Wall clock time and date at job start Mon Mar 30 2020 17:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47019 * 2 1 4 4 H 1.09000 * 109.46998 * 54.99748 * 3 2 1 5 5 C 1.50699 * 109.47082 * 175.00166 * 3 2 1 6 6 H 1.07997 * 120.00250 * 119.99869 * 5 3 2 7 7 C 1.37879 * 119.99794 * 300.00088 * 5 3 2 8 8 N 1.31516 * 120.00171 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99758 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47145 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46964 * 119.99829 * 9 7 5 12 12 H 1.48504 * 109.46845 * 239.99525 * 9 7 5 13 13 N 1.46905 * 109.46941 * 294.99899 * 3 2 1 14 14 C 1.46837 * 110.99679 * 174.99805 * 13 3 2 15 15 C 1.53232 * 109.43130 * 187.88026 * 14 13 3 16 16 C 1.52660 * 109.01554 * 303.29748 * 15 14 13 17 17 C 1.53493 * 113.72688 * 281.99318 * 16 15 14 18 18 O 1.44279 * 85.34175 * 267.89264 * 17 16 15 19 19 C 1.44283 * 93.42910 * 336.20547 * 18 17 16 20 20 C 1.52653 * 112.95251 * 53.54944 * 16 15 14 21 21 C 1.46855 * 111.01381 * 299.55298 * 13 3 2 22 22 H 1.08995 * 109.46859 * 299.99586 * 1 2 3 23 23 H 1.08992 * 109.47137 * 59.99979 * 1 2 3 24 24 H 1.08998 * 109.46902 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47390 * 239.99901 * 2 1 3 26 26 H 1.08999 * 109.47544 * 119.99516 * 2 1 3 27 27 H 0.97001 * 119.99684 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47863 * 67.89008 * 14 13 3 29 29 H 1.08995 * 109.47939 * 307.87259 * 14 13 3 30 30 H 1.08997 * 109.54881 * 63.16160 * 15 14 13 31 31 H 1.09000 * 109.54837 * 183.43594 * 15 14 13 32 32 H 1.09000 * 113.89049 * 21.99357 * 17 16 15 33 33 H 1.08993 * 113.89182 * 153.79170 * 17 16 15 34 34 H 1.09008 * 113.88886 * 269.69980 * 19 18 17 35 35 H 1.09000 * 114.02220 * 137.92373 * 19 18 17 36 36 H 1.09001 * 109.54942 * 66.30524 * 20 16 15 37 37 H 1.08998 * 109.54814 * 186.49514 * 20 16 15 38 38 H 1.08999 * 109.47699 * 52.14171 * 21 13 3 39 39 H 1.09000 * 109.48307 * 292.12146 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8813 1.3817 10 1 6.5987 1.5464 0.1941 11 1 6.3990 1.6168 2.6102 12 1 6.4971 -0.5174 1.4629 13 7 1.6514 2.0993 -1.2553 14 6 2.0206 3.5204 -1.2418 15 6 1.4286 4.2126 -2.4741 16 6 1.9182 3.4962 -3.7302 17 6 3.3568 3.8567 -4.1257 18 8 2.7506 4.8774 -4.9456 19 6 1.4917 4.1783 -5.0370 20 6 1.6468 1.9943 -3.7028 21 6 2.2288 1.4052 -2.4135 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.8294 -0.0603 2.9502 28 1 3.1064 3.6141 -1.2589 29 1 1.6295 3.9890 -0.3388 30 1 0.3405 4.1684 -2.4297 31 1 1.7519 5.2533 -2.4984 32 1 3.9556 4.2488 -3.3036 33 1 3.8664 3.0788 -4.6941 34 1 1.4244 3.4998 -5.8875 35 1 0.6182 4.8221 -4.9345 36 1 0.5717 1.8173 -3.7318 37 1 2.1175 1.5229 -4.5656 38 1 1.9882 0.3435 -2.3580 39 1 3.3112 1.5332 -2.4115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:49 Heat of formation + Delta-G solvation = -34.944409 kcal Electronic energy + Delta-G solvation = -18492.318242 eV Core-core repulsion = 15821.007591 eV Total energy + Delta-G solvation = -2671.310650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.96438 -39.17993 -35.75798 -33.70482 -32.33086 -31.53670 -28.74993 -27.51938 -26.72068 -24.74553 -24.03869 -22.56378 -20.89732 -19.46713 -18.20713 -17.31821 -16.91374 -16.75615 -16.37118 -15.99945 -15.59533 -15.08724 -14.74768 -14.18237 -14.06113 -13.83731 -13.32999 -13.30477 -13.13790 -12.92431 -12.77676 -12.62398 -12.41962 -12.03114 -11.97606 -11.63044 -11.51756 -11.36240 -11.29131 -10.92145 -10.77951 -10.44276 -10.37991 -8.87646 -8.02038 -6.25356 1.33814 1.37528 1.46202 2.38860 2.79823 3.14982 3.24135 3.54587 3.76085 4.03481 4.25842 4.40598 4.46048 4.49135 4.61647 4.65146 4.72727 4.76398 4.80491 4.87126 4.89920 4.93531 5.08245 5.14777 5.18465 5.23729 5.24543 5.29438 5.37015 5.44477 5.47434 5.54191 5.65440 5.82294 6.09560 6.23605 6.41891 6.74231 6.97626 7.45699 8.91724 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.008280 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.681505 B = 3380.995956 C = 4066.817979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.047 0.953 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.280 1.280 13 N -0.528 5.528 14 C 0.068 3.932 15 C -0.080 4.080 16 C -0.119 4.119 17 C 0.039 3.961 18 O -0.406 6.406 19 C 0.049 3.951 20 C -0.098 4.098 21 C 0.064 3.936 22 H 0.030 0.970 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.261 0.739 28 H 0.012 0.988 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 3.737 -11.885 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.206 1.206 13 N -0.252 5.252 14 C -0.061 4.061 15 C -0.118 4.118 16 C -0.120 4.120 17 C -0.038 4.038 18 O -0.325 6.325 19 C -0.027 4.027 20 C -0.135 4.135 21 C -0.064 4.064 22 H 0.049 0.951 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -4.871 3.874 -11.855 13.390 hybrid contribution 2.162 -0.238 0.985 2.388 sum -2.709 3.636 -10.870 11.778 Atomic orbital electron populations 1.21562 0.96214 0.99770 1.00713 1.21483 0.94578 0.98152 1.00420 1.19039 0.91607 0.91548 0.86574 0.98104 1.22001 0.94225 1.37294 1.05068 0.93447 1.25587 1.01513 0.95091 0.95669 1.70006 1.36057 1.39156 1.09806 0.85751 0.81848 0.77708 0.77778 1.19775 1.20879 1.20575 1.62251 1.58172 1.01575 1.03187 1.21821 0.96905 0.89741 0.97633 1.21266 1.01243 0.97795 0.91490 1.23229 0.95315 0.96923 0.96493 1.24042 0.96135 0.90195 0.93429 1.89623 1.28180 1.40939 1.73800 1.24151 0.87945 0.94558 0.96067 1.21583 1.02200 0.93253 0.96494 1.21921 0.95738 0.98209 0.90531 0.95058 0.92196 0.93611 0.94588 0.92155 0.92990 0.96958 0.92928 0.90055 0.91191 0.90767 0.89254 0.88294 0.87906 0.90244 0.90044 0.91729 0.97003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.80 71.98 0.71 -4.17 16 2 C -0.11 -5.03 5.06 30.60 0.15 -4.88 16 3 C 0.22 10.76 1.74 44.17 0.08 10.83 16 4 H 0.00 0.06 8.06 -2.39 -0.02 0.04 16 5 C -0.55 -29.21 7.23 25.60 0.19 -29.02 16 6 H 0.05 2.56 5.88 -2.91 -0.02 2.55 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -51.76 11.29 21.45 0.24 -51.52 16 9 Si 0.94 43.52 29.54 68.60 2.03 45.54 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.53 -21.24 4.05 -874.70 -3.54 -24.79 16 14 C 0.07 2.55 5.04 86.39 0.44 2.99 16 15 C -0.08 -2.32 5.24 30.56 0.16 -2.16 16 16 C -0.12 -3.11 0.80 -52.09 -0.04 -3.15 16 17 C 0.04 1.06 8.14 72.11 0.59 1.65 16 18 O -0.41 -11.42 12.38 -148.98 -1.84 -13.26 16 19 C 0.05 1.05 8.36 72.10 0.60 1.65 16 20 C -0.10 -2.59 5.29 30.56 0.16 -2.43 16 21 C 0.06 2.32 4.75 86.39 0.41 2.73 16 22 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.06 2.17 7.75 -2.39 -0.02 2.16 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.04 1.63 6.01 -2.39 -0.01 1.61 16 26 H 0.06 3.22 5.95 -2.39 -0.01 3.20 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.01 0.51 6.64 -2.39 -0.02 0.50 16 29 H 0.05 2.08 8.04 -2.39 -0.02 2.06 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 31 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 32 H 0.07 2.24 7.72 -2.39 -0.02 2.22 16 33 H 0.09 2.22 8.02 -2.39 -0.02 2.20 16 34 H 0.10 1.70 8.09 -2.38 -0.02 1.68 16 35 H 0.10 1.88 8.09 -2.39 -0.02 1.86 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 1.82 8.04 -2.39 -0.02 1.80 16 38 H 0.06 2.42 5.84 -2.39 -0.01 2.41 16 39 H 0.01 0.48 6.69 -2.39 -0.02 0.46 16 Total: -1.00 -59.10 295.12 1.78 -57.32 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.01 Total: 11.06 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 3.89 Total: -24.35 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -3.30 Total: -76.31 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -1.84 Total: -13.26 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -59.10 1.78 -57.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.373 kcal (2) G-P(sol) polarization free energy of solvation -59.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds