Wall clock time and date at job start Mon Mar 30 2020 17:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47019 * 2 1 4 4 H 1.09000 * 109.46998 * 54.99748 * 3 2 1 5 5 C 1.50699 * 109.47082 * 175.00166 * 3 2 1 6 6 H 1.07997 * 120.00250 * 119.99869 * 5 3 2 7 7 C 1.37879 * 119.99794 * 300.00088 * 5 3 2 8 8 N 1.31516 * 120.00171 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99758 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47145 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46964 * 119.99829 * 9 7 5 12 12 H 1.48504 * 109.46845 * 239.99525 * 9 7 5 13 13 N 1.46905 * 109.46941 * 294.99899 * 3 2 1 14 14 C 1.46837 * 110.99679 * 174.99805 * 13 3 2 15 15 C 1.53232 * 109.43130 * 187.88026 * 14 13 3 16 16 C 1.52660 * 109.01554 * 303.29748 * 15 14 13 17 17 C 1.53493 * 113.72688 * 281.99318 * 16 15 14 18 18 O 1.44279 * 85.34175 * 267.89264 * 17 16 15 19 19 C 1.44283 * 93.42910 * 336.20547 * 18 17 16 20 20 C 1.52653 * 112.95251 * 53.54944 * 16 15 14 21 21 C 1.46855 * 111.01381 * 299.55298 * 13 3 2 22 22 H 1.08995 * 109.46859 * 299.99586 * 1 2 3 23 23 H 1.08992 * 109.47137 * 59.99979 * 1 2 3 24 24 H 1.08998 * 109.46902 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47390 * 239.99901 * 2 1 3 26 26 H 1.08999 * 109.47544 * 119.99516 * 2 1 3 27 27 H 0.97001 * 119.99684 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47863 * 67.89008 * 14 13 3 29 29 H 1.08995 * 109.47939 * 307.87259 * 14 13 3 30 30 H 1.08997 * 109.54881 * 63.16160 * 15 14 13 31 31 H 1.09000 * 109.54837 * 183.43594 * 15 14 13 32 32 H 1.09000 * 113.89049 * 21.99357 * 17 16 15 33 33 H 1.08993 * 113.89182 * 153.79170 * 17 16 15 34 34 H 1.09008 * 113.88886 * 269.69980 * 19 18 17 35 35 H 1.09000 * 114.02220 * 137.92373 * 19 18 17 36 36 H 1.09001 * 109.54942 * 66.30524 * 20 16 15 37 37 H 1.08998 * 109.54814 * 186.49514 * 20 16 15 38 38 H 1.08999 * 109.47699 * 52.14171 * 21 13 3 39 39 H 1.09000 * 109.48307 * 292.12146 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8813 1.3817 10 1 6.5987 1.5464 0.1941 11 1 6.3990 1.6168 2.6102 12 1 6.4971 -0.5174 1.4629 13 7 1.6514 2.0993 -1.2553 14 6 2.0206 3.5204 -1.2418 15 6 1.4286 4.2126 -2.4741 16 6 1.9182 3.4962 -3.7302 17 6 3.3568 3.8567 -4.1257 18 8 2.7506 4.8774 -4.9456 19 6 1.4917 4.1783 -5.0370 20 6 1.6468 1.9943 -3.7028 21 6 2.2288 1.4052 -2.4135 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.8294 -0.0603 2.9502 28 1 3.1064 3.6141 -1.2589 29 1 1.6295 3.9890 -0.3388 30 1 0.3405 4.1684 -2.4297 31 1 1.7519 5.2533 -2.4984 32 1 3.9556 4.2488 -3.3036 33 1 3.8664 3.0788 -4.6941 34 1 1.4244 3.4998 -5.8875 35 1 0.6182 4.8221 -4.9345 36 1 0.5717 1.8173 -3.7318 37 1 2.1175 1.5229 -4.5656 38 1 1.9882 0.3435 -2.3580 39 1 3.3112 1.5332 -2.4115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:49 Heat of formation + Delta-G solvation = -18.175814 kcal Electronic energy + Delta-G solvation = -18491.591101 eV Core-core repulsion = 15821.007591 eV Total energy + Delta-G solvation = -2670.583510 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.79712 -37.59322 -34.10099 -31.81879 -30.85887 -30.08988 -27.06135 -26.41573 -25.15741 -23.05809 -22.57427 -21.08157 -19.12619 -18.13347 -16.42969 -15.90976 -15.74325 -15.26242 -15.00629 -14.28881 -14.02288 -13.58232 -13.07084 -12.76104 -12.60836 -12.32627 -12.02366 -11.75806 -11.53524 -11.24303 -11.10618 -10.88660 -10.68399 -10.59007 -10.33487 -10.06877 -10.00856 -9.78256 -9.65931 -9.45149 -9.13069 -9.05290 -8.37207 -7.10688 -5.99864 -4.13656 3.23806 3.32879 3.35579 3.87420 4.37472 4.41489 4.92390 5.07918 5.23974 5.27072 5.35881 5.42174 5.68213 5.79295 5.83848 6.01661 6.05997 6.11239 6.17927 6.29283 6.31471 6.39239 6.40922 6.46506 6.56646 6.62713 6.70106 6.76158 6.87273 7.10335 7.19519 7.34012 7.61239 7.75581 7.98550 8.15778 8.33721 8.47546 8.97120 9.54137 10.98798 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.008280 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.681505 B = 3380.995956 C = 4066.817979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.534 5.534 14 C 0.067 3.933 15 C -0.091 4.091 16 C -0.115 4.115 17 C 0.041 3.959 18 O -0.387 6.387 19 C 0.038 3.962 20 C -0.109 4.109 21 C 0.063 3.937 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.024 0.976 25 H 0.033 0.967 26 H 0.092 0.908 27 H 0.260 0.740 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 3.588 -9.808 11.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.258 5.258 14 C -0.062 4.062 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.035 4.035 18 O -0.306 6.306 19 C -0.039 4.039 20 C -0.147 4.147 21 C -0.066 4.066 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.256 3.718 -9.762 11.280 hybrid contribution 1.973 -0.211 0.329 2.012 sum -2.282 3.506 -9.433 10.319 Atomic orbital electron populations 1.21705 0.98840 0.98376 1.00599 1.21645 0.92277 0.99269 1.01957 1.19272 0.92997 0.91109 0.85830 0.94402 1.21775 0.92916 1.37920 1.05413 0.92641 1.24912 0.97735 0.95080 0.95727 1.69883 1.34655 1.38418 1.09410 0.86652 0.86328 0.77713 0.77976 1.19981 1.21028 1.21019 1.62280 1.58427 1.01010 1.04106 1.21816 0.98102 0.90249 0.96040 1.21375 1.00861 0.97822 0.92822 1.23229 0.95229 0.97197 0.95902 1.24015 0.95954 0.90014 0.93556 1.89632 1.26904 1.40257 1.73762 1.23994 0.88411 0.94599 0.96864 1.21649 1.01638 0.93188 0.98212 1.21895 0.96873 0.98449 0.89346 0.94222 0.93384 0.95658 0.94803 0.88987 0.92959 0.94697 0.91592 0.91215 0.91901 0.89247 0.90505 0.90649 0.89582 0.91369 0.92406 0.90928 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.80 37.16 0.36 -2.38 16 2 C -0.11 -2.61 5.06 -26.73 -0.14 -2.75 16 3 C 0.21 5.11 1.74 -68.86 -0.12 4.99 16 4 H 0.04 1.02 8.06 -51.93 -0.42 0.60 16 5 C -0.54 -14.08 7.23 -34.44 -0.25 -14.33 16 6 H 0.06 1.46 5.88 -52.49 -0.31 1.15 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.89 -24.53 11.29 55.43 0.63 -23.90 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.53 -10.75 4.05 -227.82 -0.92 -11.67 16 14 C 0.07 1.25 5.04 -3.74 -0.02 1.23 16 15 C -0.09 -1.39 5.24 -26.79 -0.14 -1.53 16 16 C -0.12 -1.65 0.80 -154.37 -0.12 -1.78 16 17 C 0.04 0.60 8.14 37.36 0.30 0.91 16 18 O -0.39 -5.95 12.38 -35.23 -0.44 -6.39 16 19 C 0.04 0.49 8.36 37.34 0.31 0.80 16 20 C -0.11 -1.61 5.29 -26.79 -0.14 -1.75 16 21 C 0.06 1.16 4.75 -3.73 -0.02 1.15 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.76 6.01 -51.93 -0.31 0.45 16 26 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.03 0.71 6.64 -51.93 -0.35 0.36 16 29 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.09 1.36 7.72 -51.93 -0.40 0.96 16 33 H 0.08 1.04 8.02 -51.93 -0.42 0.62 16 34 H 0.08 0.84 8.09 -51.92 -0.42 0.42 16 35 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 38 H 0.07 1.40 5.84 -51.93 -0.30 1.09 16 39 H 0.03 0.69 6.69 -51.93 -0.35 0.35 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -27.19 295.12 -7.85 -35.04 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.48 Total: 0.34 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -0.06 Total: -13.73 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.30 Total: -35.57 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.44 Total: -6.39 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.19 -7.85 -35.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.863 kcal (2) G-P(sol) polarization free energy of solvation -27.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds