 2020 17:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47158 * 2 1 4 4 C 1.50709 * 109.46938 * 240.00575 * 2 1 3 5 5 H 1.08000 * 120.00068 * 240.00129 * 4 2 1 6 6 C 1.37880 * 119.99974 * 59.99749 * 4 2 1 7 7 N 1.31519 * 120.00089 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99973 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46893 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47098 * 120.00235 * 8 6 4 11 11 H 1.48505 * 109.47091 * 240.00539 * 8 6 4 12 12 N 1.46497 * 109.47063 * 120.00823 * 2 1 3 13 13 C 1.46496 * 120.00129 * 59.99902 * 12 2 1 14 14 C 1.34777 * 119.99525 * 239.99409 * 12 2 1 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 12 2 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 12 18 18 C 1.54260 * 110.02999 * 292.90964 * 17 16 14 19 19 C 1.54967 * 104.15845 * 217.13538 * 18 17 16 20 20 C 1.54889 * 102.77906 * 37.88720 * 19 18 17 21 21 C 1.53869 * 110.03198 * 175.68768 * 17 16 14 22 22 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46803 * 299.99447 * 1 2 3 24 24 H 1.09003 * 109.47210 * 59.99293 * 1 2 3 25 25 H 0.96993 * 120.00372 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47115 * 269.99822 * 13 12 2 27 27 H 1.08995 * 109.47364 * 30.00213 * 13 12 2 28 28 H 1.09002 * 109.47090 * 149.99764 * 13 12 2 29 29 H 1.09009 * 109.47352 * 300.27556 * 16 14 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 16 14 12 31 31 H 1.09002 * 110.01441 * 54.29713 * 17 16 14 32 32 H 1.09004 * 110.49005 * 335.77861 * 18 17 16 33 33 H 1.08997 * 110.49319 * 98.42834 * 18 17 16 34 34 H 1.09001 * 110.71942 * 279.57488 * 19 18 17 35 35 H 1.09001 * 110.92443 * 156.29683 * 19 18 17 36 36 H 1.08998 * 110.48811 * 203.40581 * 20 19 18 37 37 H 1.08999 * 110.59723 * 80.81604 * 20 19 18 38 38 H 1.08997 * 110.03661 * 238.56560 * 21 17 16 39 39 H 1.08993 * 110.03756 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1453 -2.2874 -3.6040 10 1 1.1658 -1.5862 -4.8162 11 1 3.1465 -0.1870 -4.8166 12 7 2.0183 -0.6908 1.1960 13 6 1.6644 -2.0933 1.4277 14 6 2.7933 -0.0358 2.0832 15 8 3.0860 1.1254 1.8916 16 6 3.2905 -0.7446 3.3167 17 6 4.1360 0.2186 4.1524 18 6 5.4341 0.5730 3.3981 19 6 6.5085 0.6577 4.5116 20 6 6.1034 -0.4924 5.4667 21 6 4.5611 -0.4581 5.4673 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 0.7093 1.1621 -3.4843 26 1 0.7376 -2.1446 1.9990 27 1 1.5295 -2.5969 0.4705 28 1 2.4629 -2.5821 1.9860 29 1 2.4402 -1.0871 3.9066 30 1 3.8980 -1.6008 3.0238 31 1 3.5686 1.1247 4.3652 32 1 5.6863 -0.2108 2.6837 33 1 5.3315 1.5329 2.8921 34 1 6.4595 1.6193 5.0224 35 1 7.5053 0.4886 4.1044 36 1 6.4895 -0.3094 6.4695 37 1 6.4636 -1.4494 5.0890 38 1 4.2009 0.1199 6.3183 39 1 4.1655 -1.4729 5.5099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:06 Heat of formation + Delta-G solvation = -60.442451 kcal Electronic energy + Delta-G solvation = -17756.266172 eV Core-core repulsion = 15083.849843 eV Total energy + Delta-G solvation = -2672.416328 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.39410 -37.59328 -35.19439 -32.86840 -31.28269 -29.23560 -28.51044 -26.11502 -25.43887 -25.12746 -21.15674 -20.56312 -19.38076 -18.16793 -16.60343 -16.15694 -15.70191 -14.98824 -14.88293 -14.60701 -14.03902 -13.24887 -13.20015 -12.82439 -12.39726 -12.25668 -11.82854 -11.54231 -11.44522 -11.12093 -11.06272 -10.93650 -10.84505 -10.76550 -10.61804 -10.56442 -10.42322 -10.21806 -10.18662 -10.14358 -9.13754 -8.77987 -8.39787 -7.51204 -6.05220 -4.12990 3.26647 3.34447 3.37251 3.51269 4.04798 4.41635 4.72883 4.76055 4.87120 5.25514 5.33700 5.37011 5.50394 5.57359 5.68704 5.74637 5.78657 5.90133 5.92863 5.98456 6.01101 6.07690 6.22256 6.24680 6.39606 6.41324 6.58861 6.70785 6.78926 6.87364 7.10942 7.49008 7.58608 7.75444 8.05680 8.23940 8.61312 8.87218 9.16081 9.53749 11.00098 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034350 B = 0.005735 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.931049 B = 4881.490618 C = 5124.370711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.597 5.597 13 C 0.085 3.915 14 C 0.501 3.499 15 O -0.552 6.552 16 C -0.133 4.133 17 C -0.075 4.075 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.121 4.121 22 H 0.028 0.972 23 H 0.010 0.990 24 H 0.092 0.908 25 H 0.262 0.738 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 -5.297 13.302 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.328 5.328 13 C -0.059 4.059 14 C 0.288 3.712 15 O -0.431 6.431 16 C -0.173 4.173 17 C -0.094 4.094 18 C -0.149 4.149 19 C -0.165 4.165 20 C -0.161 4.161 21 C -0.159 4.159 22 H 0.047 0.953 23 H 0.029 0.971 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.335 -4.577 13.032 14.807 hybrid contribution 0.153 -0.669 -0.940 1.164 sum 5.488 -5.246 12.092 14.278 Atomic orbital electron populations 1.22073 0.98338 0.99293 1.00683 1.18911 0.90786 0.94559 0.80134 0.91960 1.21370 1.31602 1.12912 0.90364 0.92279 1.24901 0.94985 0.94997 0.98964 1.69893 1.36503 1.22643 1.23589 0.86451 0.78582 0.79586 0.82828 1.19849 1.20956 1.20919 1.48249 1.49241 1.11567 1.23743 1.21570 0.98663 0.83508 1.02195 1.20475 0.79016 0.87240 0.84430 1.90623 1.58241 1.17182 1.77032 1.21867 1.00456 0.99401 0.95581 1.21506 0.96390 0.98007 0.93518 1.22376 0.93122 1.02630 0.96797 1.22547 0.98695 0.98293 0.96968 1.22347 0.95738 0.98893 0.99160 1.22242 0.95715 1.00532 0.97423 0.95254 0.97112 0.88941 0.92782 0.94075 0.90273 0.92873 0.89916 0.89654 0.90470 0.92067 0.90640 0.91825 0.92016 0.92229 0.91888 0.92029 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.97 37.16 0.33 -3.22 16 2 C 0.26 6.67 2.64 -69.08 -0.18 6.49 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.32 7.99 -34.43 -0.28 -14.59 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.21 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.60 -12.93 2.75 -175.27 -0.48 -13.41 16 13 C 0.08 1.44 9.23 59.84 0.55 2.00 16 14 C 0.50 10.42 7.45 -10.98 -0.08 10.33 16 15 O -0.55 -13.53 14.11 5.55 0.08 -13.46 16 16 C -0.13 -1.99 3.38 -27.88 -0.09 -2.09 16 17 C -0.08 -1.07 2.55 -89.51 -0.23 -1.29 16 18 C -0.11 -1.65 5.40 -25.03 -0.14 -1.79 16 19 C -0.13 -1.49 6.91 -24.70 -0.17 -1.66 16 20 C -0.12 -1.28 6.83 -25.07 -0.17 -1.45 16 21 C -0.12 -1.33 6.46 -25.61 -0.17 -1.50 16 22 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 28 H 0.05 0.74 6.45 -51.93 -0.33 0.40 16 29 H 0.08 1.08 8.11 -51.92 -0.42 0.65 16 30 H 0.09 1.16 7.29 -51.93 -0.38 0.78 16 31 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 32 H 0.06 0.94 7.77 -51.93 -0.40 0.54 16 33 H 0.07 1.29 7.63 -51.93 -0.40 0.90 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -30.52 305.30 -7.57 -38.09 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.66 Total: -0.10 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.71 Total: -7.11 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.15 Total: -38.20 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.52 -7.57 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.349 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds