Wall clock time and date at job start Mon Mar 30 2020 17:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47022 * 2 1 4 4 C 1.37096 * 120.00543 * 264.50833 * 3 2 1 5 5 H 1.07997 * 119.99998 * 141.46834 * 4 3 2 6 6 C 1.38943 * 119.99996 * 321.47912 * 4 3 2 7 7 N 1.31414 * 120.00160 * 340.16251 * 6 4 3 8 8 Si 1.86800 * 120.00321 * 160.16557 * 6 4 3 9 9 H 1.48499 * 109.46857 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47433 * 119.99880 * 8 6 4 11 11 H 1.48498 * 109.47206 * 239.99843 * 8 6 4 12 12 C 1.34777 * 119.99728 * 84.51168 * 3 2 1 13 13 O 1.21299 * 120.00181 * 180.27021 * 12 3 2 14 14 C 1.50703 * 120.00170 * 359.97438 * 12 3 2 15 15 C 1.52997 * 117.50038 * 243.66630 * 14 12 3 16 16 C 1.53002 * 117.49628 * 0.02562 * 15 14 12 17 17 C 1.53004 * 117.49892 * 145.01613 * 15 14 12 18 18 C 1.52997 * 117.50142 * 175.00470 * 14 12 3 19 19 C 1.52997 * 117.50287 * 214.97773 * 18 14 12 20 20 C 1.53006 * 117.49820 * 359.97438 * 18 14 12 21 21 H 1.08992 * 109.46952 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46967 * 300.00061 * 1 2 3 23 23 H 1.09006 * 109.46818 * 59.99823 * 1 2 3 24 24 H 1.09000 * 109.46832 * 240.00339 * 2 1 3 25 25 H 1.08997 * 109.46974 * 120.00313 * 2 1 3 26 26 H 0.96998 * 120.00307 * 180.02562 * 7 6 4 27 27 H 1.09008 * 115.54967 * 29.33660 * 14 12 3 28 28 H 1.09004 * 109.47219 * 111.39124 * 16 15 14 29 29 H 1.08996 * 109.46978 * 231.38645 * 16 15 14 30 30 H 1.08996 * 109.46991 * 351.39068 * 16 15 14 31 31 H 1.09000 * 109.46679 * 8.61337 * 17 15 14 32 32 H 1.09001 * 109.46774 * 128.61148 * 17 15 14 33 33 H 1.09000 * 109.47497 * 248.61032 * 17 15 14 34 34 H 1.09002 * 109.47298 * 111.38871 * 19 18 14 35 35 H 1.08996 * 109.47886 * 231.39488 * 19 18 14 36 36 H 1.09007 * 109.47160 * 351.39645 * 19 18 14 37 37 H 1.09003 * 109.47021 * 60.37008 * 20 18 14 38 38 H 1.09001 * 109.46628 * 180.36798 * 20 18 14 39 39 H 1.08997 * 109.47161 * 300.36948 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3540 1.9897 -1.1818 5 1 2.1176 3.0318 -1.3388 6 6 2.9981 1.2658 -2.1775 7 7 3.6288 0.1527 -1.8772 8 14 2.9678 1.8747 -3.9432 9 1 2.1966 3.1416 -4.0167 10 1 4.3576 2.1130 -4.4087 11 1 2.3245 0.8533 -4.8081 12 6 2.1377 2.0537 1.1619 13 8 2.5373 3.1990 1.1615 14 6 1.7683 1.3851 2.4610 15 6 0.6006 1.9767 3.2530 16 6 -0.1031 3.2016 2.6652 17 6 -0.2980 1.0040 4.0195 18 6 2.0356 2.1577 3.7542 19 6 2.4613 1.3521 4.9833 20 6 2.6580 3.5498 3.6297 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 4.0788 -0.3525 -2.5723 27 1 1.8962 0.3028 2.4857 28 1 -1.1103 2.9265 2.3520 29 1 -0.1588 3.9857 3.4202 30 1 0.4585 3.5650 1.8046 31 1 0.1431 0.0075 3.9970 32 1 -0.3938 1.3358 5.0533 33 1 -1.2833 0.9760 3.5541 34 1 3.4997 1.5792 5.2248 35 1 1.8257 1.6157 5.8286 36 1 2.3620 0.2873 4.7721 37 1 1.9974 4.1924 3.0476 38 1 2.7966 3.9760 4.6233 39 1 3.6234 3.4728 3.1294 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074233654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:22 Heat of formation + Delta-G solvation = -35.109815 kcal Electronic energy + Delta-G solvation = -18564.292195 eV Core-core repulsion = 15892.974372 eV Total energy + Delta-G solvation = -2671.317823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41529 -38.81016 -36.68336 -33.97110 -31.99293 -31.12336 -29.44010 -29.24507 -27.05260 -26.77534 -24.03939 -22.90540 -19.70072 -18.76566 -18.49882 -17.78516 -16.92451 -16.06056 -15.87938 -15.48416 -14.99497 -14.66210 -14.47936 -14.14686 -13.74941 -13.57455 -13.41585 -13.23190 -13.14200 -12.92681 -12.88061 -12.78916 -12.60809 -12.57028 -12.49049 -12.31251 -12.06735 -11.76525 -11.56656 -10.90134 -10.52294 -10.34793 -9.89138 -9.35010 -8.31953 -6.05039 1.34394 1.38795 1.52649 1.98058 2.29426 2.81572 3.06130 3.15657 3.75777 3.86500 3.91406 4.19024 4.27597 4.34158 4.50515 4.64541 4.66747 4.74210 4.81294 4.84987 4.91315 5.01234 5.05039 5.06658 5.08607 5.13876 5.18195 5.23116 5.24518 5.30254 5.41786 5.47498 5.51829 5.60137 5.73624 6.25707 6.61435 7.24595 7.55466 8.19363 8.71295 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.032035 B = 0.007885 C = 0.007410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.826805 B = 3549.974486 C = 3777.578784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.105 3.895 3 N -0.457 5.457 4 C -0.336 4.336 5 H 0.059 0.941 6 C 0.000 4.000 7 N -0.893 5.893 8 Si 0.979 3.021 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.263 1.263 12 C 0.482 3.518 13 O -0.614 6.614 14 C -0.184 4.184 15 C -0.084 4.084 16 C -0.122 4.122 17 C -0.106 4.106 18 C -0.098 4.098 19 C -0.105 4.105 20 C -0.095 4.095 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.272 0.728 27 H 0.116 0.884 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 -2.774 10.677 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 N -0.176 5.176 4 C -0.464 4.464 5 H 0.077 0.923 6 C -0.201 4.201 7 N -0.531 5.531 8 Si 0.803 3.197 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.188 1.188 12 C 0.273 3.727 13 O -0.500 6.500 14 C -0.205 4.205 15 C -0.084 4.084 16 C -0.179 4.179 17 C -0.163 4.163 18 C -0.098 4.098 19 C -0.162 4.162 20 C -0.152 4.152 21 H 0.100 0.900 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.479 -2.390 10.544 13.146 hybrid contribution 0.577 0.295 -1.447 1.586 sum -6.902 -2.095 9.097 11.609 Atomic orbital electron populations 1.22063 0.95322 1.02186 1.01209 1.21499 0.94001 0.83835 1.02499 1.43701 1.56379 1.12928 1.04579 1.19338 1.37934 0.96644 0.92483 0.92314 1.26110 0.93428 0.96716 1.03888 1.70017 1.30796 1.17571 1.34738 0.85104 0.78023 0.78634 0.77935 1.19649 1.20519 1.18811 1.20246 0.80305 0.86965 0.85186 1.90458 1.51897 1.20273 1.87383 1.22694 1.07886 0.99094 0.90836 1.21765 0.89084 0.98192 0.99409 1.21421 0.99658 0.96503 1.00313 1.21368 0.98035 0.97017 0.99858 1.21817 0.97846 0.96687 0.93482 1.21326 1.01475 0.98746 0.94663 1.21193 0.99775 0.94480 0.99783 0.89973 0.92613 0.94309 0.90359 0.92364 0.91888 0.86609 0.91410 0.91097 0.94683 0.91613 0.90050 0.91394 0.92269 0.89735 0.91726 0.93087 0.91611 0.95242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 10.16 71.98 0.73 -4.67 16 2 C 0.11 4.72 5.42 86.38 0.47 5.18 16 3 N -0.46 -24.29 2.53 -635.53 -1.60 -25.89 16 4 C -0.34 -19.68 8.89 84.04 0.75 -18.94 16 5 H 0.06 3.69 7.78 -2.91 -0.02 3.67 16 6 C 0.00 0.03 4.93 84.92 0.42 0.45 16 7 N -0.89 -49.85 11.52 21.66 0.25 -49.60 16 8 Si 0.98 43.72 29.60 68.60 2.03 45.75 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 C 0.48 24.55 6.16 87.66 0.54 25.09 16 13 O -0.61 -35.17 11.80 -3.09 -0.04 -35.21 16 14 C -0.18 -7.07 4.19 -11.54 -0.05 -7.12 16 15 C -0.08 -2.56 2.70 -52.16 -0.14 -2.70 16 16 C -0.12 -4.02 8.18 71.98 0.59 -3.43 16 17 C -0.11 -2.28 8.88 71.98 0.64 -1.64 16 18 C -0.10 -3.18 2.70 -52.16 -0.14 -3.33 16 19 C -0.11 -2.51 8.84 71.98 0.64 -1.88 16 20 C -0.10 -3.50 7.91 71.98 0.57 -2.93 16 21 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.05 1.89 7.67 -2.39 -0.02 1.88 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.08 3.90 5.62 -2.39 -0.01 3.89 16 25 H 0.06 2.40 6.18 -2.39 -0.01 2.39 16 26 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.12 4.18 6.18 -2.38 -0.01 4.17 16 28 H 0.07 1.96 7.92 -2.39 -0.02 1.94 16 29 H 0.07 2.06 7.99 -2.39 -0.02 2.04 16 30 H 0.03 1.48 5.11 -2.39 -0.01 1.47 16 31 H 0.06 1.32 7.77 -2.39 -0.02 1.30 16 32 H 0.08 1.41 8.02 -2.39 -0.02 1.39 16 33 H 0.07 1.35 7.92 -2.39 -0.02 1.33 16 34 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 35 H 0.08 1.58 8.02 -2.39 -0.02 1.56 16 36 H 0.06 1.43 7.78 -2.38 -0.02 1.41 16 37 H 0.05 2.07 5.07 -2.39 -0.01 2.06 16 38 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 39 H 0.03 1.25 7.38 -2.39 -0.02 1.24 16 Total: -1.00 -68.66 302.91 6.66 -62.00 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.01 Total: 18.87 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.01 Total: -15.91 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.36 Total: -75.49 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.04 Total: -35.21 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.66 6.66 -62.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074233654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.887 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds