Wall clock time and date at job start Mon Mar 30 2020 17:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47022 * 2 1 4 4 C 1.37096 * 120.00543 * 264.50833 * 3 2 1 5 5 H 1.07997 * 119.99998 * 141.46834 * 4 3 2 6 6 C 1.38943 * 119.99996 * 321.47912 * 4 3 2 7 7 N 1.31414 * 120.00160 * 340.16251 * 6 4 3 8 8 Si 1.86800 * 120.00321 * 160.16557 * 6 4 3 9 9 H 1.48499 * 109.46857 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47433 * 119.99880 * 8 6 4 11 11 H 1.48498 * 109.47206 * 239.99843 * 8 6 4 12 12 C 1.34777 * 119.99728 * 84.51168 * 3 2 1 13 13 O 1.21299 * 120.00181 * 180.27021 * 12 3 2 14 14 C 1.50703 * 120.00170 * 359.97438 * 12 3 2 15 15 C 1.52997 * 117.50038 * 243.66630 * 14 12 3 16 16 C 1.53002 * 117.49628 * 0.02562 * 15 14 12 17 17 C 1.53004 * 117.49892 * 145.01613 * 15 14 12 18 18 C 1.52997 * 117.50142 * 175.00470 * 14 12 3 19 19 C 1.52997 * 117.50287 * 214.97773 * 18 14 12 20 20 C 1.53006 * 117.49820 * 359.97438 * 18 14 12 21 21 H 1.08992 * 109.46952 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46967 * 300.00061 * 1 2 3 23 23 H 1.09006 * 109.46818 * 59.99823 * 1 2 3 24 24 H 1.09000 * 109.46832 * 240.00339 * 2 1 3 25 25 H 1.08997 * 109.46974 * 120.00313 * 2 1 3 26 26 H 0.96998 * 120.00307 * 180.02562 * 7 6 4 27 27 H 1.09008 * 115.54967 * 29.33660 * 14 12 3 28 28 H 1.09004 * 109.47219 * 111.39124 * 16 15 14 29 29 H 1.08996 * 109.46978 * 231.38645 * 16 15 14 30 30 H 1.08996 * 109.46991 * 351.39068 * 16 15 14 31 31 H 1.09000 * 109.46679 * 8.61337 * 17 15 14 32 32 H 1.09001 * 109.46774 * 128.61148 * 17 15 14 33 33 H 1.09000 * 109.47497 * 248.61032 * 17 15 14 34 34 H 1.09002 * 109.47298 * 111.38871 * 19 18 14 35 35 H 1.08996 * 109.47886 * 231.39488 * 19 18 14 36 36 H 1.09007 * 109.47160 * 351.39645 * 19 18 14 37 37 H 1.09003 * 109.47021 * 60.37008 * 20 18 14 38 38 H 1.09001 * 109.46628 * 180.36798 * 20 18 14 39 39 H 1.08997 * 109.47161 * 300.36948 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3540 1.9897 -1.1818 5 1 2.1176 3.0318 -1.3388 6 6 2.9981 1.2658 -2.1775 7 7 3.6288 0.1527 -1.8772 8 14 2.9678 1.8747 -3.9432 9 1 2.1966 3.1416 -4.0167 10 1 4.3576 2.1130 -4.4087 11 1 2.3245 0.8533 -4.8081 12 6 2.1377 2.0537 1.1619 13 8 2.5373 3.1990 1.1615 14 6 1.7683 1.3851 2.4610 15 6 0.6006 1.9767 3.2530 16 6 -0.1031 3.2016 2.6652 17 6 -0.2980 1.0040 4.0195 18 6 2.0356 2.1577 3.7542 19 6 2.4613 1.3521 4.9833 20 6 2.6580 3.5498 3.6297 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 4.0788 -0.3525 -2.5723 27 1 1.8962 0.3028 2.4857 28 1 -1.1103 2.9265 2.3520 29 1 -0.1588 3.9857 3.4202 30 1 0.4585 3.5650 1.8046 31 1 0.1431 0.0075 3.9970 32 1 -0.3938 1.3358 5.0533 33 1 -1.2833 0.9760 3.5541 34 1 3.4997 1.5792 5.2248 35 1 1.8257 1.6157 5.8286 36 1 2.3620 0.2873 4.7721 37 1 1.9974 4.1924 3.0476 38 1 2.7966 3.9760 4.6233 39 1 3.6234 3.4728 3.1294 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074233654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:23 Heat of formation + Delta-G solvation = -18.352980 kcal Electronic energy + Delta-G solvation = -18563.565564 eV Core-core repulsion = 15892.974372 eV Total energy + Delta-G solvation = -2670.591192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -39.83823 -37.11205 -34.76218 -31.96167 -30.74713 -29.36143 -28.22018 -27.70024 -25.82202 -24.88338 -22.33025 -21.24501 -17.95058 -17.36553 -16.66208 -15.99500 -14.99489 -14.57220 -14.16083 -13.93799 -13.51485 -13.15926 -12.83061 -12.60248 -12.33722 -12.11531 -12.03174 -11.93558 -11.74455 -11.47013 -11.39863 -11.29216 -11.12699 -10.98897 -10.80688 -10.39070 -10.30133 -10.24194 -9.98444 -9.13704 -9.03300 -8.78831 -8.06121 -7.35426 -6.27029 -3.91944 3.17624 3.28487 3.34806 3.65915 4.18529 4.39541 4.78039 5.04340 5.13563 5.27955 5.36863 5.45654 5.56751 5.84103 5.86886 5.94103 5.98469 6.04125 6.10809 6.15955 6.23137 6.27760 6.30769 6.36001 6.42730 6.45499 6.55719 6.56116 6.63809 6.75437 6.85631 6.95054 7.17159 7.31573 7.63581 8.35548 8.60470 9.27648 9.49798 10.14097 10.77538 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.032035 B = 0.007885 C = 0.007410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.826805 B = 3549.974486 C = 3777.578784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.439 5.439 4 C -0.304 4.304 5 H 0.089 0.911 6 C 0.036 3.964 7 N -0.871 5.871 8 Si 0.915 3.085 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.493 3.507 13 O -0.575 6.575 14 C -0.161 4.161 15 C -0.105 4.105 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.098 4.098 19 C -0.110 4.110 20 C -0.099 4.099 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.046 0.954 26 H 0.266 0.734 27 H 0.107 0.893 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 -1.444 9.029 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.020 4.020 3 N -0.158 5.158 4 C -0.432 4.432 5 H 0.106 0.894 6 C -0.168 4.168 7 N -0.510 5.510 8 Si 0.742 3.258 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.282 3.718 13 O -0.459 6.459 14 C -0.182 4.182 15 C -0.106 4.106 16 C -0.179 4.179 17 C -0.167 4.167 18 C -0.099 4.099 19 C -0.168 4.168 20 C -0.156 4.156 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.986 -1.030 8.887 10.764 hybrid contribution 0.075 -0.186 -0.961 0.982 sum -5.911 -1.217 7.926 9.962 Atomic orbital electron populations 1.22200 0.98262 1.00095 1.01614 1.21447 0.91633 0.85713 1.03218 1.43426 1.55821 1.11756 1.04779 1.19419 1.36223 0.97238 0.90359 0.89376 1.25377 0.94333 0.96615 1.00482 1.69950 1.30719 1.16861 1.33428 0.86049 0.78058 0.78992 0.82692 1.19244 1.20832 1.20694 1.19385 0.81423 0.87324 0.83696 1.90493 1.50443 1.18450 1.86486 1.22821 1.03855 0.98974 0.92530 1.21578 0.89227 0.98476 1.01335 1.21444 0.99479 0.95535 1.01442 1.21324 0.98566 0.97701 0.99119 1.21589 0.97119 0.97613 0.93555 1.21306 1.00840 0.98815 0.95793 1.21299 1.02042 0.93322 0.98926 0.93438 0.93482 0.92700 0.87892 0.93592 0.92430 0.87495 0.93079 0.92780 0.90217 0.92614 0.92525 0.92477 0.92378 0.92531 0.92756 0.90898 0.94757 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.16 37.16 0.38 -2.67 16 2 C 0.10 2.32 5.42 -4.04 -0.02 2.30 16 3 N -0.44 -11.26 2.53 -114.81 -0.29 -11.55 16 4 C -0.30 -8.52 8.89 -14.94 -0.13 -8.65 16 5 H 0.09 2.58 7.78 -52.49 -0.41 2.17 16 6 C 0.04 0.96 4.93 -17.47 -0.09 0.87 16 7 N -0.87 -23.91 11.52 55.50 0.64 -23.27 16 8 Si 0.92 20.89 29.60 -169.99 -5.03 15.86 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.49 12.09 6.16 -10.98 -0.07 12.02 16 13 O -0.57 -15.51 11.80 5.54 0.07 -15.44 16 14 C -0.16 -3.13 4.19 -91.77 -0.38 -3.52 16 15 C -0.11 -1.73 2.70 -154.47 -0.42 -2.15 16 16 C -0.12 -2.07 8.18 37.16 0.30 -1.76 16 17 C -0.11 -1.44 8.88 37.16 0.33 -1.11 16 18 C -0.10 -1.68 2.70 -154.47 -0.42 -2.10 16 19 C -0.11 -1.52 8.84 37.16 0.33 -1.19 16 20 C -0.10 -1.81 7.91 37.16 0.29 -1.52 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.10 2.53 5.62 -51.93 -0.29 2.24 16 25 H 0.05 0.96 6.18 -51.93 -0.32 0.64 16 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.11 2.01 6.18 -51.92 -0.32 1.69 16 28 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 29 H 0.05 0.82 7.99 -51.93 -0.41 0.41 16 30 H 0.08 1.64 5.11 -51.93 -0.27 1.38 16 31 H 0.05 0.70 7.77 -51.93 -0.40 0.29 16 32 H 0.06 0.65 8.02 -51.93 -0.42 0.24 16 33 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 34 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.06 0.67 8.02 -51.93 -0.42 0.26 16 36 H 0.05 0.71 7.78 -51.93 -0.40 0.30 16 37 H 0.07 1.43 5.07 -51.93 -0.26 1.17 16 38 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 39 H 0.06 1.33 7.38 -51.93 -0.38 0.95 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -29.82 302.91 -6.29 -36.12 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.35 Total: 3.18 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 0.11 Total: -9.46 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.35 Total: -34.82 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.07 Total: -15.44 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.82 -6.29 -36.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074233654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.764 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds