Wall clock time and date at job start Mon Mar 30 2020 17:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46793 * 2 1 4 4 H 1.08997 * 109.47408 * 305.00352 * 3 2 1 5 5 C 1.50700 * 109.46933 * 184.99642 * 3 2 1 6 6 H 1.07996 * 120.00131 * 239.99836 * 5 3 2 7 7 C 1.37880 * 119.99583 * 60.00625 * 5 3 2 8 8 N 1.31518 * 120.00017 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99922 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46752 * 60.00234 * 9 7 5 11 11 H 1.48502 * 109.47298 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47415 * 300.00544 * 9 7 5 13 13 N 1.46907 * 109.46859 * 65.00332 * 3 2 1 14 14 C 1.46900 * 110.99599 * 274.99812 * 13 3 2 15 15 H 1.09000 * 115.55829 * 350.70497 * 14 13 3 16 16 C 1.53056 * 117.50430 * 136.46733 * 14 13 3 17 17 C 1.52726 * 59.94498 * 107.46199 * 16 14 13 18 18 C 1.53269 * 117.81823 * 252.29069 * 17 16 14 19 19 C 1.53405 * 108.35690 * 163.56774 * 18 17 16 20 20 C 1.53054 * 109.08444 * 53.63439 * 19 18 17 21 21 O 1.42839 * 109.78250 * 299.28960 * 20 19 18 22 22 C 1.42998 * 114.17149 * 64.26727 * 21 20 19 23 23 H 1.09003 * 109.47347 * 299.99451 * 1 2 3 24 24 H 1.08995 * 109.47318 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.46630 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47243 * 240.00473 * 2 1 3 27 27 H 1.08995 * 109.47318 * 120.00206 * 2 1 3 28 28 H 0.97000 * 119.99649 * 179.97438 * 8 7 5 29 29 H 1.00896 * 110.99739 * 151.04602 * 13 3 2 30 30 H 1.08999 * 117.50006 * 359.97438 * 16 14 13 31 31 H 1.09003 * 117.50123 * 214.94043 * 16 14 13 32 32 H 1.08990 * 109.68889 * 43.84956 * 18 17 16 33 33 H 1.09000 * 109.71410 * 283.29660 * 18 17 16 34 34 H 1.09001 * 109.53324 * 293.75714 * 19 18 17 35 35 H 1.09002 * 109.53777 * 173.51734 * 19 18 17 36 36 H 1.09002 * 109.40915 * 59.36636 * 20 19 18 37 37 H 1.09001 * 109.41005 * 179.21554 * 20 19 18 38 38 H 1.08996 * 109.61625 * 182.75519 * 22 21 20 39 39 H 1.09005 * 109.74091 * 62.35055 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3368 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5974 0.1473 -0.2349 11 1 6.3978 0.2170 -2.6504 12 1 6.4995 2.2816 -1.3819 13 7 1.6513 2.0993 1.2553 14 6 0.2912 2.6466 1.1639 15 1 -0.1552 2.6334 0.1695 16 6 -0.6392 2.4316 2.3600 17 6 -0.0612 3.8173 2.0799 18 6 1.0296 4.3408 3.0208 19 6 1.7351 5.5177 2.3350 20 6 0.6877 6.5483 1.9066 21 8 -0.2259 5.9539 0.9833 22 6 -1.0077 4.8913 1.5350 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8292 -0.0609 -2.9499 29 1 2.3138 2.8171 1.5080 30 1 -0.2420 1.8836 3.2144 31 1 -1.6980 2.2765 2.1526 32 1 1.7501 3.5488 3.2243 33 1 0.5793 4.6765 3.9550 34 1 2.2734 5.1589 1.4577 35 1 2.4361 5.9783 3.0311 36 1 0.1416 6.8958 2.7836 37 1 1.1847 7.3937 1.4309 38 1 -1.6404 4.4613 0.7587 39 1 -1.6305 5.2740 2.3437 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:52 Heat of formation + Delta-G solvation = -33.079635 kcal Electronic energy + Delta-G solvation = -18121.489345 eV Core-core repulsion = 15450.259557 eV Total energy + Delta-G solvation = -2671.229788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.66933 -36.97143 -34.78069 -32.51417 -31.80284 -30.04276 -27.81729 -26.08793 -24.98225 -22.78770 -21.97479 -20.90541 -19.37843 -18.64890 -16.64151 -15.99426 -15.71080 -15.16196 -14.63211 -14.51729 -14.13905 -13.60549 -13.13235 -12.69268 -12.59539 -12.31917 -12.22581 -11.77475 -11.64360 -11.22092 -11.09469 -10.96267 -10.81219 -10.68747 -10.49535 -10.10221 -9.99809 -9.81341 -9.52358 -9.26733 -9.10982 -8.77634 -8.38748 -7.18092 -6.01647 -4.08569 3.31164 3.35764 3.38190 3.86517 4.34974 4.39565 4.78972 4.97774 5.01327 5.16650 5.19946 5.28643 5.35695 5.51151 5.64049 5.66483 5.76310 5.97030 5.99044 6.11124 6.12736 6.26159 6.37418 6.42095 6.47042 6.54217 6.56400 6.68342 7.11000 7.18060 7.32381 7.41470 7.61598 7.78356 7.91633 8.30877 8.41469 8.66244 9.01504 9.56937 11.03887 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.024678 B = 0.007412 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.344896 B = 3776.791504 C = 4448.100563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.656 5.656 14 C 0.064 3.936 15 H 0.093 0.907 16 C -0.166 4.166 17 C -0.191 4.191 18 C -0.081 4.081 19 C -0.155 4.155 20 C 0.064 3.936 21 O -0.381 6.381 22 C 0.103 3.897 23 H 0.054 0.946 24 H 0.034 0.966 25 H 0.026 0.974 26 H 0.089 0.911 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.334 0.666 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 8.037 8.264 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.287 5.287 14 C -0.048 4.048 15 H 0.110 0.890 16 C -0.205 4.205 17 C -0.193 4.193 18 C -0.119 4.119 19 C -0.193 4.193 20 C -0.013 4.013 21 O -0.299 6.299 22 C 0.026 3.974 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.070 7.406 8.167 13.097 hybrid contribution 1.125 0.522 -0.385 1.298 sum -5.946 7.927 7.782 12.600 Atomic orbital electron populations 1.21992 0.99673 0.98914 1.00330 1.21517 0.91531 0.99480 1.01912 1.19164 0.94403 0.91085 0.84049 0.97858 1.21223 0.91268 1.38228 1.05204 0.92419 1.24903 0.98216 0.95133 0.95615 1.69883 1.34943 1.38331 1.09441 0.86605 0.85555 0.78188 0.77303 1.20241 1.21283 1.20342 1.60539 0.99726 1.31519 1.36932 1.22573 0.93423 0.95437 0.93323 0.88984 1.23168 0.98408 0.96592 1.02296 1.22503 1.01522 0.90719 1.04541 1.21071 0.96631 0.97868 0.96298 1.22198 0.98474 0.96953 1.01654 1.22473 0.90685 0.95180 0.92930 1.87929 1.53812 1.50080 1.38085 1.22095 0.91433 0.86202 0.97670 0.92740 0.94660 0.95439 0.89243 0.94468 0.92851 0.84545 0.88573 0.89605 0.90099 0.92252 0.90490 0.91186 0.93781 0.89372 0.89165 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.85 37.16 0.33 -2.82 16 2 C -0.11 -2.59 5.45 -26.73 -0.15 -2.74 16 3 C 0.22 5.53 2.21 -68.86 -0.15 5.38 16 4 H 0.00 0.10 7.57 -51.93 -0.39 -0.29 16 5 C -0.52 -14.22 8.59 -34.44 -0.30 -14.52 16 6 H 0.06 1.55 7.62 -52.49 -0.40 1.15 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.32 11.29 55.43 0.63 -24.70 16 9 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.66 -13.83 6.08 -101.04 -0.61 -14.45 16 14 C 0.06 1.16 3.73 -67.81 -0.25 0.91 16 15 H 0.09 1.81 7.10 -51.93 -0.37 1.44 16 16 C -0.17 -2.50 8.83 -26.84 -0.24 -2.74 16 17 C -0.19 -2.86 2.14 -154.54 -0.33 -3.19 16 18 C -0.08 -1.12 5.16 -26.38 -0.14 -1.26 16 19 C -0.16 -2.05 6.15 -26.49 -0.16 -2.22 16 20 C 0.06 0.81 6.73 37.19 0.25 1.06 16 21 O -0.38 -5.87 10.76 -35.23 -0.38 -6.24 16 22 C 0.10 1.42 6.63 37.25 0.25 1.67 16 23 H 0.05 1.05 4.98 -51.93 -0.26 0.79 16 24 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.33 6.99 6.29 -39.29 -0.25 6.74 16 30 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.23 6.70 -51.93 -0.35 0.88 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.20 8.08 -51.93 -0.42 0.79 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -28.34 300.67 -8.36 -36.69 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.52 Total: 6.70 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -0.98 Total: -18.81 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.01 Total: -39.14 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.38 Total: -6.24 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.34 -8.36 -36.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.615 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds